Wall clock time and date at job start Mon Mar 30 2020 06:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00065 * 2 1 4 4 H 1.48497 * 109.47408 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47588 * 300.00578 * 3 2 1 6 6 H 1.48506 * 109.47196 * 60.00180 * 3 2 1 7 7 C 1.37872 * 120.00143 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00409 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99946 * 359.97438 * 7 2 1 10 10 C 1.50702 * 109.47377 * 180.02562 * 9 7 2 11 11 C 1.38458 * 119.99092 * 270.23200 * 10 9 7 12 12 F 1.35102 * 119.99133 * 0.02562 * 11 10 9 13 13 C 1.38414 * 120.02150 * 180.23007 * 11 10 9 14 14 C 1.38445 * 120.00616 * 359.78943 * 13 11 10 15 15 F 1.35100 * 120.00269 * 180.02562 * 14 13 11 16 16 C 1.38495 * 119.99078 * 359.97438 * 14 13 11 17 17 Cl 1.73610 * 120.01047 * 180.02562 * 16 14 13 18 18 C 1.38399 * 119.99992 * 89.99826 * 10 9 7 19 19 F 1.35104 * 120.00201 * 0.02562 * 18 10 9 20 20 H 0.97002 * 120.00003 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.47105 * 60.00333 * 9 7 2 22 22 H 1.09009 * 109.47164 * 300.00036 * 9 7 2 23 23 H 1.07992 * 119.99916 * 179.76938 * 13 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 6 2.6837 -4.1675 -1.1997 12 9 2.2486 -3.6504 -2.3695 13 6 3.5795 -5.2227 -1.2005 14 6 4.0258 -5.7529 -0.0020 15 9 4.9005 -6.7825 -0.0028 16 6 3.5763 -5.2269 1.1978 17 17 4.1362 -5.8909 2.7010 18 6 2.6800 -4.1706 1.1980 19 9 2.2407 -3.6574 2.3681 20 1 -0.4850 0.8401 0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6247 -2.5571 0.8897 23 1 3.9301 -5.6327 -2.1360 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259977097.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:51 Heat of formation + Delta-G solvation = -139.982334 kcal Electronic energy + Delta-G solvation = -15777.028243 eV Core-core repulsion = 12393.882623 eV Total energy + Delta-G solvation = -3383.145620 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.007 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -50.22789 -50.13635 -50.07689 -39.93964 -37.80824 -35.54702 -33.11146 -31.49421 -29.00519 -25.59372 -24.34631 -22.88334 -19.73032 -19.21111 -18.69730 -17.60008 -17.42529 -17.09926 -16.96178 -16.49268 -16.42298 -16.39220 -15.62419 -15.11483 -14.46102 -13.86306 -13.77134 -13.69776 -13.55811 -13.11582 -12.71452 -12.57969 -12.27618 -12.26447 -11.77339 -11.57597 -10.65824 -9.95708 -9.72097 -8.26052 -6.39543 -0.50936 -0.34633 0.67162 1.39568 1.40328 1.52962 1.91249 2.33490 2.38860 2.98684 3.06609 3.07420 3.38173 3.66417 4.24643 4.32215 4.47642 4.62708 4.75906 5.19289 5.35522 5.43642 5.64665 6.01713 6.70100 7.29464 8.84368 Molecular weight = 250.01amu Principal moments of inertia in cm(-1) A = 0.027575 B = 0.007561 C = 0.006600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.179539 B = 3702.511938 C = 4241.719901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.010 3.990 3 Si 0.965 3.035 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.277 1.277 7 C -0.534 4.534 8 H 0.058 0.942 9 C 0.060 3.940 10 C -0.131 4.131 11 C 0.154 3.846 12 F -0.120 7.120 13 C -0.162 4.162 14 C 0.157 3.843 15 F -0.107 7.107 16 C -0.124 4.124 17 Cl -0.023 7.023 18 C 0.151 3.849 19 F -0.119 7.119 20 H 0.268 0.732 21 H 0.022 0.978 22 H 0.017 0.983 23 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.279 -11.611 -0.386 14.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.189 4.189 3 Si 0.789 3.211 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.202 1.202 7 C -0.572 4.572 8 H 0.076 0.924 9 C 0.023 3.977 10 C -0.133 4.133 11 C 0.134 3.866 12 F -0.099 7.099 13 C -0.182 4.182 14 C 0.136 3.864 15 F -0.085 7.085 16 C -0.153 4.153 17 Cl 0.006 6.994 18 C 0.131 3.869 19 F -0.097 7.097 20 H 0.077 0.923 21 H 0.041 0.959 22 H 0.035 0.965 23 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 8.180 -11.568 -0.243 14.170 hybrid contribution -0.046 0.989 0.328 1.043 sum 8.134 -10.579 0.085 13.345 Atomic orbital electron populations 1.70061 1.07605 1.28153 1.50553 1.25865 0.95778 1.03046 0.94208 0.85393 0.79014 0.78663 0.78020 1.18769 1.19968 1.20222 1.21290 0.93126 0.90759 1.52012 0.92399 1.17988 0.92433 0.89676 0.97627 1.20544 1.01987 0.99629 0.91133 1.16876 0.95579 0.93569 0.80533 1.91544 1.87832 1.85801 1.44681 1.21147 0.99801 0.97480 0.99735 1.16289 0.91574 0.87739 0.90766 1.91587 1.65355 1.54514 1.97060 1.20877 1.04323 1.00544 0.89569 1.98378 1.87860 1.84045 1.29126 1.16545 0.95724 0.93116 0.81548 1.91537 1.87586 1.85773 1.44830 0.92340 0.95943 0.96512 0.78440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.46 13.29 21.45 0.28 -54.17 14 2 C 0.01 0.57 5.46 84.65 0.46 1.03 14 3 Si 0.96 43.44 29.54 68.60 2.03 45.46 14 4 H -0.26 -11.43 7.11 99.48 0.71 -10.73 14 5 H -0.27 -11.95 7.11 99.48 0.71 -11.24 14 6 H -0.28 -12.16 7.11 99.48 0.71 -11.45 14 7 C -0.53 -29.61 9.09 25.60 0.23 -29.38 14 8 H 0.06 3.14 7.74 -2.91 -0.02 3.12 14 9 C 0.06 3.07 4.74 29.10 0.14 3.21 14 10 C -0.13 -5.37 5.08 -19.77 -0.10 -5.47 14 11 C 0.15 5.32 7.24 22.36 0.16 5.48 14 12 F -0.12 -4.45 16.48 44.97 0.74 -3.71 14 13 C -0.16 -4.15 10.00 22.36 0.22 -3.92 14 14 C 0.16 4.16 7.27 22.38 0.16 4.32 14 15 F -0.11 -2.54 16.83 44.97 0.76 -1.78 14 16 C -0.12 -3.84 6.33 22.40 0.14 -3.70 14 17 Cl -0.02 -0.64 28.28 -2.72 -0.08 -0.72 14 18 C 0.15 5.70 7.21 22.38 0.16 5.86 14 19 F -0.12 -4.90 16.04 44.97 0.72 -4.18 14 20 H 0.27 14.74 8.31 -92.71 -0.77 13.97 14 21 H 0.02 1.22 7.65 -2.39 -0.02 1.20 14 22 H 0.02 0.92 7.64 -2.38 -0.02 0.90 14 23 H 0.20 3.44 8.06 -2.91 -0.02 3.42 14 Total: -1.00 -59.78 243.60 7.31 -52.47 By element: Atomic # 1 Polarization: -12.08 SS G_CDS: 1.27 Total: -10.81 kcal Atomic # 6 Polarization: -24.15 SS G_CDS: 1.58 Total: -22.57 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: 0.28 Total: -54.17 kcal Atomic # 9 Polarization: -11.88 SS G_CDS: 2.22 Total: -9.66 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -0.08 Total: -0.72 kcal Total: -59.78 7.31 -52.47 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259977097.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.508 kcal (2) G-P(sol) polarization free energy of solvation -59.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds