Wall clock time and date at job start Mon Mar 30 2020 06:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47466 * 179.97438 * 10 9 7 12 12 C 1.37899 * 119.87691 * 264.72703 * 11 10 9 13 13 C 1.38374 * 119.69475 * 179.75429 * 12 11 10 14 14 C 1.37652 * 120.37658 * 0.51435 * 13 12 11 15 15 C 1.40029 * 120.65062 * 359.75956 * 14 13 12 16 16 O 1.34490 * 127.96704 * 179.97438 * 15 14 13 17 17 C 1.32215 * 117.13512 * 179.97438 * 16 15 14 18 18 O 1.21621 * 125.08122 * 179.97438 * 17 16 15 19 19 S 1.75790 * 109.84038 * 359.97438 * 17 16 15 20 20 C 1.38728 * 118.57712 * 359.97189 * 15 14 13 21 21 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 23 23 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 24 24 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 25 25 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 26 26 H 1.07993 * 120.15345 * 0.02562 * 12 11 10 27 27 H 1.07996 * 119.80953 * 180.25604 * 13 12 11 28 28 H 1.08004 * 119.67741 * 179.72935 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 6 1.2437 -5.6167 1.1921 13 6 0.5471 -6.8123 1.1888 14 6 0.1106 -7.3603 0.0039 15 6 0.3590 -6.7166 -1.2146 16 8 0.0039 -7.1160 -2.4488 17 6 0.3514 -6.3361 -3.4583 18 8 0.1062 -6.5570 -4.6289 19 16 1.2209 -4.9321 -2.8557 20 6 1.0533 -5.5156 -1.2013 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 0.8903 23 1 0.6246 -2.5571 -0.8897 24 1 2.8718 -3.6044 -0.8895 25 1 2.8718 -3.6044 0.8904 26 1 1.5879 -5.1920 2.1235 27 1 0.3483 -7.3204 2.1208 28 1 -0.4283 -8.2962 0.0140 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260016226.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:23 Heat of formation + Delta-G solvation = -42.200411 kcal Electronic energy + Delta-G solvation = -15279.961442 eV Core-core repulsion = 12580.789505 eV Total energy + Delta-G solvation = -2699.171936 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.99601 -39.05047 -37.60740 -34.24507 -32.28485 -30.60552 -29.25765 -26.08572 -24.96695 -22.97011 -22.16711 -20.98061 -18.97078 -17.52330 -17.25324 -16.81305 -16.42650 -15.74423 -14.83202 -14.55780 -14.09888 -13.70019 -13.53802 -12.90229 -12.68563 -12.43034 -12.07655 -11.72350 -11.33689 -10.98191 -10.94425 -10.63800 -10.32165 -10.25099 -9.96222 -9.73842 -9.24098 -8.48266 -8.42821 -7.98662 -6.07439 -4.11509 0.82506 0.88272 1.04718 1.56707 1.77158 2.27305 3.29304 3.34448 3.36078 3.50303 4.36889 4.43477 4.87447 5.11018 5.16459 5.23985 5.28674 5.68280 5.78675 5.98250 6.25087 6.35920 6.45695 6.56924 6.68414 6.79510 6.95872 7.53898 7.63228 7.89303 8.28165 8.94065 9.53242 11.03472 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.026096 B = 0.006348 C = 0.005434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.711939 B = 4409.573507 C = 5151.589470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.526 4.526 8 H 0.057 0.943 9 C 0.030 3.970 10 C -0.089 4.089 11 C 0.017 3.983 12 C -0.121 4.121 13 C -0.074 4.074 14 C -0.115 4.115 15 C 0.089 3.911 16 O -0.256 6.256 17 C 0.457 3.543 18 O -0.420 6.420 19 S 0.054 5.946 20 C -0.188 4.188 21 H 0.263 0.737 22 H 0.020 0.980 23 H 0.021 0.979 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.142 0.858 27 H 0.141 0.859 28 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.809 -13.594 1.760 13.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.721 3.279 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.564 4.564 8 H 0.075 0.925 9 C -0.007 4.007 10 C -0.126 4.126 11 C 0.013 3.987 12 C -0.142 4.142 13 C -0.093 4.093 14 C -0.134 4.134 15 C 0.039 3.961 16 O -0.169 6.169 17 C 0.191 3.809 18 O -0.309 6.309 19 S 0.294 5.706 20 C -0.302 4.302 21 H 0.072 0.928 22 H 0.039 0.961 23 H 0.040 0.960 24 H 0.084 0.916 25 H 0.091 0.909 26 H 0.159 0.841 27 H 0.159 0.841 28 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.966 -12.689 0.442 12.848 hybrid contribution -0.191 0.017 0.494 0.529 sum 1.775 -12.672 0.936 12.830 Atomic orbital electron populations 1.69949 1.06082 1.26933 1.50096 1.25000 0.94837 0.99275 0.95054 0.86640 0.79593 0.82996 0.78686 1.20138 1.21237 1.20181 1.21122 0.93000 0.90669 1.51596 0.92523 1.19086 0.93507 0.90143 0.97934 1.21072 0.98726 0.90465 1.02371 1.19822 0.93854 0.95819 0.89236 1.21137 1.00035 0.95219 0.97767 1.20956 0.95981 0.95441 0.96931 1.20201 1.04396 1.01460 0.87393 1.18999 0.99523 0.94291 0.83285 1.83119 1.68853 1.50455 1.14425 1.24780 0.82384 0.86572 0.87117 1.91004 1.55423 1.72349 1.12125 1.86774 1.62512 1.24065 0.97256 1.22484 1.09929 0.98967 0.98793 0.92781 0.96128 0.96042 0.91597 0.90856 0.84062 0.84076 0.84414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.14 13.29 55.43 0.74 -25.40 15 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 15 3 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 15 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 15 6 H -0.28 -6.37 7.11 56.52 0.40 -5.96 15 7 C -0.53 -14.20 9.11 -34.44 -0.31 -14.51 15 8 H 0.06 1.47 7.74 -52.49 -0.41 1.07 15 9 C 0.03 0.74 4.95 -27.88 -0.14 0.60 15 10 C -0.09 -1.68 5.10 -27.89 -0.14 -1.82 15 11 C 0.02 0.27 5.15 -104.38 -0.54 -0.26 15 12 C -0.12 -1.60 9.68 -39.66 -0.38 -1.98 15 13 C -0.07 -0.79 10.01 -39.75 -0.40 -1.19 15 14 C -0.11 -1.35 10.06 -39.12 -0.39 -1.74 15 15 C 0.09 1.32 7.06 -38.73 -0.27 1.05 15 16 O -0.26 -4.05 10.05 -14.12 -0.14 -4.19 15 17 C 0.46 7.67 8.92 101.05 0.90 8.57 15 18 O -0.42 -7.75 18.05 -19.16 -0.35 -8.09 15 19 S 0.05 0.90 22.81 -107.50 -2.45 -1.55 15 20 C -0.19 -3.10 6.27 -39.03 -0.24 -3.34 15 21 H 0.26 7.30 8.31 -40.82 -0.34 6.96 15 22 H 0.02 0.53 8.14 -51.93 -0.42 0.10 15 23 H 0.02 0.56 8.14 -51.93 -0.42 0.14 15 24 H 0.07 1.25 7.79 -51.93 -0.40 0.85 15 25 H 0.07 1.28 8.04 -51.93 -0.42 0.87 15 26 H 0.14 1.61 8.06 -52.49 -0.42 1.19 15 27 H 0.14 1.00 8.06 -52.49 -0.42 0.58 15 28 H 0.14 1.23 8.06 -52.48 -0.42 0.80 15 LS Contribution 269.16 15.07 4.06 4.06 Total: -1.00 -30.28 269.16 -7.67 -37.95 By element: Atomic # 1 Polarization: -3.29 SS G_CDS: -2.48 Total: -5.77 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -2.02 Total: -13.05 kcal Atomic # 7 Polarization: -26.14 SS G_CDS: 0.74 Total: -25.40 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: -0.49 Total: -12.28 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -2.45 Total: -1.55 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.28 -7.67 -37.95 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260016226.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.255 kcal (2) G-P(sol) polarization free energy of solvation -30.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds