Wall clock time and date at job start Mon Mar 30 2020 06:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00161 * 2 1 4 4 H 1.48499 * 109.47089 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46931 * 300.00142 * 3 2 1 6 6 H 1.48500 * 109.47092 * 59.99863 * 3 2 1 7 7 C 1.37887 * 119.99702 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99358 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00010 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46678 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.46678 * 180.02562 * 10 9 7 12 12 C 1.38415 * 120.15363 * 269.97504 * 11 10 9 13 13 C 1.37610 * 120.38078 * 180.02562 * 12 11 10 14 14 C 1.40073 * 120.64659 * 359.97438 * 13 12 11 15 15 O 1.34500 * 127.95495 * 180.02562 * 14 13 12 16 16 C 1.32216 * 117.12371 * 179.97438 * 15 14 13 17 17 O 1.21626 * 125.07841 * 180.02562 * 16 15 14 18 18 S 1.75778 * 109.84153 * 359.97438 * 16 15 14 19 19 C 1.38678 * 118.57906 * 0.02562 * 14 13 12 20 20 C 1.37849 * 120.15434 * 89.99943 * 11 10 9 21 21 H 0.96997 * 120.00112 * 359.97438 * 1 2 3 22 22 H 1.08994 * 109.47201 * 60.00028 * 9 7 2 23 23 H 1.09001 * 109.47234 * 299.99576 * 9 7 2 24 24 H 1.09002 * 109.47177 * 59.99882 * 10 9 7 25 25 H 1.09001 * 109.46772 * 299.99650 * 10 9 7 26 26 H 1.08003 * 119.80679 * 0.04206 * 12 11 10 27 27 H 1.07998 * 119.67398 * 180.02562 * 13 12 11 28 28 H 1.08006 * 119.87524 * 359.95524 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4917 -4.9672 -0.0012 12 6 1.1441 -5.5699 1.1954 13 6 0.4565 -6.7619 1.2003 14 6 0.0970 -7.3837 -0.0023 15 8 -0.5704 -8.5395 -0.1687 16 6 -0.7975 -8.9311 -1.4109 17 8 -1.3853 -9.9479 -1.7270 18 16 -0.1242 -7.7617 -2.5375 19 6 0.4494 -6.7727 -1.1963 20 6 1.1459 -5.5665 -1.1934 21 1 -0.4850 0.8400 0.0004 22 1 0.6240 -2.5567 -0.8902 23 1 0.6247 -2.5572 0.8897 24 1 2.8720 -3.6044 0.8895 25 1 2.8719 -3.6044 -0.8906 26 1 1.4139 -5.1018 2.1306 27 1 0.1906 -7.2219 2.1405 28 1 1.4153 -5.0986 -2.1288 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260019162.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:20 Heat of formation + Delta-G solvation = -57.949072 kcal Electronic energy + Delta-G solvation = -14936.506679 eV Core-core repulsion = 12236.651830 eV Total energy + Delta-G solvation = -2699.854850 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.23942 -40.28942 -38.99077 -35.78148 -33.77786 -32.32716 -30.53485 -27.34498 -26.75348 -24.34774 -23.41263 -22.11812 -20.93993 -18.75335 -18.54880 -18.49406 -17.64979 -16.84002 -16.48554 -16.15712 -15.19891 -15.02045 -14.90114 -14.41129 -14.35434 -13.84714 -13.65127 -13.33621 -12.85499 -12.69231 -12.33905 -12.21188 -11.72053 -11.68802 -11.63202 -11.23759 -11.12752 -10.52558 -9.65848 -9.28587 -8.16882 -6.27275 -0.53252 -0.31710 -0.09051 0.19494 0.49548 1.04745 1.42957 1.44820 1.56470 2.37211 2.45743 3.17582 3.23517 3.78972 4.00326 4.13300 4.19150 4.53419 4.69270 4.82752 4.89236 4.98859 5.16766 5.33924 5.41864 5.42286 5.56467 5.78235 5.81969 5.89136 6.26247 6.91070 7.42426 8.94483 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.047577 B = 0.004332 C = 0.004191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.382797 B = 6462.678236 C = 6678.643501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.960 3.040 4 H -0.259 1.259 5 H -0.283 1.283 6 H -0.281 1.281 7 C -0.538 4.538 8 H 0.066 0.934 9 C 0.032 3.968 10 C -0.066 4.066 11 C -0.064 4.064 12 C -0.070 4.070 13 C -0.080 4.080 14 C 0.060 3.940 15 O -0.253 6.253 16 C 0.466 3.534 17 O -0.441 6.441 18 S 0.047 5.953 19 C -0.192 4.192 20 C -0.056 4.056 21 H 0.262 0.738 22 H -0.010 1.010 23 H -0.002 1.002 24 H 0.082 0.918 25 H 0.071 0.929 26 H 0.168 0.832 27 H 0.173 0.827 28 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.154 -13.272 0.396 13.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.785 3.215 4 H -0.183 1.183 5 H -0.210 1.210 6 H -0.207 1.207 7 C -0.576 4.576 8 H 0.084 0.916 9 C -0.005 4.005 10 C -0.103 4.103 11 C -0.066 4.066 12 C -0.090 4.090 13 C -0.100 4.100 14 C 0.011 3.989 15 O -0.165 6.165 16 C 0.201 3.799 17 O -0.332 6.332 18 S 0.286 5.714 19 C -0.306 4.306 20 C -0.078 4.078 21 H 0.071 0.929 22 H 0.009 0.991 23 H 0.016 0.984 24 H 0.100 0.900 25 H 0.089 0.911 26 H 0.185 0.815 27 H 0.191 0.809 28 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.667 -13.776 -0.974 14.065 hybrid contribution -0.134 0.913 0.947 1.323 sum 2.533 -12.862 -0.027 13.109 Atomic orbital electron populations 1.70099 1.07769 1.27572 1.51932 1.25928 0.95647 1.03209 0.95000 0.85472 0.79344 0.79196 0.77478 1.18280 1.20950 1.20695 1.21751 0.93787 0.92076 1.49984 0.91595 1.18975 0.94111 0.92143 0.95293 1.20622 0.97262 0.89256 1.03154 1.20274 0.97391 0.96159 0.92771 1.21288 0.95293 0.92999 0.99378 1.20661 0.99148 0.95134 0.95015 1.19238 0.98809 0.84652 0.96197 1.83122 1.64337 1.37267 1.31753 1.24555 0.82268 0.89818 0.83220 1.91008 1.41964 1.25412 1.74779 1.86206 1.61118 1.17538 1.06544 1.22587 1.10586 1.03205 0.94223 1.20462 0.96113 0.91276 0.99907 0.92940 0.99120 0.98361 0.89983 0.91065 0.81495 0.80918 0.83866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.55 13.29 21.45 0.28 -54.27 15 2 C 0.00 -0.01 5.46 84.66 0.46 0.46 15 3 Si 0.96 42.15 29.54 68.60 2.03 44.17 15 4 H -0.26 -10.71 7.11 99.48 0.71 -10.00 15 5 H -0.28 -12.35 7.11 99.48 0.71 -11.64 15 6 H -0.28 -12.14 7.11 99.48 0.71 -11.44 15 7 C -0.54 -28.17 9.11 25.60 0.23 -27.94 15 8 H 0.07 3.27 7.74 -2.91 -0.02 3.24 15 9 C 0.03 1.50 4.96 29.85 0.15 1.65 15 10 C -0.07 -2.24 5.29 29.85 0.16 -2.08 15 11 C -0.06 -1.84 5.13 -19.92 -0.10 -1.94 15 12 C -0.07 -1.67 9.67 22.16 0.21 -1.46 15 13 C -0.08 -1.74 10.06 22.57 0.23 -1.51 15 14 C 0.06 1.54 7.06 22.82 0.16 1.70 15 15 O -0.25 -6.86 10.05 37.20 0.37 -6.49 15 16 C 0.47 13.00 8.92 113.37 1.01 14.01 15 17 O -0.44 -14.07 18.05 19.23 0.35 -13.73 15 18 S 0.05 1.15 23.38 -56.49 -1.32 -0.17 15 19 C -0.19 -5.13 6.45 22.63 0.15 -4.99 15 20 C -0.06 -1.55 9.72 22.43 0.22 -1.33 15 21 H 0.26 14.46 8.31 -92.71 -0.77 13.69 15 22 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 15 23 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 15 24 H 0.08 2.56 8.09 -2.39 -0.02 2.54 15 25 H 0.07 2.33 8.09 -2.39 -0.02 2.31 15 26 H 0.17 3.24 8.06 -2.91 -0.02 3.22 15 27 H 0.17 2.60 8.06 -2.91 -0.02 2.58 15 28 H 0.14 3.78 8.06 -2.91 -0.02 3.75 15 Total: -1.00 -62.04 270.13 5.77 -56.28 By element: Atomic # 1 Polarization: -3.56 SS G_CDS: 1.18 Total: -2.38 kcal Atomic # 6 Polarization: -26.29 SS G_CDS: 2.88 Total: -23.42 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: 0.28 Total: -54.27 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: 0.72 Total: -20.22 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.17 kcal Atomic # 16 Polarization: 1.15 SS G_CDS: -1.32 Total: -0.17 kcal Total: -62.04 5.77 -56.28 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260019162.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.672 kcal (2) G-P(sol) polarization free energy of solvation -62.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds