Wall clock time and date at job start Mon Mar 30 2020 06:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86796 * 120.00400 * 2 1 4 4 H 1.48497 * 109.47393 * 239.99869 * 3 2 1 5 5 H 1.48504 * 109.46833 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47611 * 119.99367 * 3 2 1 7 7 C 1.37877 * 120.00014 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00249 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99927 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47059 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46681 * 179.97438 * 10 9 7 12 12 C 1.37655 * 119.67423 * 264.76964 * 11 10 9 13 13 C 1.38371 * 120.37716 * 179.74620 * 12 11 10 14 14 C 1.37902 * 119.69758 * 0.24293 * 13 12 11 15 15 C 1.39242 * 120.24208 * 0.02562 * 14 13 12 16 16 S 1.76236 * 130.56774 * 180.02562 * 15 14 13 17 17 C 1.75777 * 90.59064 * 179.97438 * 16 15 14 18 18 O 1.21630 * 125.07614 * 180.02562 * 17 16 15 19 19 O 1.32214 * 109.84719 * 0.02562 * 17 16 15 20 20 C 1.34495 * 117.13122 * 359.97438 * 19 17 16 21 21 H 0.97005 * 119.99847 * 0.02562 * 1 2 3 22 22 H 1.08993 * 109.47022 * 59.99673 * 9 7 2 23 23 H 1.09006 * 109.46947 * 299.99687 * 9 7 2 24 24 H 1.08993 * 109.47425 * 59.99975 * 10 9 7 25 25 H 1.09000 * 109.46608 * 299.99563 * 10 9 7 26 26 H 1.08001 * 119.81218 * 359.96692 * 12 11 10 27 27 H 1.07997 * 120.15415 * 180.26534 * 13 12 11 28 28 H 1.08000 * 119.87949 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 6 1.2456 -5.6115 1.1925 13 6 0.5505 -6.8078 1.2105 14 6 0.1071 -7.3582 0.0263 15 6 0.3571 -6.7149 -1.1830 16 16 -0.0761 -7.1641 -2.8312 17 6 0.7040 -5.7157 -3.4503 18 8 0.7646 -5.4017 -4.6239 19 8 1.2151 -5.0186 -2.4499 20 6 1.0540 -5.5156 -1.2106 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5570 -0.8896 23 1 0.6240 -2.5567 0.8904 24 1 2.8719 -3.6044 0.8904 25 1 2.8718 -3.6043 -0.8895 26 1 1.5941 -5.1791 2.1187 27 1 0.3559 -7.3081 2.1476 28 1 -0.4361 -8.2916 0.0370 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260060661.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:39 Heat of formation + Delta-G solvation = -41.065962 kcal Electronic energy + Delta-G solvation = -15370.414612 eV Core-core repulsion = 12671.291869 eV Total energy + Delta-G solvation = -2699.122743 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.99523 -39.01905 -37.52066 -34.33759 -32.30230 -30.61569 -29.11882 -25.81917 -25.29363 -22.94839 -22.08840 -20.87178 -19.27782 -17.33282 -17.18466 -16.89002 -16.31990 -15.89044 -14.88047 -14.52250 -14.00784 -13.70026 -13.46725 -12.81302 -12.73045 -12.44027 -12.20349 -11.75973 -11.40352 -11.08020 -10.92403 -10.62991 -10.37294 -10.22593 -9.96944 -9.65137 -9.20042 -8.41364 -8.38525 -8.16710 -6.03693 -4.07263 0.68188 0.84390 1.03266 1.32073 1.76758 2.37331 3.32084 3.36775 3.38805 3.49196 4.33368 4.43963 4.85418 5.11196 5.16847 5.21511 5.32415 5.69622 5.74993 6.01072 6.25295 6.43185 6.48994 6.56887 6.69120 6.84738 7.04267 7.58407 7.69612 7.93615 8.33257 8.98442 9.57159 11.07453 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.025892 B = 0.006231 C = 0.005340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.138202 B = 4492.624503 C = 5242.431921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.524 4.524 8 H 0.057 0.943 9 C 0.031 3.969 10 C -0.084 4.084 11 C -0.027 4.027 12 C -0.083 4.083 13 C -0.110 4.110 14 C -0.068 4.068 15 C -0.180 4.180 16 S -0.008 6.008 17 C 0.475 3.525 18 O -0.410 6.410 19 O -0.234 6.234 20 C 0.090 3.910 21 H 0.262 0.738 22 H 0.018 0.982 23 H 0.020 0.980 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.145 0.855 27 H 0.139 0.861 28 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.426 -16.150 1.813 16.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.075 0.925 9 C -0.006 4.006 10 C -0.121 4.121 11 C -0.029 4.029 12 C -0.103 4.103 13 C -0.130 4.130 14 C -0.091 4.091 15 C -0.294 4.294 16 S 0.230 5.770 17 C 0.208 3.792 18 O -0.297 6.297 19 O -0.144 6.144 20 C 0.041 3.959 21 H 0.072 0.928 22 H 0.036 0.964 23 H 0.038 0.962 24 H 0.090 0.910 25 H 0.086 0.914 26 H 0.163 0.837 27 H 0.157 0.843 28 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.252 -16.684 0.504 16.693 hybrid contribution 0.862 1.854 0.416 2.086 sum 0.609 -14.830 0.920 14.871 Atomic orbital electron populations 1.69952 1.06099 1.26868 1.50331 1.25008 0.94849 0.99299 0.95117 0.86630 0.79579 0.82978 0.78670 1.20165 1.21252 1.20165 1.21147 0.93039 0.90736 1.51304 0.92499 1.19083 0.93556 0.90362 0.97633 1.20953 0.98656 0.90105 1.02391 1.19834 0.97956 0.97573 0.87565 1.21009 0.97725 0.94463 0.97086 1.21121 0.98194 0.96082 0.97616 1.20293 0.99988 0.99693 0.89079 1.22487 1.08796 0.99825 0.98301 1.86088 1.64901 1.27660 0.98348 1.24276 0.80798 0.86594 0.87483 1.91020 1.57173 1.69532 1.11989 1.83272 1.67219 1.49688 1.14255 1.18890 1.01175 0.92646 0.83216 0.92836 0.96412 0.96199 0.91016 0.91403 0.83691 0.84327 0.84777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.82 13.29 55.43 0.74 -26.08 15 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 15 3 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 15 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 15 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 15 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 7 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 15 8 H 0.06 1.52 7.74 -52.48 -0.41 1.12 15 9 C 0.03 0.78 4.96 -27.88 -0.14 0.64 15 10 C -0.08 -1.65 5.19 -27.88 -0.14 -1.79 15 11 C -0.03 -0.46 5.17 -104.16 -0.54 -1.00 15 12 C -0.08 -1.10 9.62 -39.75 -0.38 -1.48 15 13 C -0.11 -1.17 10.06 -39.66 -0.40 -1.57 15 14 C -0.07 -0.77 10.06 -39.33 -0.40 -1.17 15 15 C -0.18 -2.57 6.45 -39.03 -0.25 -2.82 15 16 S -0.01 -0.11 23.38 -107.50 -2.51 -2.62 15 17 C 0.48 8.28 8.92 101.05 0.90 9.19 15 18 O -0.41 -7.93 18.05 -19.17 -0.35 -8.28 15 19 O -0.23 -4.43 9.85 -14.13 -0.14 -4.57 15 20 C 0.09 1.54 6.82 -38.73 -0.26 1.28 15 21 H 0.26 7.44 8.31 -40.82 -0.34 7.10 15 22 H 0.02 0.49 8.14 -51.93 -0.42 0.07 15 23 H 0.02 0.52 8.14 -51.93 -0.42 0.10 15 24 H 0.07 1.28 8.03 -51.93 -0.42 0.86 15 25 H 0.07 1.37 8.04 -51.93 -0.42 0.96 15 26 H 0.15 1.63 8.05 -52.49 -0.42 1.20 15 27 H 0.14 0.99 8.06 -52.49 -0.42 0.57 15 28 H 0.13 1.12 8.06 -52.49 -0.42 0.70 15 LS Contribution 269.79 15.07 4.07 4.07 Total: -1.00 -31.34 269.79 -7.73 -39.07 By element: Atomic # 1 Polarization: -3.58 SS G_CDS: -2.49 Total: -6.07 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: -2.02 Total: -12.07 kcal Atomic # 7 Polarization: -26.82 SS G_CDS: 0.74 Total: -26.08 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: -0.49 Total: -12.85 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -0.11 SS G_CDS: -2.51 Total: -2.62 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -31.34 -7.73 -39.07 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260060661.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.001 kcal (2) G-P(sol) polarization free energy of solvation -31.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds