Wall clock time and date at job start Mon Mar 30 2020 06:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86796 * 120.00400 * 2 1 4 4 H 1.48497 * 109.47393 * 239.99869 * 3 2 1 5 5 H 1.48504 * 109.46833 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47611 * 119.99367 * 3 2 1 7 7 C 1.37877 * 120.00014 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00249 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99927 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47059 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46681 * 179.97438 * 10 9 7 12 12 C 1.37655 * 119.67423 * 264.76964 * 11 10 9 13 13 C 1.38371 * 120.37716 * 179.74620 * 12 11 10 14 14 C 1.37902 * 119.69758 * 0.24293 * 13 12 11 15 15 C 1.39242 * 120.24208 * 0.02562 * 14 13 12 16 16 S 1.76236 * 130.56774 * 180.02562 * 15 14 13 17 17 C 1.75777 * 90.59064 * 179.97438 * 16 15 14 18 18 O 1.21630 * 125.07614 * 180.02562 * 17 16 15 19 19 O 1.32214 * 109.84719 * 0.02562 * 17 16 15 20 20 C 1.34495 * 117.13122 * 359.97438 * 19 17 16 21 21 H 0.97005 * 119.99847 * 0.02562 * 1 2 3 22 22 H 1.08993 * 109.47022 * 59.99673 * 9 7 2 23 23 H 1.09006 * 109.46947 * 299.99687 * 9 7 2 24 24 H 1.08993 * 109.47425 * 59.99975 * 10 9 7 25 25 H 1.09000 * 109.46608 * 299.99563 * 10 9 7 26 26 H 1.08001 * 119.81218 * 359.96692 * 12 11 10 27 27 H 1.07997 * 120.15415 * 180.26534 * 13 12 11 28 28 H 1.08000 * 119.87949 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 6 1.2456 -5.6115 1.1925 13 6 0.5505 -6.8078 1.2105 14 6 0.1071 -7.3582 0.0263 15 6 0.3571 -6.7149 -1.1830 16 16 -0.0761 -7.1641 -2.8312 17 6 0.7040 -5.7157 -3.4503 18 8 0.7646 -5.4017 -4.6239 19 8 1.2151 -5.0186 -2.4499 20 6 1.0540 -5.5156 -1.2106 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5570 -0.8896 23 1 0.6240 -2.5567 0.8904 24 1 2.8719 -3.6044 0.8904 25 1 2.8718 -3.6043 -0.8895 26 1 1.5941 -5.1791 2.1187 27 1 0.3559 -7.3081 2.1476 28 1 -0.4361 -8.2916 0.0370 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260060661.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:38 Heat of formation + Delta-G solvation = -58.966772 kcal Electronic energy + Delta-G solvation = -15371.190849 eV Core-core repulsion = 12671.291869 eV Total energy + Delta-G solvation = -2699.898980 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.26214 -40.23221 -38.78908 -36.07962 -34.11875 -31.71260 -30.73306 -27.10328 -27.02804 -24.36346 -23.38753 -22.46914 -20.49933 -18.77351 -18.51363 -18.41098 -17.92451 -17.01039 -16.55035 -16.06388 -15.16730 -15.06609 -14.80375 -14.51900 -14.27512 -13.81943 -13.49992 -13.26954 -12.89344 -12.77729 -12.57275 -12.18691 -11.81369 -11.74888 -11.68583 -11.28308 -11.10249 -10.58137 -9.61749 -9.26289 -8.22442 -6.34347 -0.54464 -0.29077 -0.06438 0.19577 0.52788 1.15827 1.38608 1.42152 1.49707 2.38057 2.46383 3.11052 3.24357 3.86700 4.03071 4.16200 4.25093 4.36273 4.74114 4.75350 4.88331 5.08670 5.18034 5.32779 5.38102 5.45442 5.52925 5.67007 5.79239 5.87382 6.18590 6.81682 7.35209 8.89098 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.025892 B = 0.006231 C = 0.005340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.138202 B = 4492.624503 C = 5242.431921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.965 3.035 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.259 1.259 7 C -0.545 4.545 8 H 0.064 0.936 9 C 0.038 3.962 10 C -0.069 4.069 11 C -0.061 4.061 12 C -0.077 4.077 13 C -0.091 4.091 14 C -0.052 4.052 15 C -0.196 4.196 16 S 0.070 5.930 17 C 0.452 3.548 18 O -0.451 6.451 19 O -0.268 6.268 20 C 0.055 3.945 21 H 0.264 0.736 22 H -0.025 1.025 23 H 0.004 0.996 24 H 0.090 0.910 25 H 0.050 0.950 26 H 0.165 0.835 27 H 0.189 0.811 28 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.431 -18.202 3.961 18.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.789 3.211 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.583 4.583 8 H 0.082 0.918 9 C 0.001 3.999 10 C -0.107 4.107 11 C -0.063 4.063 12 C -0.096 4.096 13 C -0.110 4.110 14 C -0.074 4.074 15 C -0.310 4.310 16 S 0.309 5.691 17 C 0.188 3.812 18 O -0.342 6.342 19 O -0.180 6.180 20 C 0.007 3.993 21 H 0.072 0.928 22 H -0.006 1.006 23 H 0.022 0.978 24 H 0.109 0.891 25 H 0.068 0.932 26 H 0.183 0.817 27 H 0.206 0.794 28 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -0.238 -18.764 2.682 18.956 hybrid contribution 0.799 2.358 -0.157 2.495 sum 0.561 -16.406 2.525 16.609 Atomic orbital electron populations 1.70094 1.07875 1.27882 1.51462 1.25978 0.95742 1.03400 0.94588 0.85506 0.78300 0.78029 0.79270 1.19740 1.20868 1.18386 1.21656 0.93679 0.92135 1.50858 0.91823 1.18894 0.93945 0.92356 0.94690 1.20603 0.97517 0.90168 1.02389 1.19731 1.00165 0.97233 0.89180 1.21376 0.96953 0.95125 0.96171 1.21673 0.95505 0.94474 0.99364 1.20927 0.98306 1.00378 0.87773 1.22843 1.08917 0.99284 0.99925 1.85703 1.62880 1.23463 0.97021 1.24925 0.81160 0.88000 0.87069 1.90972 1.58805 1.71233 1.13185 1.83183 1.67912 1.51414 1.15509 1.19177 1.03241 0.94379 0.82494 0.92751 1.00627 0.97780 0.89141 0.93163 0.81715 0.79364 0.80595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.70 13.29 21.45 0.28 -57.42 15 2 C 0.00 0.05 5.46 84.66 0.46 0.51 15 3 Si 0.96 44.76 29.54 68.60 2.03 46.78 15 4 H -0.27 -12.37 7.11 99.48 0.71 -11.66 15 5 H -0.28 -12.87 7.11 99.48 0.71 -12.17 15 6 H -0.26 -11.27 7.11 99.48 0.71 -10.56 15 7 C -0.55 -31.32 9.11 25.60 0.23 -31.09 15 8 H 0.06 3.47 7.74 -2.91 -0.02 3.44 15 9 C 0.04 2.04 4.96 29.85 0.15 2.18 15 10 C -0.07 -2.83 5.19 29.85 0.15 -2.68 15 11 C -0.06 -2.06 5.17 -19.57 -0.10 -2.16 15 12 C -0.08 -1.81 9.62 22.16 0.21 -1.60 15 13 C -0.09 -1.46 10.06 22.22 0.22 -1.24 15 14 C -0.05 -0.93 10.06 22.43 0.23 -0.70 15 15 C -0.20 -5.20 6.45 22.63 0.15 -5.05 15 16 S 0.07 1.82 23.38 -56.49 -1.32 0.50 15 17 C 0.45 16.58 8.92 113.37 1.01 17.59 15 18 O -0.45 -18.62 18.05 19.22 0.35 -18.28 15 19 O -0.27 -10.90 9.85 37.26 0.37 -10.53 15 20 C 0.06 1.93 6.82 22.82 0.16 2.08 15 21 H 0.26 15.35 8.31 -92.70 -0.77 14.58 15 22 H -0.02 -1.50 8.14 -2.39 -0.02 -1.52 15 23 H 0.00 0.21 8.14 -2.38 -0.02 0.19 15 24 H 0.09 3.24 8.03 -2.39 -0.02 3.22 15 25 H 0.05 2.16 8.04 -2.39 -0.02 2.14 15 26 H 0.17 3.15 8.05 -2.91 -0.02 3.13 15 27 H 0.19 1.28 8.06 -2.91 -0.02 1.26 15 28 H 0.18 1.73 8.06 -2.91 -0.02 1.71 15 Total: -1.00 -73.08 269.79 5.76 -67.33 By element: Atomic # 1 Polarization: -7.42 SS G_CDS: 1.18 Total: -6.24 kcal Atomic # 6 Polarization: -25.01 SS G_CDS: 2.87 Total: -22.14 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: 0.28 Total: -57.42 kcal Atomic # 8 Polarization: -29.52 SS G_CDS: 0.71 Total: -28.81 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Atomic # 16 Polarization: 1.82 SS G_CDS: -1.32 Total: 0.50 kcal Total: -73.08 5.76 -67.33 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260060661.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.360 kcal (2) G-P(sol) polarization free energy of solvation -73.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds