Wall clock time and date at job start Mon Mar 30 2020 06:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48492 * 109.47487 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47233 * 300.00179 * 3 2 1 6 6 H 1.48508 * 109.46883 * 59.99983 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 C 1.50699 * 109.46817 * 179.97438 * 9 7 2 11 11 C 1.38251 * 119.97961 * 100.00192 * 10 9 7 12 12 C 1.38402 * 120.05901 * 179.97438 * 11 10 9 13 13 F 1.35098 * 119.99775 * 179.97438 * 12 11 10 14 14 C 1.38558 * 120.00254 * 359.97073 * 12 11 10 15 15 Cl 1.73604 * 120.01775 * 180.02562 * 14 12 11 16 16 C 1.38446 * 119.95923 * 0.02979 * 14 12 11 17 17 F 1.35098 * 120.02507 * 179.97438 * 16 14 12 18 18 C 1.38370 * 119.97706 * 279.72511 * 10 9 7 19 19 F 1.35098 * 120.00730 * 0.02562 * 18 10 9 20 20 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 22 22 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 23 23 H 1.08000 * 119.97116 * 359.95417 * 11 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 6 2.2303 -3.6446 -0.0027 11 6 2.5211 -4.3059 1.1760 12 6 3.4199 -5.3584 1.1769 13 9 3.7036 -6.0034 2.3295 14 6 4.0286 -5.7506 -0.0044 15 17 5.1555 -7.0712 -0.0039 16 6 3.7377 -5.0887 -1.1851 17 9 4.3308 -5.4697 -2.3375 18 6 2.8335 -4.0374 -1.1844 19 9 2.5449 -3.3940 -2.3368 20 1 -0.4849 0.8400 0.0004 21 1 0.6240 -2.5575 0.8880 22 1 0.6247 -2.5562 -0.8920 23 1 2.0469 -4.0007 2.0971 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260061967.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:54 Heat of formation + Delta-G solvation = -126.932709 kcal Electronic energy + Delta-G solvation = -15679.656646 eV Core-core repulsion = 12297.076900 eV Total energy + Delta-G solvation = -3382.579746 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.007 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.23979 -48.93420 -48.19884 -38.69650 -36.64975 -33.60581 -31.44294 -29.83785 -27.49470 -23.94381 -22.88929 -21.32068 -17.95317 -17.64594 -17.33608 -16.69834 -16.16275 -15.90590 -15.38238 -14.90046 -14.69116 -14.61542 -14.04593 -13.51828 -12.73082 -12.62392 -12.50726 -12.45173 -11.67595 -11.38494 -11.08387 -11.00889 -10.77095 -10.71502 -9.96365 -9.65348 -8.61988 -8.59580 -8.27681 -6.22466 -4.28199 0.91067 0.92922 1.85617 3.21591 3.28186 3.31427 3.37590 3.68324 4.14339 4.31312 4.62631 4.84721 4.90867 5.14516 5.39212 5.67416 6.00721 6.20631 6.24459 6.82451 7.22334 7.30822 7.70873 8.00942 8.74710 9.37257 10.87613 Molecular weight = 250.01amu Principal moments of inertia in cm(-1) A = 0.031771 B = 0.006695 C = 0.006120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.103699 B = 4181.340150 C = 4574.328435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.900 3.100 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.521 4.521 8 H 0.060 0.940 9 C 0.047 3.953 10 C -0.006 4.006 11 C -0.131 4.131 12 C 0.128 3.872 13 F -0.122 7.122 14 C -0.117 4.117 15 Cl -0.038 7.038 16 C 0.099 3.901 17 F -0.116 7.116 18 C 0.071 3.929 19 F -0.110 7.110 20 H 0.265 0.735 21 H 0.045 0.955 22 H 0.045 0.955 23 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.799 -10.366 0.967 11.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.727 3.273 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.559 4.559 8 H 0.079 0.921 9 C 0.011 3.989 10 C -0.008 4.008 11 C -0.150 4.150 12 C 0.107 3.893 13 F -0.101 7.101 14 C -0.146 4.146 15 Cl -0.009 7.009 16 C 0.077 3.923 17 F -0.095 7.095 18 C 0.051 3.949 19 F -0.088 7.088 20 H 0.075 0.925 21 H 0.063 0.937 22 H 0.063 0.937 23 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 5.769 -10.384 0.915 11.915 hybrid contribution 0.725 0.684 -0.254 1.028 sum 6.494 -9.701 0.661 11.692 Atomic orbital electron populations 1.69941 1.06061 1.27217 1.49428 1.24972 0.94945 0.99426 0.94576 0.86402 0.80115 0.82980 0.77816 1.19540 1.20700 1.20739 1.20944 0.93094 0.89216 1.52599 0.92138 1.18491 0.92057 0.88352 1.00047 1.20763 0.95594 0.95460 0.88958 1.21073 0.98846 0.94675 1.00388 1.17062 0.97826 0.94033 0.80364 1.91534 1.92238 1.80101 1.46190 1.20433 1.02704 0.98245 0.93188 1.98368 1.59111 1.44642 1.98758 1.16987 0.97026 0.96574 0.81666 1.91539 1.81806 1.90216 1.45920 1.17359 0.99449 0.93751 0.84376 1.91565 1.91774 1.79735 1.45710 0.92527 0.93717 0.93662 0.82288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.77 13.29 55.43 0.74 -24.03 14 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 14 3 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 14 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 14 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 14 6 H -0.28 -6.36 7.11 56.52 0.40 -5.95 14 7 C -0.52 -13.58 9.09 -34.44 -0.31 -13.89 14 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 14 9 C 0.05 1.10 4.83 -29.03 -0.14 0.96 14 10 C -0.01 -0.12 5.08 -104.57 -0.53 -0.66 14 11 C -0.13 -2.15 9.64 -39.52 -0.38 -2.53 14 12 C 0.13 1.98 7.27 -39.40 -0.29 1.70 14 13 F -0.12 -1.81 16.84 2.25 0.04 -1.77 14 14 C -0.12 -1.85 6.33 -39.39 -0.25 -2.10 14 15 Cl -0.04 -0.53 28.28 -51.86 -1.47 -2.00 14 16 C 0.10 1.69 7.28 -39.35 -0.29 1.40 14 17 F -0.12 -1.96 16.75 2.25 0.04 -1.92 14 18 C 0.07 1.36 7.24 -39.38 -0.29 1.07 14 19 F -0.11 -2.27 16.57 2.25 0.04 -2.23 14 20 H 0.27 6.97 8.31 -40.82 -0.34 6.63 14 21 H 0.04 1.05 8.00 -51.93 -0.42 0.63 14 22 H 0.05 1.13 7.93 -51.93 -0.41 0.72 14 23 H 0.16 2.34 8.04 -52.49 -0.42 1.92 14 LS Contribution 244.81 15.07 3.69 3.69 Total: -1.00 -26.45 244.81 -5.31 -31.76 By element: Atomic # 1 Polarization: -5.86 SS G_CDS: -0.79 Total: -6.65 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: -2.57 Total: -12.45 kcal Atomic # 7 Polarization: -24.77 SS G_CDS: 0.74 Total: -24.03 kcal Atomic # 9 Polarization: -6.03 SS G_CDS: 0.11 Total: -5.92 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.47 Total: -2.00 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -26.45 -5.31 -31.76 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260061967.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.175 kcal (2) G-P(sol) polarization free energy of solvation -26.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds