Wall clock time and date at job start Mon Mar 30 2020 06:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48492 * 109.47487 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47233 * 300.00179 * 3 2 1 6 6 H 1.48508 * 109.46883 * 59.99983 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 C 1.50699 * 109.46817 * 179.97438 * 9 7 2 11 11 C 1.38251 * 119.97961 * 100.00192 * 10 9 7 12 12 C 1.38402 * 120.05901 * 179.97438 * 11 10 9 13 13 F 1.35098 * 119.99775 * 179.97438 * 12 11 10 14 14 C 1.38558 * 120.00254 * 359.97073 * 12 11 10 15 15 Cl 1.73604 * 120.01775 * 180.02562 * 14 12 11 16 16 C 1.38446 * 119.95923 * 0.02979 * 14 12 11 17 17 F 1.35098 * 120.02507 * 179.97438 * 16 14 12 18 18 C 1.38370 * 119.97706 * 279.72511 * 10 9 7 19 19 F 1.35098 * 120.00730 * 0.02562 * 18 10 9 20 20 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 22 22 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 23 23 H 1.08000 * 119.97116 * 359.95417 * 11 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 6 2.2303 -3.6446 -0.0027 11 6 2.5211 -4.3059 1.1760 12 6 3.4199 -5.3584 1.1769 13 9 3.7036 -6.0034 2.3295 14 6 4.0286 -5.7506 -0.0044 15 17 5.1555 -7.0712 -0.0039 16 6 3.7377 -5.0887 -1.1851 17 9 4.3308 -5.4697 -2.3375 18 6 2.8335 -4.0374 -1.1844 19 9 2.5449 -3.3940 -2.3368 20 1 -0.4849 0.8400 0.0004 21 1 0.6240 -2.5575 0.8880 22 1 0.6247 -2.5562 -0.8920 23 1 2.0469 -4.0007 2.0971 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260061967.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:53 Heat of formation + Delta-G solvation = -139.560125 kcal Electronic energy + Delta-G solvation = -15680.204212 eV Core-core repulsion = 12297.076900 eV Total energy + Delta-G solvation = -3383.127312 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.007 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.66057 -50.19040 -49.69380 -40.10650 -37.90081 -35.47197 -33.13035 -31.22964 -29.22648 -25.73087 -24.27464 -22.90263 -19.35065 -19.06638 -18.76190 -18.57711 -17.65957 -17.24038 -16.67973 -16.60941 -16.20251 -16.11456 -15.46617 -15.00313 -14.47413 -14.26668 -13.89468 -13.78467 -13.40292 -13.10206 -12.61702 -12.57544 -12.31419 -12.27679 -11.80308 -11.49061 -10.63229 -9.99980 -9.72820 -8.24734 -6.36632 -0.47099 -0.45591 0.58147 1.41038 1.43338 1.54652 1.92379 2.31688 2.41018 2.76098 3.09029 3.24918 3.42892 3.50452 3.98384 4.34205 4.53528 4.68577 4.86529 5.24752 5.41095 5.47284 5.68151 6.04456 6.73371 7.32288 8.85574 Molecular weight = 250.01amu Principal moments of inertia in cm(-1) A = 0.031771 B = 0.006695 C = 0.006120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.103699 B = 4181.340150 C = 4574.328435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.013 3.987 3 Si 0.961 3.039 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.274 1.274 7 C -0.533 4.533 8 H 0.057 0.943 9 C 0.054 3.946 10 C -0.023 4.023 11 C -0.116 4.116 12 C 0.142 3.858 13 F -0.111 7.111 14 C -0.108 4.108 15 Cl -0.015 7.015 16 C 0.104 3.896 17 F -0.114 7.114 18 C 0.056 3.944 19 F -0.126 7.126 20 H 0.267 0.733 21 H 0.038 0.962 22 H 0.018 0.982 23 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.172 -11.043 1.783 13.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.187 4.187 3 Si 0.786 3.214 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.199 1.199 7 C -0.570 4.570 8 H 0.076 0.924 9 C 0.018 3.982 10 C -0.024 4.024 11 C -0.135 4.135 12 C 0.122 3.878 13 F -0.089 7.089 14 C -0.137 4.137 15 Cl 0.014 6.986 16 C 0.083 3.917 17 F -0.092 7.092 18 C 0.036 3.964 19 F -0.105 7.105 20 H 0.076 0.924 21 H 0.056 0.944 22 H 0.036 0.964 23 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 7.155 -11.078 1.735 13.301 hybrid contribution 0.350 0.759 -0.485 0.967 sum 7.505 -10.319 1.251 12.820 Atomic orbital electron populations 1.70040 1.07425 1.28110 1.50612 1.25787 0.95723 1.02794 0.94372 0.85453 0.79001 0.79061 0.77930 1.19019 1.20583 1.19915 1.21279 0.93177 0.90717 1.51871 0.92432 1.18190 0.92435 0.89256 0.98358 1.20359 0.96164 0.95566 0.90356 1.21125 0.98369 0.94111 0.99915 1.16863 0.97009 0.93395 0.80547 1.91572 1.92019 1.79749 1.45593 1.20493 1.02326 0.98197 0.92660 1.98386 1.58143 1.43337 1.98697 1.16832 0.96618 0.96118 0.82173 1.91545 1.81653 1.90092 1.45951 1.17499 1.00484 0.94651 0.83798 1.91515 1.92095 1.80289 1.46578 0.92360 0.94364 0.96388 0.80508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.16 13.29 21.45 0.28 -51.87 14 2 C 0.01 0.68 5.46 84.66 0.46 1.14 14 3 Si 0.96 42.19 29.54 68.60 2.03 44.22 14 4 H -0.27 -11.35 7.11 99.48 0.71 -10.64 14 5 H -0.28 -12.17 7.11 99.48 0.71 -11.46 14 6 H -0.27 -11.60 7.11 99.48 0.71 -10.89 14 7 C -0.53 -28.03 9.09 25.60 0.23 -27.80 14 8 H 0.06 2.99 7.74 -2.91 -0.02 2.97 14 9 C 0.05 2.59 4.83 29.10 0.14 2.73 14 10 C -0.02 -0.89 5.08 -19.83 -0.10 -0.99 14 11 C -0.12 -3.62 9.64 22.31 0.22 -3.40 14 12 C 0.14 4.04 7.27 22.39 0.16 4.21 14 13 F -0.11 -2.91 16.84 44.97 0.76 -2.15 14 14 C -0.11 -3.15 6.33 22.40 0.14 -3.00 14 15 Cl -0.01 -0.37 28.28 -2.72 -0.08 -0.45 14 16 C 0.10 3.40 7.28 22.42 0.16 3.56 14 17 F -0.11 -3.67 16.75 44.97 0.75 -2.91 14 18 C 0.06 2.13 7.24 22.40 0.16 2.29 14 19 F -0.13 -5.33 16.57 44.97 0.74 -4.58 14 20 H 0.27 14.22 8.31 -92.71 -0.77 13.45 14 21 H 0.04 1.83 8.00 -2.39 -0.02 1.81 14 22 H 0.02 0.94 7.93 -2.39 -0.02 0.92 14 23 H 0.18 4.82 8.04 -2.91 -0.02 4.80 14 Total: -1.00 -55.41 244.81 7.34 -48.07 By element: Atomic # 1 Polarization: -10.33 SS G_CDS: 1.27 Total: -9.06 kcal Atomic # 6 Polarization: -22.85 SS G_CDS: 1.58 Total: -21.27 kcal Atomic # 7 Polarization: -52.16 SS G_CDS: 0.28 Total: -51.87 kcal Atomic # 9 Polarization: -11.90 SS G_CDS: 2.26 Total: -9.64 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -0.08 Total: -0.45 kcal Total: -55.41 7.34 -48.07 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260061967.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.490 kcal (2) G-P(sol) polarization free energy of solvation -55.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds