Wall clock time and date at job start Mon Mar 30 2020 06:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30680 * 1 3 3 Si 1.86798 * 120.00235 * 2 1 4 4 H 1.48501 * 109.46932 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46872 * 300.00108 * 3 2 1 6 6 H 1.48504 * 109.46980 * 60.00207 * 3 2 1 7 7 C 1.40095 * 119.99660 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00292 * 179.97438 * 7 2 1 9 9 C 1.41293 * 119.99967 * 0.02562 * 7 2 1 10 10 N 1.33988 * 118.38462 * 359.97438 * 9 7 2 11 11 C 1.32058 * 121.25296 * 180.02562 * 10 9 7 12 12 O 1.35296 * 121.10423 * 180.02562 * 11 10 9 13 13 C 1.46259 * 117.78402 * 0.02562 * 11 10 9 14 14 C 1.39487 * 122.16922 * 179.97438 * 13 11 10 15 15 C 1.36741 * 119.54394 * 179.73971 * 14 13 11 16 16 C 1.39172 * 120.97110 * 0.26382 * 15 14 13 17 17 C 1.36442 * 121.06418 * 359.97438 * 16 15 14 18 18 Cl 1.73598 * 120.26198 * 180.02562 * 17 16 15 19 19 C 1.40718 * 119.47722 * 0.02562 * 17 16 15 20 20 N 1.32844 * 118.38421 * 180.52857 * 9 7 2 21 21 H 0.97002 * 119.99908 * 359.97438 * 1 2 3 22 22 H 0.96698 * 114.00339 * 269.97755 * 12 11 10 23 23 H 1.08002 * 120.23148 * 0.02562 * 14 13 11 24 24 H 1.08000 * 119.51232 * 180.23309 * 15 14 13 25 25 H 1.08007 * 119.46743 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.7008 1.3462 -0.0006 5 1 1.8821 2.3964 -1.2125 6 1 1.8821 2.3964 1.2126 7 6 2.0072 -1.2133 0.0005 8 1 3.0872 -1.2134 0.0001 9 6 1.3007 -2.4369 0.0005 10 7 -0.0387 -2.3990 0.0005 11 6 -0.7554 -3.5082 0.0010 12 8 -2.1078 -3.4664 0.0005 13 6 -0.0387 -4.7831 0.0022 14 6 -0.7040 -6.0091 0.0033 15 6 0.0200 -7.1691 -0.0011 16 6 1.4115 -7.1449 -0.0011 17 6 2.0951 -5.9640 0.0026 18 17 3.8310 -5.9581 0.0018 19 6 1.3818 -4.7510 0.0072 20 7 1.9969 -3.5682 0.0118 21 1 -0.4850 0.8401 0.0004 22 1 -2.5013 -3.4540 0.8837 23 1 -1.7835 -6.0420 0.0030 24 1 -0.4957 -8.1180 -0.0040 25 1 1.9591 -8.0758 -0.0050 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260225233.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:21 Heat of formation + Delta-G solvation = -8.057512 kcal Electronic energy + Delta-G solvation = -15374.091471 eV Core-core repulsion = 12570.816032 eV Total energy + Delta-G solvation = -2803.275439 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.025 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.42114 -38.71856 -38.13192 -37.02242 -35.48018 -33.38755 -31.74775 -30.93522 -28.27481 -24.90921 -24.18964 -22.76138 -20.65966 -19.28812 -18.60961 -18.08531 -17.08921 -16.54756 -15.96041 -15.59375 -15.33886 -14.95117 -14.67193 -13.60927 -13.43363 -13.21207 -13.08962 -12.86017 -12.76118 -12.42554 -12.21038 -11.98034 -11.67942 -11.24010 -11.13781 -10.88908 -9.88682 -9.51499 -9.01316 -8.61167 -6.82554 -0.34458 0.27665 1.16240 1.37762 1.41482 1.45934 1.56070 2.14164 2.20717 2.72954 2.82098 3.72808 3.77340 3.95543 4.11406 4.34959 4.43864 4.68415 4.91332 4.97637 5.10649 5.33503 5.46157 5.58893 5.96733 6.01816 6.20476 6.42247 6.78882 6.94370 8.03582 8.17099 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.024625 B = 0.008308 C = 0.006229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.781638 B = 3369.609356 C = 4493.994731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.728 5.728 2 C 0.021 3.979 3 Si 1.005 2.995 4 H -0.255 1.255 5 H -0.259 1.259 6 H -0.256 1.256 7 C -0.398 4.398 8 H 0.097 0.903 9 C 0.373 3.627 10 N -0.517 5.517 11 C 0.375 3.625 12 O -0.474 6.474 13 C -0.282 4.282 14 C -0.029 4.029 15 C -0.185 4.185 16 C -0.049 4.049 17 C -0.098 4.098 18 Cl -0.076 7.076 19 C 0.196 3.804 20 N -0.643 5.643 21 H 0.292 0.708 22 H 0.417 0.583 23 H 0.150 0.850 24 H 0.166 0.834 25 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.490 -6.753 1.776 7.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.348 5.348 2 C -0.205 4.205 3 Si 0.822 3.178 4 H -0.179 1.179 5 H -0.183 1.183 6 H -0.180 1.180 7 C -0.432 4.432 8 H 0.115 0.885 9 C 0.140 3.860 10 N -0.242 5.242 11 C 0.164 3.836 12 O -0.283 6.283 13 C -0.291 4.291 14 C -0.049 4.049 15 C -0.205 4.205 16 C -0.070 4.070 17 C -0.127 4.127 18 Cl -0.048 7.048 19 C 0.060 3.940 20 N -0.368 5.368 21 H 0.103 0.897 22 H 0.278 0.722 23 H 0.168 0.832 24 H 0.184 0.816 25 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -1.887 -5.637 1.197 6.064 hybrid contribution -0.164 0.056 0.407 0.443 sum -2.051 -5.581 1.604 6.159 Atomic orbital electron populations 1.70169 1.09030 1.30590 1.24998 1.27236 0.96017 1.04979 0.92291 0.84823 0.79111 0.74292 0.79525 1.17860 1.18344 1.18020 1.20010 0.95498 0.88672 1.38978 0.88472 1.20015 0.84197 0.92519 0.89279 1.68911 1.08920 1.29534 1.16822 1.21383 0.84916 0.87622 0.89676 1.84506 1.12957 1.95680 1.35203 1.20328 0.94128 0.95480 1.19196 1.21004 1.00742 0.90207 0.92955 1.20913 0.92370 0.99132 1.08044 1.21066 0.95247 0.95903 0.94753 1.20439 0.84171 0.93239 1.14869 1.98273 1.10345 1.98869 1.97285 1.18905 0.89806 0.92813 0.92496 1.68954 1.38574 0.97134 1.32128 0.89700 0.72158 0.83194 0.81611 0.82514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -36.82 11.35 21.85 0.25 -36.57 15 2 C 0.02 1.00 5.50 85.31 0.47 1.47 15 3 Si 1.00 36.11 29.56 68.60 2.03 38.13 15 4 H -0.26 -9.09 7.11 99.48 0.71 -8.39 15 5 H -0.26 -8.84 7.11 99.48 0.71 -8.13 15 6 H -0.26 -8.61 7.11 99.48 0.71 -7.90 15 7 C -0.40 -21.87 9.33 23.47 0.22 -21.65 15 8 H 0.10 5.21 7.85 -2.91 -0.02 5.19 15 9 C 0.37 21.54 7.34 135.10 0.99 22.53 15 10 N -0.52 -28.51 7.75 -302.40 -2.34 -30.85 15 11 C 0.37 17.67 8.07 86.75 0.70 18.37 15 12 O -0.47 -17.82 13.10 -85.82 -1.12 -18.94 15 13 C -0.28 -12.50 5.90 -19.94 -0.12 -12.62 15 14 C -0.03 -0.96 9.66 22.22 0.21 -0.75 15 15 C -0.19 -5.23 9.97 22.14 0.22 -5.01 15 16 C -0.05 -1.54 9.72 22.07 0.21 -1.33 15 17 C -0.10 -4.06 6.34 22.46 0.14 -3.91 15 18 Cl -0.08 -3.00 28.60 -2.72 -0.08 -3.08 15 19 C 0.20 9.63 6.63 40.48 0.27 9.90 15 20 N -0.64 -35.92 9.82 -187.89 -1.84 -37.76 15 21 H 0.29 12.96 8.29 -92.71 -0.77 12.19 15 22 H 0.42 10.90 9.06 -74.06 -0.67 10.23 15 23 H 0.15 3.97 7.81 -2.91 -0.02 3.95 15 24 H 0.17 3.14 8.06 -2.91 -0.02 3.12 15 25 H 0.16 3.79 8.06 -2.91 -0.02 3.77 15 Total: -1.00 -68.85 249.07 0.80 -68.05 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 0.59 Total: 14.03 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: 3.32 Total: 7.00 kcal Atomic # 7 Polarization: -101.25 SS G_CDS: -3.94 Total: -105.19 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -1.12 Total: -18.94 kcal Atomic # 14 Polarization: 36.11 SS G_CDS: 2.03 Total: 38.13 kcal Atomic # 17 Polarization: -3.00 SS G_CDS: -0.08 Total: -3.08 kcal Total: -68.85 0.80 -68.05 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260225233.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.997 kcal (2) G-P(sol) polarization free energy of solvation -68.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds