Wall clock time and date at job start Mon Mar 30 2020 06:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38422 * 122.53644 * 2 1 4 4 C 1.33390 * 114.91870 * 180.02562 * 3 2 1 5 5 S 1.75890 * 109.59395 * 359.97438 * 4 3 2 6 6 C 1.33383 * 122.53751 * 180.02562 * 2 1 3 7 7 C 1.50704 * 125.20741 * 0.02562 * 6 2 1 8 8 H 1.08999 * 109.46481 * 359.97438 * 7 6 2 9 9 C 1.50693 * 109.47478 * 119.97818 * 7 6 2 10 10 H 1.08002 * 120.00118 * 0.02562 * 9 7 6 11 11 C 1.37874 * 120.00073 * 180.02562 * 9 7 6 12 12 N 1.31511 * 120.00102 * 0.02562 * 11 9 7 13 13 Si 1.86805 * 119.99993 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47286 * 89.99659 * 13 11 9 15 15 H 1.48500 * 109.46983 * 210.00024 * 13 11 9 16 16 H 1.48506 * 109.46786 * 329.99587 * 13 11 9 17 17 C 1.52999 * 109.46903 * 239.98388 * 7 6 2 18 18 F 1.39897 * 109.47769 * 59.99509 * 17 7 6 19 19 F 1.39901 * 109.47147 * 180.02562 * 17 7 6 20 20 F 1.39903 * 109.46909 * 299.99145 * 17 7 6 21 21 H 1.09009 * 109.47021 * 269.98112 * 1 2 3 22 22 H 1.08995 * 109.46886 * 29.97323 * 1 2 3 23 23 H 1.08997 * 109.47162 * 149.98381 * 1 2 3 24 24 H 1.08000 * 122.54685 * 0.04229 * 3 2 1 25 25 H 1.07998 * 125.20728 * 180.02562 * 4 3 2 26 26 H 0.96998 * 120.00232 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2515 1.1670 0.0000 4 6 3.5737 0.9901 -0.0005 5 16 3.9387 -0.7305 -0.0004 6 6 2.2245 -1.1245 -0.0005 7 6 1.6537 -2.5192 -0.0017 8 1 0.5650 -2.4662 -0.0016 9 6 2.1209 -3.2522 -1.2327 10 1 2.7669 -2.7578 -1.9430 11 6 1.7236 -4.5541 -1.4521 12 7 0.9366 -5.1561 -0.5875 13 14 2.3034 -5.4630 -2.9777 14 1 3.5785 -6.1640 -2.6817 15 1 1.2756 -6.4551 -3.3834 16 1 2.5168 -4.4921 -4.0811 17 6 2.1279 -3.2654 1.2470 18 9 1.6942 -2.5849 2.3899 19 9 1.5986 -4.5603 1.2457 20 9 3.5253 -3.3334 1.2470 21 1 -0.3633 -0.0003 1.0278 22 1 -0.3633 0.8902 -0.5134 23 1 -0.3633 -0.8898 -0.5141 24 1 1.7965 2.1464 0.0007 25 1 4.3078 1.7822 -0.0002 26 1 0.6568 -6.0719 -0.7421 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260233540.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:49 Heat of formation + Delta-G solvation = -112.188252 kcal Electronic energy + Delta-G solvation = -17004.267353 eV Core-core repulsion = 13760.203776 eV Total energy + Delta-G solvation = -3244.063577 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.033 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.44042 -46.09371 -45.65392 -37.83104 -33.88475 -31.31896 -29.39954 -25.99797 -24.52182 -22.55876 -21.10620 -17.96310 -17.27217 -16.93068 -16.57174 -16.29963 -14.92660 -14.73758 -14.44598 -13.31249 -13.11961 -12.96969 -12.80029 -12.51777 -12.35801 -12.11965 -12.05568 -11.88932 -11.47919 -11.21028 -11.16005 -10.97445 -10.77999 -10.47395 -10.04378 -9.92136 -9.60597 -8.63093 -7.88019 -7.63343 -6.19953 -4.40449 1.67131 2.35127 2.77042 3.21028 3.26381 3.29472 3.33206 4.24265 4.49331 4.95017 5.41736 5.45644 5.79573 5.81531 5.91569 5.99251 6.00157 6.17385 6.43854 6.47673 6.61141 6.94313 7.10879 7.22603 7.64698 7.78690 8.59695 9.25381 10.71998 Molecular weight = 250.03amu Principal moments of inertia in cm(-1) A = 0.023913 B = 0.010769 C = 0.009736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.606585 B = 2599.461576 C = 2875.278393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.132 4.132 3 C -0.125 4.125 4 C -0.251 4.251 5 S 0.118 5.882 6 C -0.128 4.128 7 C 0.074 3.926 8 H 0.085 0.915 9 C -0.529 4.529 10 H 0.074 0.926 11 C 0.062 3.938 12 N -0.845 5.845 13 Si 0.908 3.092 14 H -0.276 1.276 15 H -0.283 1.283 16 H -0.270 1.270 17 C 0.430 3.570 18 F -0.225 7.225 19 F -0.136 7.136 20 F -0.203 7.203 21 H 0.062 0.938 22 H 0.057 0.943 23 H 0.072 0.928 24 H 0.128 0.872 25 H 0.153 0.847 26 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.253 7.383 1.284 7.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.143 4.143 3 C -0.156 4.156 4 C -0.386 4.386 5 S 0.384 5.616 6 C -0.245 4.245 7 C 0.053 3.947 8 H 0.102 0.898 9 C -0.566 4.566 10 H 0.093 0.907 11 C -0.145 4.145 12 N -0.479 5.479 13 Si 0.735 3.265 14 H -0.202 1.202 15 H -0.208 1.208 16 H -0.194 1.194 17 C 0.375 3.625 18 F -0.207 7.207 19 F -0.117 7.117 20 F -0.185 7.185 21 H 0.080 0.920 22 H 0.076 0.924 23 H 0.091 0.909 24 H 0.146 0.854 25 H 0.171 0.829 26 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.529 6.332 1.353 6.951 hybrid contribution -0.836 0.233 -0.498 1.001 sum 1.693 6.565 0.854 6.834 Atomic orbital electron populations 1.20463 0.90296 1.02385 1.01674 1.18730 0.97251 0.91477 1.06828 1.19882 0.92911 0.98574 1.04269 1.25557 0.99592 1.00331 1.13129 1.84390 1.07148 0.97838 1.72266 1.24488 0.95229 0.99198 1.05622 1.18614 0.99004 0.85174 0.91920 0.89787 1.20829 1.32528 0.97808 1.05472 0.90745 1.25132 0.94890 0.97355 0.97127 1.70364 1.31664 1.13252 1.32632 0.86305 0.78604 0.79382 0.82217 1.20193 1.20838 1.19416 1.22683 0.74556 0.80492 0.84768 1.93025 1.89868 1.81086 1.56733 1.93421 1.85187 1.37273 1.95793 1.93001 1.32157 1.96519 1.96803 0.91957 0.92393 0.90909 0.85378 0.82893 0.92323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.48 9.70 36.01 0.35 -1.13 15 2 C -0.13 -2.52 5.80 -106.25 -0.62 -3.13 15 3 C -0.12 -2.08 9.98 -41.21 -0.41 -2.49 15 4 C -0.25 -4.12 11.23 29.04 0.33 -3.80 15 5 S 0.12 2.32 21.74 -107.50 -2.34 -0.02 15 6 C -0.13 -2.77 4.77 -36.00 -0.17 -2.95 15 7 C 0.07 1.82 2.15 -92.93 -0.20 1.62 15 8 H 0.08 2.11 6.26 -51.93 -0.33 1.79 15 9 C -0.53 -13.86 8.20 -34.44 -0.28 -14.15 15 10 H 0.07 1.95 7.74 -52.49 -0.41 1.54 15 11 C 0.06 1.64 5.20 -17.82 -0.09 1.54 15 12 N -0.85 -22.99 9.51 55.43 0.53 -22.46 15 13 Si 0.91 20.56 29.54 -169.99 -5.02 15.54 15 14 H -0.28 -6.28 7.11 56.52 0.40 -5.87 15 15 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 16 H -0.27 -6.01 7.11 56.52 0.40 -5.61 15 17 C 0.43 10.82 2.67 37.16 0.10 10.92 15 18 F -0.23 -5.36 17.02 2.25 0.04 -5.32 15 19 F -0.14 -3.68 12.91 2.25 0.03 -3.66 15 20 F -0.20 -5.07 15.39 2.25 0.03 -5.04 15 21 H 0.06 0.97 8.14 -51.92 -0.42 0.55 15 22 H 0.06 0.80 8.13 -51.93 -0.42 0.38 15 23 H 0.07 1.30 6.65 -51.93 -0.35 0.95 15 24 H 0.13 1.75 8.06 -52.49 -0.42 1.33 15 25 H 0.15 2.02 8.06 -52.49 -0.42 1.59 15 26 H 0.27 6.89 8.31 -40.82 -0.34 6.55 15 LS Contribution 248.47 15.07 3.74 3.74 Total: -1.00 -27.59 248.47 -5.89 -33.47 By element: Atomic # 1 Polarization: -0.80 SS G_CDS: -1.90 Total: -2.70 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: -1.00 Total: -13.56 kcal Atomic # 7 Polarization: -22.99 SS G_CDS: 0.53 Total: -22.46 kcal Atomic # 9 Polarization: -14.12 SS G_CDS: 0.10 Total: -14.01 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: 2.32 SS G_CDS: -2.34 Total: -0.02 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -27.59 -5.89 -33.47 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260233540.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.715 kcal (2) G-P(sol) polarization free energy of solvation -27.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds