Wall clock time and date at job start Mon Mar 30 2020 06:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38422 * 122.53644 * 2 1 4 4 C 1.33390 * 114.91870 * 180.02562 * 3 2 1 5 5 S 1.75890 * 109.59395 * 359.97438 * 4 3 2 6 6 C 1.33383 * 122.53751 * 180.02562 * 2 1 3 7 7 C 1.50704 * 125.20741 * 0.02562 * 6 2 1 8 8 H 1.08999 * 109.46481 * 359.97438 * 7 6 2 9 9 C 1.50693 * 109.47478 * 119.97818 * 7 6 2 10 10 H 1.08002 * 120.00118 * 0.02562 * 9 7 6 11 11 C 1.37874 * 120.00073 * 180.02562 * 9 7 6 12 12 N 1.31511 * 120.00102 * 0.02562 * 11 9 7 13 13 Si 1.86805 * 119.99993 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47286 * 89.99659 * 13 11 9 15 15 H 1.48500 * 109.46983 * 210.00024 * 13 11 9 16 16 H 1.48506 * 109.46786 * 329.99587 * 13 11 9 17 17 C 1.52999 * 109.46903 * 239.98388 * 7 6 2 18 18 F 1.39897 * 109.47769 * 59.99509 * 17 7 6 19 19 F 1.39901 * 109.47147 * 180.02562 * 17 7 6 20 20 F 1.39903 * 109.46909 * 299.99145 * 17 7 6 21 21 H 1.09009 * 109.47021 * 269.98112 * 1 2 3 22 22 H 1.08995 * 109.46886 * 29.97323 * 1 2 3 23 23 H 1.08997 * 109.47162 * 149.98381 * 1 2 3 24 24 H 1.08000 * 122.54685 * 0.04229 * 3 2 1 25 25 H 1.07998 * 125.20728 * 180.02562 * 4 3 2 26 26 H 0.96998 * 120.00232 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2515 1.1670 0.0000 4 6 3.5737 0.9901 -0.0005 5 16 3.9387 -0.7305 -0.0004 6 6 2.2245 -1.1245 -0.0005 7 6 1.6537 -2.5192 -0.0017 8 1 0.5650 -2.4662 -0.0016 9 6 2.1209 -3.2522 -1.2327 10 1 2.7669 -2.7578 -1.9430 11 6 1.7236 -4.5541 -1.4521 12 7 0.9366 -5.1561 -0.5875 13 14 2.3034 -5.4630 -2.9777 14 1 3.5785 -6.1640 -2.6817 15 1 1.2756 -6.4551 -3.3834 16 1 2.5168 -4.4921 -4.0811 17 6 2.1279 -3.2654 1.2470 18 9 1.6942 -2.5849 2.3899 19 9 1.5986 -4.5603 1.2457 20 9 3.5253 -3.3334 1.2470 21 1 -0.3633 -0.0003 1.0278 22 1 -0.3633 0.8902 -0.5134 23 1 -0.3633 -0.8898 -0.5141 24 1 1.7965 2.1464 0.0007 25 1 4.3078 1.7822 -0.0002 26 1 0.6568 -6.0719 -0.7421 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260233540.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:49 Heat of formation + Delta-G solvation = -126.268529 kcal Electronic energy + Delta-G solvation = -17004.877920 eV Core-core repulsion = 13760.203776 eV Total energy + Delta-G solvation = -3244.674144 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.033 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.44075 -48.07183 -47.71304 -39.27434 -35.75755 -33.06890 -30.89009 -27.59517 -26.49683 -24.10728 -22.80090 -19.64245 -19.15778 -18.71578 -18.46320 -18.11901 -16.82233 -16.43825 -15.93263 -15.06241 -14.88026 -14.71703 -14.49787 -14.44145 -14.27421 -13.98897 -13.97401 -13.54459 -12.93593 -12.86277 -12.73113 -12.62630 -12.44504 -12.25622 -11.84198 -11.56670 -11.37768 -10.62973 -9.36585 -9.11419 -8.18841 -6.45259 0.22897 0.89464 1.34403 1.41153 1.42838 1.53255 1.90673 2.35940 2.52560 2.94915 3.69935 3.84024 3.91120 4.19573 4.42139 4.58277 4.72759 4.79986 4.88621 5.00695 5.22233 5.28795 5.61288 5.70118 5.72779 5.90569 6.57148 7.23321 8.72858 Molecular weight = 250.03amu Principal moments of inertia in cm(-1) A = 0.023913 B = 0.010769 C = 0.009736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.606585 B = 2599.461576 C = 2875.278393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.122 4.122 3 C -0.132 4.132 4 C -0.221 4.221 5 S 0.076 5.924 6 C -0.177 4.177 7 C 0.079 3.921 8 H 0.068 0.932 9 C -0.541 4.541 10 H 0.068 0.932 11 C 0.018 3.982 12 N -0.872 5.872 13 Si 0.966 3.034 14 H -0.277 1.277 15 H -0.276 1.276 16 H -0.264 1.264 17 C 0.428 3.572 18 F -0.219 7.219 19 F -0.151 7.151 20 F -0.204 7.204 21 H 0.072 0.928 22 H 0.091 0.909 23 H 0.051 0.949 24 H 0.169 0.831 25 H 0.193 0.807 26 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.502 9.389 0.731 9.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.134 4.134 3 C -0.162 4.162 4 C -0.356 4.356 5 S 0.341 5.659 6 C -0.294 4.294 7 C 0.058 3.942 8 H 0.086 0.914 9 C -0.578 4.578 10 H 0.086 0.914 11 C -0.187 4.187 12 N -0.507 5.507 13 Si 0.790 3.210 14 H -0.203 1.203 15 H -0.201 1.201 16 H -0.188 1.188 17 C 0.372 3.628 18 F -0.201 7.201 19 F -0.132 7.132 20 F -0.186 7.186 21 H 0.090 0.910 22 H 0.109 0.891 23 H 0.070 0.930 24 H 0.187 0.813 25 H 0.210 0.790 26 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.775 8.346 0.803 8.832 hybrid contribution -0.914 -0.270 -0.275 0.992 sum 1.861 8.076 0.528 8.304 Atomic orbital electron populations 1.20533 0.88943 1.02974 1.02466 1.19238 0.98530 0.91653 1.03971 1.20227 0.92814 0.99295 1.03845 1.25984 1.00474 0.98680 1.10488 1.84421 1.06704 1.01408 1.73387 1.24294 0.96430 0.98470 1.10208 1.18376 0.98107 0.86973 0.90720 0.91408 1.21022 1.32407 0.98254 1.06078 0.91425 1.25880 0.94990 0.98126 0.99672 1.70466 1.32653 1.13460 1.34098 0.85421 0.78088 0.78321 0.79187 1.20268 1.20070 1.18778 1.22794 0.74484 0.80029 0.85448 1.93018 1.89797 1.80837 1.56434 1.93384 1.85432 1.38469 1.95927 1.92989 1.32197 1.96527 1.96861 0.90981 0.89070 0.93012 0.81343 0.78966 0.92316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.82 9.70 71.24 0.69 -2.13 15 2 C -0.12 -4.41 5.80 -20.92 -0.12 -4.53 15 3 C -0.13 -3.86 9.98 21.22 0.21 -3.65 15 4 C -0.22 -6.45 11.23 66.72 0.75 -5.70 15 5 S 0.08 2.91 21.74 -56.49 -1.23 1.68 15 6 C -0.18 -7.62 4.77 24.59 0.12 -7.51 15 7 C 0.08 3.97 2.15 -12.29 -0.03 3.94 15 8 H 0.07 3.53 6.26 -2.39 -0.01 3.52 15 9 C -0.54 -28.80 8.20 25.60 0.21 -28.59 15 10 H 0.07 3.60 7.74 -2.91 -0.02 3.58 15 11 C 0.02 0.94 5.20 84.65 0.44 1.38 15 12 N -0.87 -48.33 9.51 21.45 0.20 -48.13 15 13 Si 0.97 42.36 29.54 68.60 2.03 44.38 15 14 H -0.28 -12.10 7.11 99.48 0.71 -11.39 15 15 H -0.28 -11.67 7.11 99.48 0.71 -10.96 15 16 H -0.26 -11.19 7.11 99.48 0.71 -10.48 15 17 C 0.43 21.92 2.67 71.98 0.19 22.12 15 18 F -0.22 -10.53 17.02 44.97 0.77 -9.76 15 19 F -0.15 -8.41 12.91 44.97 0.58 -7.83 15 20 F -0.20 -10.38 15.39 44.97 0.69 -9.68 15 21 H 0.07 2.11 8.14 -2.38 -0.02 2.09 15 22 H 0.09 2.21 8.13 -2.39 -0.02 2.19 15 23 H 0.05 1.83 6.65 -2.39 -0.02 1.81 15 24 H 0.17 3.61 8.06 -2.91 -0.02 3.59 15 25 H 0.19 4.04 8.06 -2.91 -0.02 4.02 15 26 H 0.27 14.05 8.31 -92.71 -0.77 13.27 15 Total: -1.00 -59.49 248.47 6.72 -52.77 By element: Atomic # 1 Polarization: 0.02 SS G_CDS: 1.21 Total: 1.24 kcal Atomic # 6 Polarization: -27.13 SS G_CDS: 2.46 Total: -24.67 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: 0.20 Total: -48.13 kcal Atomic # 9 Polarization: -29.32 SS G_CDS: 2.04 Total: -27.28 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.38 kcal Atomic # 16 Polarization: 2.91 SS G_CDS: -1.23 Total: 1.68 kcal Total: -59.49 6.72 -52.77 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260233540.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.495 kcal (2) G-P(sol) polarization free energy of solvation -59.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds