Wall clock time and date at job start Mon Mar 30 2020 06:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30590 * 1 3 3 Si 1.86806 * 119.99987 * 2 1 4 4 H 1.48502 * 109.46992 * 0.02562 * 3 2 1 5 5 H 1.48496 * 109.47084 * 120.00155 * 3 2 1 6 6 H 1.48506 * 109.47015 * 240.00304 * 3 2 1 7 7 C 1.40319 * 120.00314 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99840 * 2.48854 * 7 2 1 9 9 C 1.40828 * 120.00339 * 182.49126 * 7 2 1 10 10 N 1.33339 * 119.90150 * 7.12625 * 9 7 2 11 11 C 1.33163 * 119.63159 * 179.97438 * 10 9 7 12 12 C 1.40926 * 121.22384 * 180.02562 * 11 10 9 13 13 C 1.36131 * 119.53782 * 179.97438 * 12 11 10 14 14 Cl 1.73602 * 119.22921 * 180.02562 * 13 12 11 15 15 C 1.39366 * 121.54434 * 359.97438 * 13 12 11 16 16 C 1.36252 * 121.62237 * 0.02562 * 15 13 12 17 17 C 1.40311 * 119.67180 * 359.97438 * 16 15 13 18 18 N 1.34007 * 121.16702 * 180.02562 * 17 16 15 19 19 C 1.31566 * 119.87675 * 179.67279 * 18 17 16 20 20 O 1.35337 * 119.84489 * 180.27697 * 19 18 17 21 21 H 0.97000 * 120.00268 * 174.85336 * 1 2 3 22 22 H 1.07997 * 120.23390 * 359.95938 * 12 11 10 23 23 H 1.08001 * 119.19561 * 179.97438 * 15 13 12 24 24 H 1.07995 * 120.16557 * 180.02562 * 16 15 13 25 25 H 0.96699 * 113.99563 * 270.26141 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2399 1.6178 0.0000 4 1 1.2749 2.7465 0.0006 5 1 3.0937 1.6964 1.2125 6 1 3.0936 1.6965 -1.2126 7 6 2.0076 -1.2152 -0.0005 8 1 1.4683 -2.1501 -0.0416 9 6 3.4148 -1.2158 0.0525 10 7 4.0732 -0.0725 0.2462 11 6 5.4039 -0.0794 0.2959 12 6 6.1335 1.1090 0.4996 13 6 7.4932 1.0623 0.5450 14 17 8.3839 2.5309 0.7970 15 6 8.1870 -0.1371 0.3951 16 6 7.5374 -1.3181 0.1957 17 6 6.1356 -1.3387 0.1387 18 7 5.4661 -2.4832 -0.0556 19 6 4.1512 -2.4742 -0.0984 20 8 3.4756 -3.6312 -0.2890 21 1 -0.4850 -0.8366 -0.0754 22 1 5.6175 2.0502 0.6185 23 1 9.2662 -0.1303 0.4372 24 1 8.0985 -2.2338 0.0828 25 1 3.3120 -3.8425 -1.2183 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260289258.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:17 Heat of formation + Delta-G solvation = -11.829685 kcal Electronic energy + Delta-G solvation = -15394.101085 eV Core-core repulsion = 12590.662072 eV Total energy + Delta-G solvation = -2803.439013 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.025 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.90760 -37.64268 -36.37085 -35.44937 -34.30172 -33.30545 -30.28460 -29.09589 -26.47636 -23.46138 -22.28792 -21.48033 -19.29862 -18.45238 -17.35543 -16.87416 -15.54507 -14.90876 -14.55788 -13.86964 -13.76556 -13.56231 -13.39372 -12.59439 -12.33788 -12.00415 -11.57870 -11.52005 -11.29637 -11.01426 -10.61938 -10.40099 -10.24345 -10.17090 -9.57901 -9.40335 -8.16824 -8.00219 -7.80326 -7.47071 -5.31207 0.98805 1.48543 2.46982 2.80521 3.10276 3.39700 3.63246 3.76620 4.14506 4.24826 4.39749 5.00722 5.08748 5.26399 5.46831 5.53366 5.87782 5.95592 6.14738 6.52991 6.54465 6.77464 6.85672 6.88498 7.13725 7.35134 7.59306 7.86265 8.17559 8.43008 8.97083 9.43570 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.023184 B = 0.009155 C = 0.006595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.443935 B = 3057.663248 C = 4244.781763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.758 5.758 2 C 0.039 3.961 3 Si 1.144 2.856 4 H -0.324 1.324 5 H -0.270 1.270 6 H -0.285 1.285 7 C -0.392 4.392 8 H 0.102 0.898 9 C 0.191 3.809 10 N -0.571 5.571 11 C 0.184 3.816 12 C -0.140 4.140 13 C 0.013 3.987 14 Cl -0.091 7.091 15 C -0.188 4.188 16 C -0.024 4.024 17 C -0.030 4.030 18 N -0.450 5.450 19 C 0.259 3.741 20 O -0.474 6.474 21 H 0.293 0.707 22 H 0.133 0.867 23 H 0.123 0.877 24 H 0.127 0.873 25 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.566 0.600 -1.396 7.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.376 5.376 2 C -0.188 4.188 3 Si 0.976 3.024 4 H -0.256 1.256 5 H -0.197 1.197 6 H -0.212 1.212 7 C -0.425 4.425 8 H 0.120 0.880 9 C 0.061 3.939 10 N -0.298 5.298 11 C 0.051 3.949 12 C -0.161 4.161 13 C -0.015 4.015 14 Cl -0.063 7.063 15 C -0.209 4.209 16 C -0.044 4.044 17 C -0.150 4.150 18 N -0.171 5.171 19 C 0.050 3.950 20 O -0.279 6.279 21 H 0.105 0.895 22 H 0.151 0.849 23 H 0.141 0.859 24 H 0.145 0.855 25 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 7.451 2.205 -0.692 7.801 hybrid contribution 0.072 -1.951 -0.522 2.020 sum 7.523 0.254 -1.213 7.624 Atomic orbital electron populations 1.70591 1.08249 1.33791 1.24999 1.28177 0.95168 1.06613 0.88798 0.81981 0.70966 0.68967 0.80453 1.25625 1.19655 1.21244 1.21205 0.90198 0.97375 1.33751 0.88027 1.20594 0.94834 0.86634 0.91842 1.67719 1.05750 1.25200 1.31141 1.20103 0.90392 0.92057 0.92327 1.20370 0.91276 0.97773 1.06689 1.20335 0.91611 0.86714 1.02880 1.98324 1.76051 1.36643 1.95235 1.20135 0.99538 0.90649 1.10603 1.20372 0.91519 0.97184 0.95306 1.19738 0.93802 0.88112 1.13359 1.67682 1.08700 1.28760 1.11914 1.21584 0.86985 0.85896 1.00541 1.84642 1.74332 1.38201 1.30689 0.89526 0.84937 0.85855 0.85474 0.75638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.08 13.64 55.57 0.76 -17.32 15 2 C 0.04 0.95 5.52 -17.30 -0.10 0.85 15 3 Si 1.14 26.13 25.57 -169.99 -4.35 21.78 15 4 H -0.32 -7.26 7.11 56.52 0.40 -6.85 15 5 H -0.27 -6.28 6.68 56.52 0.38 -5.91 15 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 7 C -0.39 -9.40 9.42 -37.82 -0.36 -9.75 15 8 H 0.10 2.35 7.60 -52.48 -0.40 1.95 15 9 C 0.19 4.64 6.53 -82.87 -0.54 4.09 15 10 N -0.57 -14.07 4.67 -6.37 -0.03 -14.10 15 11 C 0.18 4.24 6.73 -82.95 -0.56 3.68 15 12 C -0.14 -2.83 9.74 -39.32 -0.38 -3.21 15 13 C 0.01 0.23 6.26 -39.92 -0.25 -0.02 15 14 Cl -0.09 -1.37 28.89 -51.86 -1.50 -2.87 15 15 C -0.19 -3.12 9.67 -39.88 -0.39 -3.51 15 16 C -0.02 -0.44 9.99 -39.52 -0.39 -0.84 15 17 C -0.03 -0.66 6.73 -82.82 -0.56 -1.21 15 18 N -0.45 -10.16 10.48 -8.01 -0.08 -10.24 15 19 C 0.26 5.86 7.93 -14.30 -0.11 5.75 15 20 O -0.47 -9.24 12.79 -17.70 -0.23 -9.47 15 21 H 0.29 6.52 8.72 -40.82 -0.36 6.16 15 22 H 0.13 2.60 8.06 -52.49 -0.42 2.17 15 23 H 0.12 1.69 8.06 -52.49 -0.42 1.27 15 24 H 0.13 2.01 8.06 -52.49 -0.42 1.59 15 25 H 0.39 5.51 9.06 45.56 0.41 5.92 15 LS Contribution 244.99 15.07 3.69 3.69 Total: -1.00 -26.79 244.99 -5.80 -32.59 By element: Atomic # 1 Polarization: 0.55 SS G_CDS: -0.43 Total: 0.12 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -3.64 Total: -4.17 kcal Atomic # 7 Polarization: -42.31 SS G_CDS: 0.64 Total: -41.67 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: -0.23 Total: -9.47 kcal Atomic # 14 Polarization: 26.13 SS G_CDS: -4.35 Total: 21.78 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -1.50 Total: -2.87 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -26.79 -5.80 -32.59 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260289258.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.758 kcal (2) G-P(sol) polarization free energy of solvation -26.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds