Wall clock time and date at job start Mon Mar 30 2020 06:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30590 * 1 3 3 Si 1.86806 * 119.99987 * 2 1 4 4 H 1.48502 * 109.46992 * 0.02562 * 3 2 1 5 5 H 1.48496 * 109.47084 * 120.00155 * 3 2 1 6 6 H 1.48506 * 109.47015 * 240.00304 * 3 2 1 7 7 C 1.40319 * 120.00314 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99840 * 2.48854 * 7 2 1 9 9 C 1.40828 * 120.00339 * 182.49126 * 7 2 1 10 10 N 1.33339 * 119.90150 * 7.12625 * 9 7 2 11 11 C 1.33163 * 119.63159 * 179.97438 * 10 9 7 12 12 C 1.40926 * 121.22384 * 180.02562 * 11 10 9 13 13 C 1.36131 * 119.53782 * 179.97438 * 12 11 10 14 14 Cl 1.73602 * 119.22921 * 180.02562 * 13 12 11 15 15 C 1.39366 * 121.54434 * 359.97438 * 13 12 11 16 16 C 1.36252 * 121.62237 * 0.02562 * 15 13 12 17 17 C 1.40311 * 119.67180 * 359.97438 * 16 15 13 18 18 N 1.34007 * 121.16702 * 180.02562 * 17 16 15 19 19 C 1.31566 * 119.87675 * 179.67279 * 18 17 16 20 20 O 1.35337 * 119.84489 * 180.27697 * 19 18 17 21 21 H 0.97000 * 120.00268 * 174.85336 * 1 2 3 22 22 H 1.07997 * 120.23390 * 359.95938 * 12 11 10 23 23 H 1.08001 * 119.19561 * 179.97438 * 15 13 12 24 24 H 1.07995 * 120.16557 * 180.02562 * 16 15 13 25 25 H 0.96699 * 113.99563 * 270.26141 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2399 1.6178 0.0000 4 1 1.2749 2.7465 0.0006 5 1 3.0937 1.6964 1.2125 6 1 3.0936 1.6965 -1.2126 7 6 2.0076 -1.2152 -0.0005 8 1 1.4683 -2.1501 -0.0416 9 6 3.4148 -1.2158 0.0525 10 7 4.0732 -0.0725 0.2462 11 6 5.4039 -0.0794 0.2959 12 6 6.1335 1.1090 0.4996 13 6 7.4932 1.0623 0.5450 14 17 8.3839 2.5309 0.7970 15 6 8.1870 -0.1371 0.3951 16 6 7.5374 -1.3181 0.1957 17 6 6.1356 -1.3387 0.1387 18 7 5.4661 -2.4832 -0.0556 19 6 4.1512 -2.4742 -0.0984 20 8 3.4756 -3.6312 -0.2890 21 1 -0.4850 -0.8366 -0.0754 22 1 5.6175 2.0502 0.6185 23 1 9.2662 -0.1303 0.4372 24 1 8.0985 -2.2338 0.0828 25 1 3.3120 -3.8425 -1.2183 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260289258.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:17 Heat of formation + Delta-G solvation = -31.324700 kcal Electronic energy + Delta-G solvation = -15394.946452 eV Core-core repulsion = 12590.662072 eV Total energy + Delta-G solvation = -2804.284380 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.025 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.56378 -39.17783 -37.83002 -37.03299 -35.95296 -35.01430 -31.91109 -30.68844 -28.14522 -25.12953 -23.96690 -23.05631 -21.01678 -20.08794 -19.01769 -18.45474 -17.15848 -16.44634 -16.17950 -15.62537 -15.42259 -15.17479 -14.96071 -14.26750 -13.84703 -13.56344 -13.23112 -13.16040 -12.88427 -12.57096 -12.15021 -11.99307 -11.89955 -11.75875 -11.36488 -11.17081 -9.90869 -9.70495 -9.35839 -9.22772 -7.08445 -0.60697 -0.16632 1.06580 1.12870 1.42527 1.55805 1.90505 1.94724 2.35929 2.62863 2.64792 3.29300 3.47212 3.69215 3.86914 4.11300 4.27255 4.46235 4.63649 4.96403 5.03235 5.11934 5.26463 5.30609 5.61067 5.65486 5.89307 6.13699 6.59226 6.81230 7.22682 7.65577 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.023184 B = 0.009155 C = 0.006595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.443935 B = 3057.663248 C = 4244.781763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.025 3.975 3 Si 1.171 2.829 4 H -0.320 1.320 5 H -0.281 1.281 6 H -0.294 1.294 7 C -0.419 4.419 8 H 0.101 0.899 9 C 0.182 3.818 10 N -0.591 5.591 11 C 0.149 3.851 12 C -0.154 4.154 13 C 0.019 3.981 14 Cl -0.060 7.060 15 C -0.162 4.162 16 C -0.025 4.025 17 C -0.046 4.046 18 N -0.453 5.453 19 C 0.248 3.752 20 O -0.475 6.475 21 H 0.297 0.703 22 H 0.131 0.869 23 H 0.166 0.834 24 H 0.157 0.843 25 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.383 0.745 -1.374 10.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.200 4.200 3 Si 1.004 2.996 4 H -0.252 1.252 5 H -0.209 1.209 6 H -0.222 1.222 7 C -0.453 4.453 8 H 0.119 0.881 9 C 0.050 3.950 10 N -0.319 5.319 11 C 0.019 3.981 12 C -0.176 4.176 13 C -0.009 4.009 14 Cl -0.031 7.031 15 C -0.182 4.182 16 C -0.044 4.044 17 C -0.166 4.166 18 N -0.174 5.174 19 C 0.040 3.960 20 O -0.282 6.282 21 H 0.109 0.891 22 H 0.149 0.851 23 H 0.183 0.817 24 H 0.174 0.826 25 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 10.284 2.351 -0.684 10.571 hybrid contribution -0.442 -1.940 -0.510 2.054 sum 9.841 0.410 -1.194 9.922 Atomic orbital electron populations 1.70570 1.08253 1.34170 1.26613 1.28439 0.95444 1.07393 0.88713 0.81580 0.70223 0.68484 0.79344 1.25215 1.20903 1.22214 1.21127 0.90349 0.97322 1.36483 0.88106 1.20821 0.95130 0.87518 0.91551 1.67622 1.06998 1.25778 1.31541 1.20511 0.90208 0.93637 0.93742 1.20469 0.92519 0.97030 1.07582 1.20514 0.91059 0.88532 1.00805 1.98344 1.74961 1.34917 1.94865 1.20625 1.01494 0.89312 1.06814 1.20733 0.89949 0.99111 0.94611 1.20253 0.95466 0.87610 1.13316 1.67768 1.08499 1.29061 1.12036 1.21521 0.87155 0.86185 1.01152 1.84580 1.73993 1.36802 1.32820 0.89079 0.85085 0.81679 0.82575 0.73118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -37.76 13.64 21.89 0.30 -37.46 15 2 C 0.02 1.22 5.52 85.38 0.47 1.69 15 3 Si 1.17 54.24 25.57 68.60 1.75 55.99 15 4 H -0.32 -14.30 7.11 99.48 0.71 -13.60 15 5 H -0.28 -13.39 6.68 99.48 0.66 -12.72 15 6 H -0.29 -13.84 7.11 99.48 0.71 -13.13 15 7 C -0.42 -20.61 9.42 23.41 0.22 -20.39 15 8 H 0.10 4.81 7.60 -2.91 -0.02 4.79 15 9 C 0.18 8.97 6.53 41.72 0.27 9.24 15 10 N -0.59 -29.50 4.67 -174.08 -0.81 -30.32 15 11 C 0.15 6.80 6.73 41.75 0.28 7.08 15 12 C -0.15 -6.05 9.74 22.44 0.22 -5.84 15 13 C 0.02 0.62 6.26 22.05 0.14 0.76 15 14 Cl -0.06 -1.58 28.89 -2.72 -0.08 -1.66 15 15 C -0.16 -4.61 9.67 22.08 0.21 -4.40 15 16 C -0.02 -0.81 9.99 22.31 0.22 -0.59 15 17 C -0.05 -1.94 6.73 41.47 0.28 -1.66 15 18 N -0.45 -19.94 10.48 -292.65 -3.07 -23.01 15 19 C 0.25 11.20 7.93 86.91 0.69 11.89 15 20 O -0.47 -18.33 12.79 -86.26 -1.10 -19.43 15 21 H 0.30 13.55 8.72 -92.71 -0.81 12.74 15 22 H 0.13 5.06 8.06 -2.91 -0.02 5.04 15 23 H 0.17 3.43 8.06 -2.91 -0.02 3.40 15 24 H 0.16 4.20 8.06 -2.91 -0.02 4.18 15 25 H 0.41 11.39 9.06 -74.06 -0.67 10.72 15 Total: -1.00 -57.17 244.99 0.51 -56.67 By element: Atomic # 1 Polarization: 0.92 SS G_CDS: 0.51 Total: 1.42 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: 3.01 Total: -2.21 kcal Atomic # 7 Polarization: -87.21 SS G_CDS: -3.58 Total: -90.79 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -1.10 Total: -19.43 kcal Atomic # 14 Polarization: 54.24 SS G_CDS: 1.75 Total: 55.99 kcal Atomic # 17 Polarization: -1.58 SS G_CDS: -0.08 Total: -1.66 kcal Total: -57.17 0.51 -56.67 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260289258.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.344 kcal (2) G-P(sol) polarization free energy of solvation -57.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds