Wall clock time and date at job start Mon Mar 30 2020 06:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99842 * 2 1 4 4 H 1.48508 * 109.47306 * 239.99978 * 3 2 1 5 5 H 1.48502 * 109.47120 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47313 * 120.00049 * 3 2 1 7 7 C 1.37870 * 120.00473 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00915 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99859 * 0.02562 * 7 2 1 10 10 C 1.50699 * 109.47187 * 179.97438 * 9 7 2 11 11 C 1.38255 * 119.97336 * 99.99903 * 10 9 7 12 12 C 1.38371 * 120.04435 * 180.02562 * 11 10 9 13 13 F 1.35106 * 120.00477 * 180.02562 * 12 11 10 14 14 C 1.38658 * 119.99224 * 359.97438 * 12 11 10 15 15 F 1.35104 * 120.02953 * 180.02562 * 14 12 11 16 16 C 1.38445 * 119.94576 * 0.02562 * 14 12 11 17 17 Cl 1.73601 * 120.02431 * 179.72436 * 16 14 12 18 18 C 1.38399 * 119.97495 * 279.99581 * 10 9 7 19 19 F 1.35103 * 119.99390 * 0.02562 * 18 10 9 20 20 H 0.97001 * 120.00531 * 0.02562 * 1 2 3 21 21 H 1.08996 * 109.47160 * 59.99685 * 9 7 2 22 22 H 1.09002 * 109.47020 * 299.99465 * 9 7 2 23 23 H 1.08000 * 119.97550 * 0.02562 * 11 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2304 -3.6445 0.0005 11 6 2.5213 -4.3046 1.1800 12 6 3.4207 -5.3562 1.1818 13 9 3.7039 -6.0010 2.3347 14 6 4.0304 -5.7487 0.0000 15 9 4.9083 -6.7757 0.0007 16 6 3.7389 -5.0874 -1.1809 17 17 4.5066 -5.5725 -2.6605 18 6 2.8380 -4.0348 -1.1801 19 9 2.5533 -3.3887 -2.3320 20 1 -0.4851 0.8400 -0.0004 21 1 0.6248 -2.5571 -0.8896 22 1 0.6242 -2.5567 0.8904 23 1 2.0461 -3.9993 2.1005 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260314504.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:56 Heat of formation + Delta-G solvation = -126.548925 kcal Electronic energy + Delta-G solvation = -15679.569555 eV Core-core repulsion = 12297.006452 eV Total energy + Delta-G solvation = -3382.563104 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.007 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.39387 -48.53197 -48.46317 -38.68930 -36.61720 -33.58670 -31.39843 -30.01490 -27.28801 -23.83110 -23.11340 -21.25838 -18.12020 -17.79934 -17.11989 -16.66704 -16.25083 -15.62466 -15.11140 -14.94779 -14.86039 -14.66068 -14.15170 -13.77034 -12.67975 -12.56728 -12.41579 -12.30767 -11.65249 -11.44484 -11.11751 -10.96222 -10.75780 -10.71166 -9.94288 -9.67658 -8.67042 -8.58168 -8.20938 -6.20746 -4.26682 0.86147 0.96891 1.87752 3.24939 3.28479 3.29757 3.37156 3.70816 4.15169 4.32211 4.55490 4.84097 4.90250 5.15449 5.37429 5.79156 5.92639 6.22217 6.25727 6.81412 7.23842 7.32505 7.71991 8.03056 8.75735 9.38705 10.89133 Molecular weight = 250.01amu Principal moments of inertia in cm(-1) A = 0.026320 B = 0.007339 C = 0.006331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.588270 B = 3814.533756 C = 4421.854958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.065 3.935 3 Si 0.899 3.101 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.050 3.950 10 C -0.037 4.037 11 C -0.101 4.101 12 C 0.069 3.931 13 F -0.126 7.126 14 C 0.072 3.928 15 F -0.120 7.120 16 C -0.092 4.092 17 Cl -0.033 7.033 18 C 0.131 3.869 19 F -0.106 7.106 20 H 0.266 0.734 21 H 0.044 0.956 22 H 0.043 0.957 23 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.489 -9.675 -0.337 11.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.726 3.274 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.560 4.560 8 H 0.077 0.923 9 C 0.014 3.986 10 C -0.038 4.038 11 C -0.120 4.120 12 C 0.049 3.951 13 F -0.104 7.104 14 C 0.051 3.949 15 F -0.098 7.098 16 C -0.121 4.121 17 Cl -0.004 7.004 18 C 0.110 3.890 19 F -0.084 7.084 20 H 0.076 0.924 21 H 0.062 0.938 22 H 0.062 0.938 23 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 5.430 -9.639 -0.479 11.074 hybrid contribution 0.771 0.636 -0.160 1.012 sum 6.202 -9.003 -0.638 10.951 Atomic orbital electron populations 1.69920 1.06055 1.27405 1.49313 1.24956 0.94922 0.99362 0.94580 0.86534 0.79562 0.82389 0.78916 1.19955 1.21047 1.19999 1.20885 0.93013 0.89338 1.52762 0.92281 1.18437 0.91980 0.88274 0.99935 1.20798 0.97210 0.96700 0.89105 1.21057 0.97132 0.93443 1.00323 1.17435 1.00758 0.96317 0.80632 1.91522 1.92525 1.80275 1.46091 1.16747 0.95529 0.90728 0.91881 1.91529 1.65919 1.55364 1.96996 1.20698 1.02426 1.00379 0.88552 1.98377 1.79750 1.90861 1.31431 1.17002 0.96616 0.91520 0.83846 1.91581 1.91572 1.79392 1.45834 0.92442 0.93781 0.93849 0.82252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.75 13.29 55.43 0.74 -24.02 14 2 C 0.06 1.72 5.46 -17.82 -0.10 1.63 14 3 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 14 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 14 5 H -0.29 -6.46 7.11 56.52 0.40 -6.06 14 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 14 7 C -0.52 -13.57 9.09 -34.44 -0.31 -13.88 14 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 14 9 C 0.05 1.17 4.83 -29.03 -0.14 1.03 14 10 C -0.04 -0.71 5.08 -104.56 -0.53 -1.24 14 11 C -0.10 -1.66 9.64 -39.53 -0.38 -2.04 14 12 C 0.07 1.09 7.30 -39.38 -0.29 0.81 14 13 F -0.13 -1.93 17.18 2.25 0.04 -1.89 14 14 C 0.07 1.17 7.28 -39.35 -0.29 0.88 14 15 F -0.12 -1.88 16.75 2.25 0.04 -1.84 14 16 C -0.09 -1.54 6.33 -39.39 -0.25 -1.79 14 17 Cl -0.03 -0.50 28.28 -51.86 -1.47 -1.97 14 18 C 0.13 2.45 7.21 -39.41 -0.28 2.16 14 19 F -0.11 -2.13 16.22 2.25 0.04 -2.09 14 20 H 0.27 7.03 8.31 -40.82 -0.34 6.69 14 21 H 0.04 1.09 7.94 -51.93 -0.41 0.68 14 22 H 0.04 1.02 8.00 -51.93 -0.42 0.60 14 23 H 0.16 2.35 8.04 -52.49 -0.42 1.93 14 LS Contribution 244.82 15.07 3.69 3.69 Total: -1.00 -26.36 244.82 -5.31 -31.67 By element: Atomic # 1 Polarization: -5.89 SS G_CDS: -0.79 Total: -6.68 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: -2.57 Total: -12.44 kcal Atomic # 7 Polarization: -24.75 SS G_CDS: 0.74 Total: -24.02 kcal Atomic # 9 Polarization: -5.94 SS G_CDS: 0.11 Total: -5.82 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.47 Total: -1.97 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -26.36 -5.31 -31.67 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260314504.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.877 kcal (2) G-P(sol) polarization free energy of solvation -26.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds