Wall clock time and date at job start Mon Mar 30 2020 06:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99842 * 2 1 4 4 H 1.48508 * 109.47306 * 239.99978 * 3 2 1 5 5 H 1.48502 * 109.47120 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47313 * 120.00049 * 3 2 1 7 7 C 1.37870 * 120.00473 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00915 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99859 * 0.02562 * 7 2 1 10 10 C 1.50699 * 109.47187 * 179.97438 * 9 7 2 11 11 C 1.38255 * 119.97336 * 99.99903 * 10 9 7 12 12 C 1.38371 * 120.04435 * 180.02562 * 11 10 9 13 13 F 1.35106 * 120.00477 * 180.02562 * 12 11 10 14 14 C 1.38658 * 119.99224 * 359.97438 * 12 11 10 15 15 F 1.35104 * 120.02953 * 180.02562 * 14 12 11 16 16 C 1.38445 * 119.94576 * 0.02562 * 14 12 11 17 17 Cl 1.73601 * 120.02431 * 179.72436 * 16 14 12 18 18 C 1.38399 * 119.97495 * 279.99581 * 10 9 7 19 19 F 1.35103 * 119.99390 * 0.02562 * 18 10 9 20 20 H 0.97001 * 120.00531 * 0.02562 * 1 2 3 21 21 H 1.08996 * 109.47160 * 59.99685 * 9 7 2 22 22 H 1.09002 * 109.47020 * 299.99465 * 9 7 2 23 23 H 1.08000 * 119.97550 * 0.02562 * 11 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2304 -3.6445 0.0005 11 6 2.5213 -4.3046 1.1800 12 6 3.4207 -5.3562 1.1818 13 9 3.7039 -6.0010 2.3347 14 6 4.0304 -5.7487 0.0000 15 9 4.9083 -6.7757 0.0007 16 6 3.7389 -5.0874 -1.1809 17 17 4.5066 -5.5725 -2.6605 18 6 2.8380 -4.0348 -1.1801 19 9 2.5533 -3.3887 -2.3320 20 1 -0.4851 0.8400 -0.0004 21 1 0.6248 -2.5571 -0.8896 22 1 0.6242 -2.5567 0.8904 23 1 2.0461 -3.9993 2.1005 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260314504.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:55 Heat of formation + Delta-G solvation = -139.014287 kcal Electronic energy + Delta-G solvation = -15680.110094 eV Core-core repulsion = 12297.006452 eV Total energy + Delta-G solvation = -3383.103642 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.007 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -50.68965 -50.04797 -49.75337 -40.10080 -37.91708 -35.45322 -33.08203 -31.41017 -29.01853 -25.59359 -24.50842 -22.82132 -19.49382 -19.18770 -18.65757 -18.40572 -17.67855 -17.07701 -16.59463 -16.47870 -16.27613 -16.16133 -15.51970 -15.17381 -14.44827 -14.24870 -13.83830 -13.74600 -13.31582 -13.10162 -12.63883 -12.54430 -12.36933 -12.29558 -11.75452 -11.52685 -10.60442 -10.03152 -9.67772 -8.22449 -6.34440 -0.49884 -0.42658 0.56407 1.43694 1.45054 1.52654 1.92887 2.34588 2.42288 2.77092 3.11277 3.20814 3.43441 3.50881 4.00802 4.32075 4.55422 4.73542 4.83699 5.27285 5.41360 5.49609 5.69900 6.07035 6.75232 7.34396 8.87220 Molecular weight = 250.01amu Principal moments of inertia in cm(-1) A = 0.026320 B = 0.007339 C = 0.006331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.588270 B = 3814.533756 C = 4421.854958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.014 3.986 3 Si 0.958 3.042 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.534 4.534 8 H 0.058 0.942 9 C 0.058 3.942 10 C -0.054 4.054 11 C -0.086 4.086 12 C 0.082 3.918 13 F -0.117 7.117 14 C 0.084 3.916 15 F -0.113 7.113 16 C -0.089 4.089 17 Cl -0.017 7.017 18 C 0.119 3.881 19 F -0.120 7.120 20 H 0.267 0.733 21 H 0.018 0.982 22 H 0.036 0.964 23 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.802 -10.205 0.224 12.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.185 4.185 3 Si 0.783 3.217 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.571 4.571 8 H 0.076 0.924 9 C 0.021 3.979 10 C -0.055 4.055 11 C -0.105 4.105 12 C 0.062 3.938 13 F -0.096 7.096 14 C 0.063 3.937 15 F -0.091 7.091 16 C -0.118 4.118 17 Cl 0.012 6.988 18 C 0.099 3.901 19 F -0.098 7.098 20 H 0.076 0.924 21 H 0.036 0.964 22 H 0.054 0.946 23 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 6.757 -10.184 0.085 12.222 hybrid contribution 0.407 0.684 -0.335 0.863 sum 7.164 -9.501 -0.250 11.902 Atomic orbital electron populations 1.70025 1.07423 1.28179 1.50577 1.25760 0.95676 1.02702 0.94398 0.85598 0.78425 0.78571 0.79117 1.19770 1.20708 1.18995 1.21243 0.93179 0.90791 1.51933 0.92417 1.18137 0.92349 0.89173 0.98247 1.20405 0.97776 0.96777 0.90558 1.21096 0.96613 0.92824 0.99931 1.17256 1.00061 0.95772 0.80734 1.91554 1.92354 1.79999 1.45648 1.16736 0.94989 0.90321 0.91662 1.91555 1.65621 1.54996 1.96947 1.20596 1.01935 0.99730 0.89509 1.98385 1.79278 1.90580 1.30556 1.17075 0.97479 0.92310 0.83264 1.91541 1.91853 1.79874 1.46548 0.92408 0.96406 0.94608 0.80487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.05 13.29 21.44 0.28 -51.76 14 2 C 0.01 0.75 5.46 84.65 0.46 1.22 14 3 Si 0.96 41.98 29.54 68.60 2.03 44.01 14 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 14 5 H -0.28 -12.10 7.11 99.48 0.71 -11.39 14 6 H -0.27 -11.13 7.11 99.48 0.71 -10.43 14 7 C -0.53 -27.87 9.09 25.60 0.23 -27.64 14 8 H 0.06 2.96 7.74 -2.91 -0.02 2.94 14 9 C 0.06 2.72 4.83 29.10 0.14 2.86 14 10 C -0.05 -2.04 5.08 -19.82 -0.10 -2.14 14 11 C -0.09 -2.68 9.64 22.31 0.22 -2.46 14 12 C 0.08 2.39 7.30 22.40 0.16 2.55 14 13 F -0.12 -3.22 17.18 44.97 0.77 -2.45 14 14 C 0.08 2.50 7.28 22.42 0.16 2.67 14 15 F -0.11 -3.21 16.75 44.97 0.75 -2.46 14 16 C -0.09 -2.83 6.33 22.39 0.14 -2.69 14 17 Cl -0.02 -0.49 28.28 -2.72 -0.08 -0.57 14 18 C 0.12 4.39 7.21 22.38 0.16 4.55 14 19 F -0.12 -4.86 16.22 44.97 0.73 -4.13 14 20 H 0.27 14.27 8.31 -92.71 -0.77 13.50 14 21 H 0.02 0.92 7.94 -2.39 -0.02 0.90 14 22 H 0.04 1.71 8.00 -2.39 -0.02 1.69 14 23 H 0.18 4.84 8.04 -2.91 -0.02 4.82 14 Total: -1.00 -54.82 244.82 7.34 -47.48 By element: Atomic # 1 Polarization: -10.32 SS G_CDS: 1.27 Total: -9.05 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: 1.58 Total: -21.08 kcal Atomic # 7 Polarization: -52.05 SS G_CDS: 0.28 Total: -51.76 kcal Atomic # 9 Polarization: -11.30 SS G_CDS: 2.26 Total: -9.04 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -0.08 Total: -0.57 kcal Total: -54.82 7.34 -47.48 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260314504.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.530 kcal (2) G-P(sol) polarization free energy of solvation -54.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds