Wall clock time and date at job start Mon Mar 30 2020 06:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47064 * 179.97438 * 9 7 2 11 11 C 1.38404 * 120.00587 * 89.99696 * 10 9 7 12 12 F 1.35096 * 120.01291 * 359.97438 * 11 10 9 13 13 C 1.38635 * 119.97515 * 180.02562 * 11 10 9 14 14 F 1.35103 * 119.99955 * 179.97438 * 13 11 10 15 15 C 1.38403 * 119.99325 * 0.02562 * 13 11 10 16 16 C 1.38286 * 120.00994 * 359.97438 * 15 13 11 17 17 Cl 1.73603 * 119.98459 * 179.97438 * 16 15 13 18 18 C 1.38397 * 120.00507 * 269.72515 * 10 9 7 19 19 F 1.35098 * 119.99302 * 359.97438 * 18 10 9 20 20 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 22 22 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 23 23 H 1.08005 * 119.98989 * 179.97438 * 15 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 6 2.6800 -4.1707 1.1991 12 9 2.2418 -3.6572 2.3693 13 6 3.5813 -5.2241 1.1983 14 9 4.0211 -5.7377 2.3680 15 6 4.0312 -5.7489 -0.0007 16 6 3.5815 -5.2229 -1.1980 17 17 4.1468 -5.8812 -2.7016 18 6 2.6756 -4.1745 -1.1979 19 9 2.2319 -3.6650 -2.3679 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5567 0.8903 22 1 0.6246 -2.5571 -0.8897 23 1 4.7337 -6.5693 -0.0012 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260374315.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:50 Heat of formation + Delta-G solvation = -141.120840 kcal Electronic energy + Delta-G solvation = -15809.699988 eV Core-core repulsion = 12426.504999 eV Total energy + Delta-G solvation = -3383.194989 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.007 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.61259 -50.07249 -49.68114 -40.05024 -37.74843 -35.59307 -33.29404 -30.98921 -29.35584 -25.83782 -24.05460 -22.99204 -19.39029 -19.19500 -18.75826 -18.49699 -17.52548 -17.21358 -16.63234 -16.59778 -16.07934 -15.97205 -15.62572 -14.79285 -14.60477 -14.43531 -13.90477 -13.80847 -13.30468 -13.19957 -12.63586 -12.59592 -12.23101 -12.21109 -11.79299 -11.61928 -10.67178 -9.96284 -9.70639 -8.28211 -6.41949 -0.54717 -0.33216 0.69546 1.39014 1.40075 1.51039 1.88891 2.37443 2.52251 2.79712 3.05320 3.16382 3.32933 3.71280 4.04049 4.36319 4.51844 4.57645 4.72526 5.15302 5.31340 5.41381 5.61751 5.98225 6.66903 7.26954 8.82396 Molecular weight = 250.01amu Principal moments of inertia in cm(-1) A = 0.022280 B = 0.008295 C = 0.006701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.457608 B = 3374.828622 C = 4177.296222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.010 3.990 3 Si 0.967 3.033 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.537 4.537 8 H 0.058 0.942 9 C 0.059 3.941 10 C -0.095 4.095 11 C 0.083 3.917 12 F -0.127 7.127 13 C 0.079 3.921 14 F -0.117 7.117 15 C -0.084 4.084 16 C -0.050 4.050 17 Cl -0.018 7.018 18 C 0.116 3.884 19 F -0.122 7.122 20 H 0.268 0.732 21 H 0.019 0.981 22 H 0.022 0.978 23 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.938 -12.275 -1.581 15.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.189 4.189 3 Si 0.790 3.210 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.574 4.574 8 H 0.076 0.924 9 C 0.022 3.978 10 C -0.098 4.098 11 C 0.062 3.938 12 F -0.105 7.105 13 C 0.058 3.942 14 F -0.096 7.096 15 C -0.103 4.103 16 C -0.078 4.078 17 Cl 0.011 6.989 18 C 0.096 3.904 19 F -0.100 7.100 20 H 0.077 0.923 21 H 0.037 0.963 22 H 0.040 0.960 23 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 8.814 -12.206 -1.670 15.148 hybrid contribution -0.212 1.156 0.160 1.186 sum 8.602 -11.050 -1.510 14.085 Atomic orbital electron populations 1.70055 1.07628 1.28296 1.50298 1.25885 0.95816 1.03112 0.94082 0.85417 0.78637 0.78184 0.78714 1.19477 1.20272 1.18920 1.21229 0.93114 0.90676 1.52407 0.92400 1.18009 0.92437 0.89668 0.97690 1.20298 1.00636 0.98375 0.90453 1.17419 0.98874 0.95819 0.81670 1.91510 1.88032 1.86162 1.44802 1.17263 0.98378 0.95361 0.83162 1.91550 1.87717 1.85426 1.44890 1.20875 1.01337 1.01833 0.86210 1.20575 0.99690 0.97156 0.90403 1.98392 1.87434 1.84075 1.28979 1.17009 0.97395 0.94802 0.81228 1.91528 1.87700 1.86168 1.44620 0.92268 0.96280 0.95995 0.77826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.89 13.29 21.45 0.28 -54.60 14 2 C 0.01 0.59 5.46 84.66 0.46 1.05 14 3 Si 0.97 43.80 29.54 68.60 2.03 45.82 14 4 H -0.27 -11.78 7.11 99.48 0.71 -11.08 14 5 H -0.28 -12.20 7.11 99.48 0.71 -11.49 14 6 H -0.26 -11.59 7.11 99.48 0.71 -10.89 14 7 C -0.54 -30.19 9.09 25.60 0.23 -29.96 14 8 H 0.06 3.18 7.74 -2.91 -0.02 3.16 14 9 C 0.06 3.09 4.75 29.10 0.14 3.23 14 10 C -0.10 -4.03 5.08 -19.79 -0.10 -4.13 14 11 C 0.08 3.14 7.25 22.40 0.16 3.30 14 12 F -0.13 -5.32 16.39 44.97 0.74 -4.58 14 13 C 0.08 2.31 7.30 22.40 0.16 2.48 14 14 F -0.12 -3.26 17.18 44.97 0.77 -2.48 14 15 C -0.08 -1.95 9.80 22.32 0.22 -1.73 14 16 C -0.05 -1.40 6.32 22.36 0.14 -1.26 14 17 Cl -0.02 -0.42 28.61 -2.72 -0.08 -0.50 14 18 C 0.12 4.28 7.21 22.39 0.16 4.44 14 19 F -0.12 -4.90 16.03 44.97 0.72 -4.17 14 20 H 0.27 14.92 8.31 -92.71 -0.77 14.15 14 21 H 0.02 1.07 7.64 -2.39 -0.02 1.05 14 22 H 0.02 1.22 7.63 -2.39 -0.02 1.20 14 23 H 0.20 2.93 8.06 -2.91 -0.02 2.91 14 Total: -1.00 -61.42 244.01 7.31 -54.10 By element: Atomic # 1 Polarization: -12.26 SS G_CDS: 1.27 Total: -10.99 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: 1.58 Total: -22.59 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: 0.28 Total: -54.60 kcal Atomic # 9 Polarization: -13.47 SS G_CDS: 2.23 Total: -11.24 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -0.08 Total: -0.50 kcal Total: -61.42 7.31 -54.10 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260374315.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.016 kcal (2) G-P(sol) polarization free energy of solvation -61.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds