Wall clock time and date at job start Mon Mar 30 2020 06:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99574 * 2 1 4 4 H 1.48502 * 109.47186 * 269.99936 * 3 2 1 5 5 H 1.48497 * 109.47502 * 30.00239 * 3 2 1 6 6 H 1.48501 * 109.46822 * 150.00132 * 3 2 1 7 7 C 1.37870 * 120.00158 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00389 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99848 * 179.97438 * 7 2 1 10 10 C 1.50707 * 109.47085 * 179.97438 * 9 7 2 11 11 C 1.32175 * 128.03292 * 94.99562 * 10 9 7 12 12 C 1.46862 * 119.25111 * 179.97438 * 11 10 9 13 13 C 1.40886 * 128.68984 * 180.02562 * 12 11 10 14 14 C 1.37467 * 120.61578 * 180.02562 * 13 12 11 15 15 C 1.38371 * 121.01089 * 359.97438 * 14 13 12 16 16 C 1.38687 * 119.32856 * 0.02562 * 15 14 13 17 17 C 1.36630 * 119.79415 * 359.97438 * 16 15 14 18 18 S 1.77399 * 133.89893 * 180.02562 * 17 16 15 19 19 O 1.42099 * 107.72565 * 291.83332 * 18 17 16 20 20 O 1.42102 * 107.72766 * 68.16199 * 18 17 16 21 21 H 0.97003 * 120.00483 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.47383 * 60.00263 * 9 7 2 23 23 H 1.08993 * 109.47142 * 299.99730 * 9 7 2 24 24 H 1.08001 * 120.37398 * 0.02562 * 11 10 9 25 25 H 1.08007 * 119.69342 * 0.02562 * 13 12 11 26 26 H 1.07997 * 119.49469 * 180.02562 * 14 13 12 27 27 H 1.08005 * 120.33214 * 180.02562 * 15 14 13 28 28 H 1.08001 * 120.09918 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0140 -2.6147 -0.0010 11 6 4.3705 -3.3525 -1.0381 12 6 4.8366 -4.7272 -0.8146 13 6 5.2611 -5.6784 -1.7632 14 6 5.6671 -6.9302 -1.3660 15 6 5.6702 -7.2879 -0.0293 16 6 5.2562 -6.3669 0.9214 17 6 4.8521 -5.1219 0.5296 18 16 4.2656 -3.6896 1.3965 19 8 2.9889 -4.0030 1.9360 20 8 5.3491 -3.1685 2.1540 21 1 -0.4851 0.8400 0.0004 22 1 3.8753 -0.6803 0.8889 23 1 3.8745 -0.6799 -0.8911 24 1 4.3205 -2.9487 -2.0385 25 1 5.2676 -5.4217 -2.8123 26 1 5.9894 -7.6452 -2.1084 27 1 5.9918 -8.2744 0.2706 28 1 5.2532 -6.6330 1.9681 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260434231.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:37 Heat of formation + Delta-G solvation = -38.739761 kcal Electronic energy + Delta-G solvation = -15572.032519 eV Core-core repulsion = 12873.010648 eV Total energy + Delta-G solvation = -2699.021871 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.65659 -38.35007 -37.16743 -37.00164 -34.97304 -32.59504 -32.16374 -29.43226 -25.35001 -24.65729 -23.08847 -21.82550 -20.10911 -19.04512 -18.43131 -17.81478 -16.98926 -16.63766 -16.16170 -15.84310 -15.35711 -15.06816 -14.65676 -14.34287 -14.24609 -13.98733 -13.52024 -13.41188 -13.26193 -12.99926 -12.68200 -12.44907 -12.12262 -11.79859 -11.70708 -11.33696 -11.30714 -10.81009 -10.48304 -9.55935 -8.33595 -6.41936 -0.98041 -0.89293 0.03574 0.93704 1.34261 1.38355 1.49773 1.80106 2.27754 2.32506 2.51699 2.98356 3.07405 3.45273 3.67278 3.94891 4.16650 4.21751 4.30527 4.49495 4.57755 4.72329 4.86802 4.91692 4.98444 5.14290 5.24592 5.30436 5.46011 5.76596 6.19063 6.65190 7.21413 8.83117 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.036704 B = 0.006784 C = 0.006421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.676450 B = 4126.300578 C = 4359.693383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.010 3.990 3 Si 0.945 3.055 4 H -0.254 1.254 5 H -0.279 1.279 6 H -0.244 1.244 7 C -0.538 4.538 8 H 0.033 0.967 9 C 0.060 3.940 10 C -0.580 4.580 11 C -0.050 4.050 12 C -0.065 4.065 13 C -0.085 4.085 14 C -0.071 4.071 15 C -0.109 4.109 16 C -0.015 4.015 17 C -0.635 4.635 18 S 2.527 3.473 19 O -0.965 6.965 20 O -0.960 6.960 21 H 0.271 0.729 22 H 0.037 0.963 23 H 0.057 0.943 24 H 0.168 0.832 25 H 0.165 0.835 26 H 0.182 0.818 27 H 0.183 0.817 28 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.685 -14.639 -4.881 22.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.188 4.188 3 Si 0.766 3.234 4 H -0.178 1.178 5 H -0.204 1.204 6 H -0.167 1.167 7 C -0.576 4.576 8 H 0.052 0.948 9 C 0.022 3.978 10 C -0.671 4.671 11 C -0.069 4.069 12 C -0.067 4.067 13 C -0.104 4.104 14 C -0.088 4.088 15 C -0.128 4.128 16 C -0.034 4.034 17 C -0.726 4.726 18 S 2.712 3.288 19 O -0.963 6.963 20 O -0.957 6.957 21 H 0.080 0.920 22 H 0.055 0.945 23 H 0.075 0.925 24 H 0.185 0.815 25 H 0.183 0.817 26 H 0.199 0.801 27 H 0.201 0.799 28 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 15.378 -14.359 -3.916 21.402 hybrid contribution -0.429 0.921 -0.750 1.263 sum 14.950 -13.438 -4.667 20.636 Atomic orbital electron populations 1.70051 1.08332 1.28580 1.51310 1.26004 0.95741 1.03490 0.93552 0.85737 0.79692 0.77855 0.80073 1.17791 1.20392 1.16730 1.21191 0.90418 0.93770 1.52234 0.94833 1.18008 0.94245 0.86438 0.99104 1.31824 1.08090 1.10054 1.17170 1.21744 0.91840 0.90590 1.02774 1.19765 0.99619 0.93461 0.93839 1.21685 0.96124 0.92459 1.00114 1.21810 0.93957 0.95508 0.97547 1.22141 0.97282 1.00655 0.92676 1.20541 0.91476 0.89046 1.02353 1.30065 1.18647 1.14858 1.09077 1.03943 0.73762 0.76278 0.74822 1.93570 1.41102 1.84355 1.77224 1.93527 1.54447 1.79242 1.68513 0.92013 0.94481 0.92528 0.81464 0.81702 0.80055 0.79933 0.82679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.45 13.96 21.45 0.30 -60.15 15 2 C 0.01 0.60 5.47 84.65 0.46 1.06 15 3 Si 0.95 44.03 27.47 68.60 1.88 45.92 15 4 H -0.25 -10.94 7.11 99.48 0.71 -10.23 15 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 15 6 H -0.24 -10.60 6.54 99.48 0.65 -9.95 15 7 C -0.54 -32.54 9.65 25.60 0.25 -32.30 15 8 H 0.03 2.27 7.98 -2.91 -0.02 2.25 15 9 C 0.06 2.98 4.63 29.10 0.13 3.11 15 10 C -0.58 -24.96 5.89 24.68 0.15 -24.82 15 11 C -0.05 -1.69 10.08 23.52 0.24 -1.45 15 12 C -0.07 -1.87 6.04 -19.92 -0.12 -1.99 15 13 C -0.09 -1.60 10.07 22.74 0.23 -1.37 15 14 C -0.07 -0.91 9.96 22.12 0.22 -0.69 15 15 C -0.11 -1.53 10.11 22.41 0.23 -1.30 15 16 C -0.02 -0.34 10.01 22.00 0.22 -0.12 15 17 C -0.64 -19.64 6.53 22.35 0.15 -19.49 15 18 S 2.53 104.20 6.00 -56.49 -0.34 103.86 15 19 O -0.97 -47.64 18.01 -128.20 -2.31 -49.95 15 20 O -0.96 -41.64 18.01 -128.20 -2.31 -43.95 15 21 H 0.27 15.98 8.31 -92.71 -0.77 15.21 15 22 H 0.04 1.81 7.20 -2.39 -0.02 1.79 15 23 H 0.06 2.52 7.57 -2.39 -0.02 2.50 15 24 H 0.17 4.77 8.06 -2.91 -0.02 4.75 15 25 H 0.17 2.01 8.06 -2.91 -0.02 1.99 15 26 H 0.18 0.69 8.06 -2.91 -0.02 0.67 15 27 H 0.18 0.96 8.06 -2.91 -0.02 0.93 15 28 H 0.16 2.71 8.06 -2.91 -0.02 2.69 15 Total: -1.00 -83.51 263.98 0.49 -83.01 By element: Atomic # 1 Polarization: -0.52 SS G_CDS: 1.12 Total: 0.60 kcal Atomic # 6 Polarization: -81.50 SS G_CDS: 2.15 Total: -79.35 kcal Atomic # 7 Polarization: -60.45 SS G_CDS: 0.30 Total: -60.15 kcal Atomic # 8 Polarization: -89.27 SS G_CDS: -4.62 Total: -93.89 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.88 Total: 45.92 kcal Atomic # 16 Polarization: 104.20 SS G_CDS: -0.34 Total: 103.86 kcal Total: -83.51 0.49 -83.01 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260434231.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.272 kcal (2) G-P(sol) polarization free energy of solvation -83.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds