Wall clock time and date at job start Mon Mar 30 2020 06:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.33387 * 125.20397 * 2 1 4 4 C 1.38427 * 114.91900 * 179.75166 * 3 2 1 5 5 C 1.33385 * 114.91865 * 0.42609 * 4 3 2 6 6 C 1.50706 * 125.20094 * 179.86236 * 5 4 3 7 7 H 1.09002 * 109.47019 * 359.71524 * 6 5 4 8 8 C 1.50701 * 109.47161 * 239.71697 * 6 5 4 9 9 H 1.07997 * 119.99716 * 354.17975 * 8 6 5 10 10 C 1.37871 * 120.00147 * 174.17368 * 8 6 5 11 11 N 1.31522 * 120.00014 * 334.36852 * 10 8 6 12 12 Si 1.86796 * 120.00167 * 154.36695 * 10 8 6 13 13 H 1.48503 * 109.47113 * 179.97438 * 12 10 8 14 14 H 1.48497 * 109.47039 * 60.00087 * 12 10 8 15 15 H 1.48497 * 109.47087 * 299.99851 * 12 10 8 16 16 C 1.52998 * 109.47013 * 119.71571 * 6 5 4 17 17 F 1.39898 * 109.46890 * 185.81921 * 16 6 5 18 18 F 1.39900 * 109.47391 * 305.82368 * 16 6 5 19 19 F 1.39902 * 109.46919 * 65.82364 * 16 6 5 20 20 S 1.75879 * 109.59662 * 359.59612 * 5 4 3 21 21 H 1.08990 * 109.47144 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.46721 * 300.00610 * 1 2 3 23 23 H 1.08999 * 109.47115 * 60.00073 * 1 2 3 24 24 H 1.08001 * 122.53980 * 359.96952 * 3 2 1 25 25 H 1.07997 * 122.53599 * 180.26989 * 4 3 2 26 26 H 0.97001 * 119.99524 * 354.22083 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8428 0.0054 5 6 3.9751 -0.4478 0.0009 6 6 5.3861 -0.9772 0.0022 7 1 6.0873 -0.1427 0.0024 8 6 5.6078 -1.8193 -1.2277 9 1 4.7828 -2.0351 -1.8903 10 6 6.8640 -2.3142 -1.5071 11 7 7.9311 -1.6944 -1.0523 12 14 7.0503 -3.8651 -2.5315 13 1 8.4921 -4.1849 -2.6877 14 1 6.4436 -3.6502 -3.8697 15 1 6.3635 -4.9927 -1.8518 16 6 5.6092 -1.8311 1.2520 17 9 6.9532 -2.2129 1.3221 18 9 5.2753 -1.0887 2.3898 19 9 4.8030 -2.9726 1.1869 20 16 2.5209 -1.4372 0.0007 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8670 2.0895 -0.0005 25 1 4.3721 1.6349 0.0104 26 1 7.8396 -0.8451 -0.5926 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260531742.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:45 Heat of formation + Delta-G solvation = -150.359278 kcal Electronic energy + Delta-G solvation = -16695.125161 eV Core-core repulsion = 13449.406364 eV Total energy + Delta-G solvation = -3245.718797 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.033 amu Computer time = 2.21 seconds Orbital eigenvalues (eV) -50.82254 -48.34975 -48.27351 -38.99799 -36.26532 -33.53503 -31.14622 -26.90615 -26.44489 -24.04624 -23.21964 -20.11114 -19.72494 -19.07376 -18.83660 -18.36123 -16.84786 -16.13395 -15.63274 -15.38662 -15.28691 -14.95286 -14.78116 -14.65439 -14.51564 -14.46984 -14.04478 -13.76593 -13.50633 -13.00385 -12.82993 -12.67605 -12.36971 -12.20043 -11.95017 -11.50803 -11.38185 -10.48958 -9.36200 -9.31269 -8.81618 -6.53621 0.10641 0.74396 1.20041 1.50996 1.56660 1.78513 1.83665 2.16954 2.47330 2.85986 3.35560 3.49332 3.57473 4.03071 4.18122 4.46316 4.56356 4.69693 4.80915 4.83353 5.13191 5.25389 5.41835 5.57023 5.72942 6.05251 6.36422 7.16430 8.49684 Molecular weight = 250.03amu Principal moments of inertia in cm(-1) A = 0.027121 B = 0.009555 C = 0.008483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.161677 B = 2929.643599 C = 3299.903951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.190 4.190 3 C -0.145 4.145 4 C -0.145 4.145 5 C -0.172 4.172 6 C 0.067 3.933 7 H 0.059 0.941 8 C -0.628 4.628 9 H 0.062 0.938 10 C 0.005 3.995 11 N -0.876 5.876 12 Si 1.093 2.907 13 H -0.279 1.279 14 H -0.263 1.263 15 H -0.274 1.274 16 C 0.430 3.570 17 F -0.191 7.191 18 F -0.204 7.204 19 F -0.189 7.189 20 S 0.088 5.912 21 H 0.069 0.931 22 H 0.092 0.908 23 H 0.091 0.909 24 H 0.167 0.833 25 H 0.141 0.859 26 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.525 3.131 1.960 12.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.308 4.308 3 C -0.175 4.175 4 C -0.175 4.175 5 C -0.289 4.289 6 C 0.046 3.954 7 H 0.076 0.924 8 C -0.664 4.664 9 H 0.081 0.919 10 C -0.202 4.202 11 N -0.506 5.506 12 Si 0.914 3.086 13 H -0.204 1.204 14 H -0.187 1.187 15 H -0.200 1.200 16 C 0.375 3.625 17 F -0.172 7.172 18 F -0.186 7.186 19 F -0.170 7.170 20 S 0.352 5.648 21 H 0.088 0.912 22 H 0.111 0.889 23 H 0.110 0.890 24 H 0.184 0.816 25 H 0.159 0.841 26 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.677 0.520 1.426 10.785 hybrid contribution -0.148 2.442 0.976 2.633 sum -10.825 2.961 2.402 11.477 Atomic orbital electron populations 1.20405 0.85128 1.03511 1.04266 1.25086 1.01489 0.95060 1.09118 1.20166 0.91545 1.00523 1.05248 1.20317 0.97724 0.95070 1.04428 1.24168 0.97578 0.97335 1.09822 1.18394 0.90935 0.94836 0.91255 0.92366 1.21700 0.98199 1.36952 1.09504 0.91940 1.27138 0.91490 1.03684 0.97877 1.70879 1.31819 1.14886 1.33046 0.83284 0.76653 0.72886 0.75812 1.20367 1.18740 1.19969 1.22459 0.73094 0.80456 0.86506 1.93129 1.35208 1.92185 1.96726 1.93054 1.92493 1.76963 1.56056 1.93032 1.73688 1.53699 1.96595 1.84337 0.96331 1.10627 1.73463 0.91228 0.88925 0.89005 0.81551 0.84130 0.92462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.48 10.38 71.24 0.74 -0.74 15 2 C -0.19 -5.65 6.51 24.59 0.16 -5.49 15 3 C -0.15 -4.36 10.05 21.22 0.21 -4.15 15 4 C -0.15 -5.37 10.01 21.22 0.21 -5.15 15 5 C -0.17 -7.42 4.64 24.59 0.11 -7.30 15 6 C 0.07 3.34 2.07 -12.28 -0.03 3.32 15 7 H 0.06 3.01 6.98 -2.39 -0.02 2.99 15 8 C -0.63 -33.67 7.86 25.60 0.20 -33.47 15 9 H 0.06 3.39 7.87 -2.91 -0.02 3.37 15 10 C 0.01 0.29 4.58 84.65 0.39 0.68 15 11 N -0.88 -49.98 12.26 21.45 0.26 -49.72 15 12 Si 1.09 48.35 29.98 68.60 2.06 50.41 15 13 H -0.28 -12.23 7.11 99.48 0.71 -11.52 15 14 H -0.26 -10.69 7.11 99.48 0.71 -9.98 15 15 H -0.27 -11.78 7.11 99.48 0.71 -11.08 15 16 C 0.43 21.26 2.68 71.98 0.19 21.45 15 17 F -0.19 -10.16 14.85 44.97 0.67 -9.49 15 18 F -0.20 -9.37 16.87 44.97 0.76 -8.61 15 19 F -0.19 -9.28 15.61 44.97 0.70 -8.57 15 20 S 0.09 3.37 22.01 -56.49 -1.24 2.12 15 21 H 0.07 1.32 8.14 -2.39 -0.02 1.30 15 22 H 0.09 1.48 8.14 -2.39 -0.02 1.46 15 23 H 0.09 1.49 8.14 -2.39 -0.02 1.47 15 24 H 0.17 3.74 8.06 -2.91 -0.02 3.72 15 25 H 0.14 4.81 8.06 -2.91 -0.02 4.78 15 26 H 0.27 15.22 6.99 -92.71 -0.65 14.58 15 Total: -1.00 -60.37 254.05 6.73 -53.64 By element: Atomic # 1 Polarization: -0.24 SS G_CDS: 1.33 Total: 1.08 kcal Atomic # 6 Polarization: -33.06 SS G_CDS: 2.20 Total: -30.86 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: 0.26 Total: -49.72 kcal Atomic # 9 Polarization: -28.80 SS G_CDS: 2.13 Total: -26.68 kcal Atomic # 14 Polarization: 48.35 SS G_CDS: 2.06 Total: 50.41 kcal Atomic # 16 Polarization: 3.37 SS G_CDS: -1.24 Total: 2.12 kcal Total: -60.37 6.73 -53.64 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260531742.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.720 kcal (2) G-P(sol) polarization free energy of solvation -60.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.22 seconds