Wall clock time and date at job start Mon Mar 30 2020 06:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33390 * 122.53638 * 2 1 4 4 S 1.75882 * 109.58952 * 179.97438 * 3 2 1 5 5 C 1.75882 * 90.97263 * 0.02562 * 4 3 2 6 6 C 1.50707 * 125.20418 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.47120 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.46844 * 60.02349 * 6 5 4 9 9 H 1.08008 * 119.99589 * 272.32098 * 8 6 5 10 10 C 1.37873 * 120.00413 * 92.32685 * 8 6 5 11 11 N 1.31512 * 120.00592 * 188.22722 * 10 8 6 12 12 Si 1.86808 * 119.99575 * 8.22992 * 10 8 6 13 13 H 1.48504 * 109.46791 * 274.92149 * 12 10 8 14 14 H 1.48496 * 109.46905 * 154.92677 * 12 10 8 15 15 H 1.48494 * 109.47310 * 34.92281 * 12 10 8 16 16 C 1.53004 * 109.46967 * 300.02417 * 6 5 4 17 17 F 1.39893 * 109.46858 * 185.21937 * 16 6 5 18 18 F 1.39897 * 109.46853 * 305.21346 * 16 6 5 19 19 F 1.39893 * 109.47065 * 65.21246 * 16 6 5 20 20 C 1.33391 * 109.59352 * 0.22628 * 5 4 3 21 21 H 1.08994 * 109.47400 * 89.97302 * 1 2 3 22 22 H 1.09006 * 109.47163 * 209.97180 * 1 2 3 23 23 H 1.09005 * 109.47235 * 329.96892 * 1 2 3 24 24 H 1.07994 * 125.20651 * 359.97438 * 3 2 1 25 25 H 0.96994 * 120.00754 * 180.02562 * 11 10 8 26 26 H 1.07995 * 122.53672 * 179.75356 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2244 1.1245 0.0000 4 16 3.9385 0.7305 0.0007 5 6 3.5736 -0.9901 0.0002 6 6 4.5980 -2.0955 0.0000 7 1 4.0912 -3.0605 -0.0008 8 6 5.4600 -1.9817 1.2308 9 1 6.3431 -1.3600 1.2159 10 6 5.1216 -2.6712 2.3757 11 7 5.7758 -2.4492 3.4948 12 14 3.7337 -3.9210 2.3374 13 1 2.4371 -3.2272 2.5446 14 1 3.9380 -4.9208 3.4162 15 1 3.7226 -4.6082 1.0211 16 6 5.4741 -1.9785 -1.2490 17 9 6.3459 -3.0708 -1.3108 18 9 4.6624 -1.9647 -2.3883 19 9 6.2148 -0.7933 -1.1897 20 6 2.2515 -1.1669 -0.0054 21 1 -0.3634 0.0005 -1.0276 22 1 -0.3634 -0.8903 0.5134 23 1 -0.3634 0.8897 0.5143 24 1 1.8154 2.1240 -0.0004 25 1 5.5379 -2.9346 4.3002 26 1 1.7965 -2.1464 -0.0107 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260904805.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:54 Heat of formation + Delta-G solvation = -149.303784 kcal Electronic energy + Delta-G solvation = -16658.124061 eV Core-core repulsion = 13412.451033 eV Total energy + Delta-G solvation = -3245.673027 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.033 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.92565 -48.41918 -48.39747 -39.23528 -36.01728 -33.69884 -30.40549 -28.12619 -26.88470 -24.31702 -22.17334 -20.36313 -19.61661 -19.14552 -18.50550 -18.46464 -17.50077 -16.18099 -15.89742 -15.34568 -15.16548 -14.88361 -14.74173 -14.72596 -14.57559 -14.52340 -14.21645 -13.77023 -13.45903 -13.13815 -12.95728 -12.74534 -12.49748 -12.16626 -11.88276 -11.76825 -11.36966 -10.91071 -9.45757 -9.11718 -8.45915 -6.58191 0.17658 0.86389 1.29273 1.32195 1.33474 1.39393 1.80864 2.07099 2.22828 2.82181 3.14266 3.37380 3.39673 4.11134 4.23717 4.38410 4.56924 4.59079 4.81414 4.92621 5.06881 5.17422 5.30539 5.59008 5.74580 5.98580 6.48372 7.07694 8.68374 Molecular weight = 250.03amu Principal moments of inertia in cm(-1) A = 0.017603 B = 0.013185 C = 0.009811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.271569 B = 2123.142368 C = 2853.320079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.108 4.108 3 C -0.230 4.230 4 S 0.084 5.916 5 C -0.166 4.166 6 C 0.038 3.962 7 H 0.098 0.902 8 C -0.526 4.526 9 H 0.051 0.949 10 C 0.043 3.957 11 N -0.918 5.918 12 Si 0.919 3.081 13 H -0.251 1.251 14 H -0.277 1.277 15 H -0.240 1.240 16 C 0.454 3.546 17 F -0.187 7.187 18 F -0.189 7.189 19 F -0.188 7.188 20 C -0.157 4.157 21 H 0.083 0.917 22 H 0.068 0.932 23 H 0.079 0.921 24 H 0.188 0.812 25 H 0.275 0.725 26 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.082 2.727 -7.685 12.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.121 4.121 3 C -0.366 4.366 4 S 0.349 5.651 5 C -0.284 4.284 6 C 0.017 3.983 7 H 0.115 0.885 8 C -0.563 4.563 9 H 0.069 0.931 10 C -0.160 4.160 11 N -0.554 5.554 12 Si 0.742 3.258 13 H -0.175 1.175 14 H -0.202 1.202 15 H -0.164 1.164 16 C 0.400 3.600 17 F -0.168 7.168 18 F -0.170 7.170 19 F -0.169 7.169 20 C -0.187 4.187 21 H 0.101 0.899 22 H 0.087 0.913 23 H 0.098 0.902 24 H 0.206 0.794 25 H 0.085 0.915 26 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -8.668 3.565 -7.508 12.009 hybrid contribution -0.929 -1.331 0.272 1.645 sum -9.597 2.235 -7.237 12.226 Atomic orbital electron populations 1.20539 0.87362 1.03415 1.03213 1.19159 0.98960 0.91094 1.02863 1.25762 0.95028 1.03325 1.12438 1.84386 1.07436 1.00354 1.72907 1.24735 0.98012 0.97714 1.07920 1.18933 0.92104 0.96333 0.90956 0.88467 1.20552 1.10308 1.30634 0.94841 0.93066 1.25715 0.98405 0.97676 0.94173 1.69980 1.42668 1.41764 1.00990 0.86100 0.80366 0.79752 0.79632 1.17536 1.20213 1.16372 1.20982 0.80090 0.73055 0.85863 1.93095 1.71751 1.55215 1.96773 1.93110 1.72853 1.96270 1.54806 1.93083 1.78779 1.48459 1.96595 1.20196 0.91757 1.00587 1.06188 0.89872 0.91295 0.90218 0.79434 0.91545 0.83969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.84 10.14 71.24 0.72 -1.12 15 2 C -0.11 -3.33 5.80 -20.92 -0.12 -3.45 15 3 C -0.23 -7.09 10.98 66.72 0.73 -6.35 15 4 S 0.08 3.26 22.00 -56.49 -1.24 2.02 15 5 C -0.17 -6.94 4.70 24.59 0.12 -6.83 15 6 C 0.04 1.75 1.81 -12.28 -0.02 1.73 15 7 H 0.10 4.24 5.03 -2.39 -0.01 4.23 15 8 C -0.53 -28.56 8.39 25.60 0.21 -28.34 15 9 H 0.05 3.13 7.66 -2.91 -0.02 3.11 15 10 C 0.04 2.34 5.47 84.65 0.46 2.80 15 11 N -0.92 -53.95 13.96 21.45 0.30 -53.65 15 12 Si 0.92 40.17 27.33 68.60 1.87 42.04 15 13 H -0.25 -10.43 7.11 99.48 0.71 -9.72 15 14 H -0.28 -11.90 7.11 99.48 0.71 -11.20 15 15 H -0.24 -9.59 6.38 99.48 0.63 -8.96 15 16 C 0.45 19.79 2.69 71.98 0.19 19.98 15 17 F -0.19 -8.22 17.15 44.97 0.77 -7.45 15 18 F -0.19 -7.44 16.89 44.97 0.76 -6.68 15 19 F -0.19 -8.43 15.32 44.97 0.69 -7.75 15 20 C -0.16 -5.70 9.81 21.22 0.21 -5.50 15 21 H 0.08 1.50 8.14 -2.39 -0.02 1.48 15 22 H 0.07 1.40 8.13 -2.38 -0.02 1.38 15 23 H 0.08 1.42 8.12 -2.38 -0.02 1.40 15 24 H 0.19 4.37 8.06 -2.91 -0.02 4.35 15 25 H 0.28 15.01 8.31 -92.71 -0.77 14.24 15 26 H 0.14 4.67 8.06 -2.91 -0.02 4.65 15 Total: -1.00 -60.37 254.53 6.80 -53.57 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: 1.14 Total: 4.97 kcal Atomic # 6 Polarization: -29.58 SS G_CDS: 2.51 Total: -27.07 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: 0.30 Total: -53.65 kcal Atomic # 9 Polarization: -24.10 SS G_CDS: 2.22 Total: -21.88 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 1.87 Total: 42.04 kcal Atomic # 16 Polarization: 3.26 SS G_CDS: -1.24 Total: 2.02 kcal Total: -60.37 6.80 -53.57 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260904805.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.732 kcal (2) G-P(sol) polarization free energy of solvation -60.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds