Wall clock time and date at job start Mon Mar 30 2020 06:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00022 * 2 1 4 4 H 1.48499 * 109.47045 * 239.99939 * 3 2 1 5 5 H 1.48501 * 109.46953 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46899 * 120.00465 * 3 2 1 7 7 C 1.37879 * 119.99846 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99796 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00121 * 0.02562 * 7 2 1 10 10 C 1.50699 * 109.46990 * 180.02562 * 9 7 2 11 11 S 1.75296 * 124.31076 * 270.12631 * 10 9 7 12 12 C 1.75887 * 92.22987 * 180.22656 * 11 10 9 13 13 C 1.39630 * 109.75421 * 359.81684 * 12 11 10 14 14 C 1.41257 * 118.87590 * 180.02562 * 13 12 11 15 15 C 1.36085 * 120.56001 * 359.97438 * 14 13 12 16 16 C 1.38816 * 120.63667 * 0.02562 * 15 14 13 17 17 C 1.37946 * 120.11997 * 359.97438 * 16 15 14 18 18 O 1.35949 * 119.95883 * 179.97438 * 17 16 15 19 19 C 1.32055 * 124.31644 * 89.99894 * 10 9 7 20 20 O 1.36227 * 122.59372 * 359.97366 * 19 10 9 21 21 H 0.97004 * 119.99976 * 359.97438 * 1 2 3 22 22 H 1.08995 * 109.47165 * 59.99921 * 9 7 2 23 23 H 1.09000 * 109.46961 * 299.99363 * 9 7 2 24 24 H 1.08002 * 119.71749 * 180.02562 * 14 13 12 25 25 H 1.08007 * 119.68517 * 180.02562 * 15 14 13 26 26 H 1.07993 * 119.94171 * 179.97438 * 16 15 14 27 27 H 0.96691 * 114.00270 * 270.02586 * 18 17 16 28 28 H 0.96700 * 114.00228 * 269.71687 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2303 -3.6446 -0.0015 11 16 2.8759 -4.3929 -1.4492 12 6 3.8368 -5.5319 -0.5148 13 6 3.6414 -5.3065 0.8492 14 6 4.3265 -6.1188 1.7799 15 6 5.1624 -7.1047 1.3542 16 6 5.3578 -7.3301 -0.0016 17 6 4.7025 -6.5529 -0.9340 18 8 4.8966 -6.7761 -2.2609 19 6 2.7132 -4.2109 1.0894 20 8 2.3655 -3.8050 2.3424 21 1 -0.4850 0.8401 0.0004 22 1 0.6247 -2.5563 -0.8919 23 1 0.6241 -2.5575 0.8881 24 1 4.1851 -5.9566 2.8382 25 1 5.6788 -7.7177 2.0781 26 1 6.0241 -8.1152 -0.3269 27 1 5.6268 -6.2699 -2.6422 28 1 2.9393 -3.1171 2.7065 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260940891.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:24 Heat of formation + Delta-G solvation = -51.065543 kcal Electronic energy + Delta-G solvation = -15332.926186 eV Core-core repulsion = 12633.369829 eV Total energy + Delta-G solvation = -2699.556357 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.78485 -37.96744 -36.23759 -33.86983 -32.81258 -30.41808 -29.53681 -26.86451 -23.73531 -22.95632 -21.57921 -19.91165 -18.48788 -17.08956 -16.69540 -16.20179 -15.56849 -15.50102 -14.83575 -14.48780 -14.38988 -13.85407 -12.78229 -12.49693 -12.40289 -12.12026 -11.72618 -11.31202 -11.17072 -10.88613 -10.66332 -10.58287 -10.36497 -9.97069 -9.77879 -9.56789 -9.02285 -8.51906 -7.99354 -7.16595 -6.14236 -4.20325 1.01013 1.29955 1.93011 2.46308 2.65884 3.25422 3.30508 3.32804 3.72640 4.19760 4.34688 4.73106 4.97669 5.11860 5.20961 5.32412 5.57760 5.71779 5.94343 6.17963 6.27000 6.45890 6.61738 6.73594 6.88168 7.37605 7.50058 7.62452 7.78744 8.13342 8.21838 8.82567 9.43947 10.95343 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.032458 B = 0.006339 C = 0.005873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.441552 B = 4416.208222 C = 4766.439942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.519 4.519 8 H 0.057 0.943 9 C 0.078 3.922 10 C -0.115 4.115 11 S 0.121 5.879 12 C -0.181 4.181 13 C -0.060 4.060 14 C -0.088 4.088 15 C -0.111 4.111 16 C -0.145 4.145 17 C 0.141 3.859 18 O -0.495 6.495 19 C 0.048 3.952 20 O -0.471 6.471 21 H 0.265 0.735 22 H 0.034 0.966 23 H 0.051 0.949 24 H 0.126 0.874 25 H 0.127 0.873 26 H 0.130 0.870 27 H 0.388 0.612 28 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.637 -10.831 0.540 15.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.140 4.140 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.557 4.557 8 H 0.076 0.924 9 C 0.040 3.960 10 C -0.231 4.231 11 S 0.385 5.615 12 C -0.297 4.297 13 C -0.069 4.069 14 C -0.107 4.107 15 C -0.132 4.132 16 C -0.166 4.166 17 C 0.091 3.909 18 O -0.305 6.305 19 C -0.006 4.006 20 O -0.279 6.279 21 H 0.075 0.925 22 H 0.052 0.948 23 H 0.069 0.931 24 H 0.144 0.856 25 H 0.145 0.855 26 H 0.148 0.852 27 H 0.244 0.756 28 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 9.265 -11.185 -0.995 14.558 hybrid contribution 1.393 1.360 1.479 2.445 sum 10.658 -9.825 0.484 14.504 Atomic orbital electron populations 1.69939 1.06067 1.27235 1.49515 1.24991 0.94905 0.99281 0.94835 0.86545 0.79513 0.82562 0.78771 1.20065 1.21102 1.20092 1.20927 0.92916 0.89466 1.52420 0.92438 1.18005 0.91409 0.87340 0.99294 1.25118 1.03028 1.00937 0.94041 1.84205 1.42157 1.27532 1.07580 1.23002 1.06327 1.02639 0.97715 1.19384 0.97921 0.97601 0.92035 1.20671 0.96160 0.94848 0.99068 1.20466 0.99264 0.98329 0.95127 1.21119 1.01458 1.01178 0.92840 1.17619 0.96084 0.93784 0.83368 1.84827 1.56724 1.69019 1.19921 1.17642 1.00478 0.96873 0.85623 1.84860 1.56649 1.59359 1.27048 0.92530 0.94792 0.93147 0.85573 0.85520 0.85204 0.75600 0.76373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.76 13.29 55.43 0.74 -25.03 15 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 15 3 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 15 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 15 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 15 7 C -0.52 -14.08 9.09 -34.44 -0.31 -14.40 15 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 15 9 C 0.08 2.01 5.24 -29.04 -0.15 1.86 15 10 C -0.11 -2.54 5.58 -36.23 -0.20 -2.75 15 11 S 0.12 2.33 23.18 -107.50 -2.49 -0.16 15 12 C -0.18 -3.21 6.43 -38.30 -0.25 -3.45 15 13 C -0.06 -1.08 6.05 -105.30 -0.64 -1.72 15 14 C -0.09 -1.29 10.03 -39.21 -0.39 -1.69 15 15 C -0.11 -1.37 9.94 -40.14 -0.40 -1.77 15 16 C -0.14 -1.84 9.97 -39.47 -0.39 -2.24 15 17 C 0.14 2.11 6.73 -38.93 -0.26 1.84 15 18 O -0.49 -6.52 13.49 -19.58 -0.26 -6.79 15 19 C 0.05 0.98 6.88 -38.58 -0.27 0.72 15 20 O -0.47 -9.18 13.10 -20.47 -0.27 -9.45 15 21 H 0.26 7.25 8.31 -40.82 -0.34 6.91 15 22 H 0.03 0.92 8.14 -51.93 -0.42 0.50 15 23 H 0.05 1.39 7.87 -51.93 -0.41 0.98 15 24 H 0.13 1.64 8.06 -52.49 -0.42 1.21 15 25 H 0.13 1.15 8.06 -52.48 -0.42 0.73 15 26 H 0.13 1.29 8.06 -52.49 -0.42 0.87 15 27 H 0.39 3.28 9.06 45.56 0.41 3.69 15 28 H 0.38 6.05 9.07 45.56 0.41 6.46 15 LS Contribution 269.67 15.07 4.06 4.06 Total: -1.00 -31.51 269.67 -7.42 -38.93 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -0.81 Total: 4.50 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: -3.36 Total: -21.96 kcal Atomic # 7 Polarization: -25.76 SS G_CDS: 0.74 Total: -25.03 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -0.53 Total: -16.24 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 2.33 SS G_CDS: -2.49 Total: -0.16 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -31.51 -7.42 -38.93 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260940891.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.140 kcal (2) G-P(sol) polarization free energy of solvation -31.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds