Wall clock time and date at job start Mon Mar 30 2020 06:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00022 * 2 1 4 4 H 1.48499 * 109.47045 * 239.99939 * 3 2 1 5 5 H 1.48501 * 109.46953 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46899 * 120.00465 * 3 2 1 7 7 C 1.37879 * 119.99846 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99796 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00121 * 0.02562 * 7 2 1 10 10 C 1.50699 * 109.46990 * 180.02562 * 9 7 2 11 11 S 1.75296 * 124.31076 * 270.12631 * 10 9 7 12 12 C 1.75887 * 92.22987 * 180.22656 * 11 10 9 13 13 C 1.39630 * 109.75421 * 359.81684 * 12 11 10 14 14 C 1.41257 * 118.87590 * 180.02562 * 13 12 11 15 15 C 1.36085 * 120.56001 * 359.97438 * 14 13 12 16 16 C 1.38816 * 120.63667 * 0.02562 * 15 14 13 17 17 C 1.37946 * 120.11997 * 359.97438 * 16 15 14 18 18 O 1.35949 * 119.95883 * 179.97438 * 17 16 15 19 19 C 1.32055 * 124.31644 * 89.99894 * 10 9 7 20 20 O 1.36227 * 122.59372 * 359.97366 * 19 10 9 21 21 H 0.97004 * 119.99976 * 359.97438 * 1 2 3 22 22 H 1.08995 * 109.47165 * 59.99921 * 9 7 2 23 23 H 1.09000 * 109.46961 * 299.99363 * 9 7 2 24 24 H 1.08002 * 119.71749 * 180.02562 * 14 13 12 25 25 H 1.08007 * 119.68517 * 180.02562 * 15 14 13 26 26 H 1.07993 * 119.94171 * 179.97438 * 16 15 14 27 27 H 0.96691 * 114.00270 * 270.02586 * 18 17 16 28 28 H 0.96700 * 114.00228 * 269.71687 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2303 -3.6446 -0.0015 11 16 2.8759 -4.3929 -1.4492 12 6 3.8368 -5.5319 -0.5148 13 6 3.6414 -5.3065 0.8492 14 6 4.3265 -6.1188 1.7799 15 6 5.1624 -7.1047 1.3542 16 6 5.3578 -7.3301 -0.0016 17 6 4.7025 -6.5529 -0.9340 18 8 4.8966 -6.7761 -2.2609 19 6 2.7132 -4.2109 1.0894 20 8 2.3655 -3.8050 2.3424 21 1 -0.4850 0.8401 0.0004 22 1 0.6247 -2.5563 -0.8919 23 1 0.6241 -2.5575 0.8881 24 1 4.1851 -5.9566 2.8382 25 1 5.6788 -7.7177 2.0781 26 1 6.0241 -8.1152 -0.3269 27 1 5.6268 -6.2699 -2.6422 28 1 2.9393 -3.1171 2.7065 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260940891.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:23 Heat of formation + Delta-G solvation = -74.432500 kcal Electronic energy + Delta-G solvation = -15333.939454 eV Core-core repulsion = 12633.369829 eV Total energy + Delta-G solvation = -2700.569625 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.01302 -39.32294 -37.41563 -35.71532 -34.45701 -32.10805 -30.66166 -28.57567 -25.52129 -24.24152 -22.91104 -21.43580 -19.69143 -18.65890 -18.38189 -17.75952 -16.91835 -16.79118 -16.44646 -15.90782 -15.64860 -15.25254 -14.50513 -13.96238 -13.92200 -13.68992 -13.17435 -12.86744 -12.73707 -12.52400 -12.37285 -12.08009 -11.84161 -11.58735 -11.39531 -11.36404 -10.64308 -10.28307 -9.41880 -8.56682 -8.24048 -6.40015 -0.27629 0.16495 0.51082 1.01637 1.20201 1.39846 1.42181 1.50758 2.37742 2.60030 3.06389 3.09934 3.41132 3.78749 4.02946 4.14515 4.44758 4.52296 4.68296 4.85700 5.02521 5.16822 5.25548 5.28978 5.41584 5.56808 5.65463 5.81447 6.04073 6.69610 6.74515 6.78857 7.29061 8.84907 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.032458 B = 0.006339 C = 0.005873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.441552 B = 4416.208222 C = 4766.439942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.970 3.030 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.530 4.530 8 H 0.059 0.941 9 C 0.093 3.907 10 C -0.167 4.167 11 S 0.110 5.890 12 C -0.189 4.189 13 C -0.088 4.088 14 C -0.093 4.093 15 C -0.094 4.094 16 C -0.124 4.124 17 C 0.131 3.869 18 O -0.501 6.501 19 C 0.062 3.938 20 O -0.484 6.484 21 H 0.267 0.733 22 H 0.004 0.996 23 H 0.016 0.984 24 H 0.142 0.858 25 H 0.173 0.827 26 H 0.169 0.831 27 H 0.409 0.591 28 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.826 -12.529 1.189 18.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.191 4.191 3 Si 0.794 3.206 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.568 4.568 8 H 0.077 0.923 9 C 0.055 3.945 10 C -0.283 4.283 11 S 0.373 5.627 12 C -0.305 4.305 13 C -0.097 4.097 14 C -0.113 4.113 15 C -0.114 4.114 16 C -0.145 4.145 17 C 0.082 3.918 18 O -0.314 6.314 19 C 0.007 3.993 20 O -0.294 6.294 21 H 0.076 0.924 22 H 0.022 0.978 23 H 0.034 0.966 24 H 0.160 0.840 25 H 0.190 0.810 26 H 0.186 0.814 27 H 0.268 0.732 28 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 12.479 -12.879 -0.345 17.936 hybrid contribution 0.517 1.675 1.321 2.195 sum 12.995 -11.204 0.976 17.186 Atomic orbital electron populations 1.70079 1.07848 1.28285 1.50558 1.25948 0.95745 1.03211 0.94187 0.85422 0.78227 0.77634 0.79326 1.19240 1.20664 1.18807 1.21217 0.93059 0.90465 1.52065 0.92298 1.17544 0.91608 0.89165 0.96217 1.24717 1.05085 1.02093 0.96428 1.83930 1.43290 1.28703 1.06757 1.23231 1.06916 1.03145 0.97232 1.19417 0.99044 0.98119 0.93114 1.20974 0.96070 0.94837 0.99373 1.20998 0.97426 0.97005 0.95978 1.21628 1.00044 1.00356 0.92474 1.17840 0.95949 0.93397 0.84622 1.84784 1.58056 1.69310 1.19263 1.17995 0.99454 0.96734 0.85092 1.84774 1.57685 1.60060 1.26909 0.92373 0.97799 0.96551 0.83998 0.80998 0.81351 0.73200 0.74601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.93 13.29 21.45 0.28 -55.64 15 2 C 0.01 0.45 5.46 84.66 0.46 0.91 15 3 Si 0.97 43.49 29.54 68.60 2.03 45.52 15 4 H -0.27 -11.58 7.11 99.48 0.71 -10.88 15 5 H -0.28 -12.33 7.11 99.48 0.71 -11.62 15 6 H -0.26 -11.22 7.11 99.48 0.71 -10.51 15 7 C -0.53 -30.00 9.09 25.60 0.23 -29.77 15 8 H 0.06 3.23 7.74 -2.91 -0.02 3.21 15 9 C 0.09 5.16 5.24 29.10 0.15 5.31 15 10 C -0.17 -7.82 5.58 24.74 0.14 -7.68 15 11 S 0.11 4.36 23.18 -56.49 -1.31 3.06 15 12 C -0.19 -6.53 6.43 23.10 0.15 -6.38 15 13 C -0.09 -3.10 6.05 -20.31 -0.12 -3.23 15 14 C -0.09 -2.43 10.03 22.51 0.23 -2.21 15 15 C -0.09 -1.81 9.94 21.91 0.22 -1.59 15 16 C -0.12 -2.49 9.97 22.34 0.22 -2.27 15 17 C 0.13 3.54 6.73 22.69 0.15 3.69 15 18 O -0.50 -11.77 13.49 -92.98 -1.25 -13.03 15 19 C 0.06 2.62 6.88 23.22 0.16 2.78 15 20 O -0.48 -19.34 13.10 -96.15 -1.26 -20.60 15 21 H 0.27 15.10 8.31 -92.71 -0.77 14.33 15 22 H 0.00 0.22 8.14 -2.39 -0.02 0.20 15 23 H 0.02 0.98 7.87 -2.39 -0.02 0.96 15 24 H 0.14 3.21 8.06 -2.91 -0.02 3.19 15 25 H 0.17 1.85 8.06 -2.91 -0.02 1.83 15 26 H 0.17 2.17 8.06 -2.91 -0.02 2.15 15 27 H 0.41 5.71 9.06 -74.06 -0.67 5.03 15 28 H 0.40 12.87 9.07 -74.06 -0.67 12.20 15 Total: -1.00 -71.40 269.67 0.35 -71.04 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -0.12 Total: 10.09 kcal Atomic # 6 Polarization: -42.42 SS G_CDS: 1.99 Total: -40.43 kcal Atomic # 7 Polarization: -55.93 SS G_CDS: 0.28 Total: -55.64 kcal Atomic # 8 Polarization: -31.12 SS G_CDS: -2.51 Total: -33.63 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: 4.36 SS G_CDS: -1.31 Total: 3.06 kcal Total: -71.40 0.35 -71.04 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260940891.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.388 kcal (2) G-P(sol) polarization free energy of solvation -71.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds