Wall clock time and date at job start Mon Mar 30 2020 06:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30523 * 1 3 3 Si 1.86796 * 120.00060 * 2 1 4 4 H 1.48504 * 109.47031 * 274.98746 * 3 2 1 5 5 H 1.48501 * 109.47215 * 34.98357 * 3 2 1 6 6 H 1.48499 * 109.47362 * 154.98695 * 3 2 1 7 7 C 1.40423 * 119.99569 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99703 * 186.14147 * 7 2 1 9 9 C 1.40483 * 120.00523 * 6.15024 * 7 2 1 10 10 N 1.34197 * 121.35237 * 353.57856 * 9 7 2 11 11 C 1.31716 * 121.16550 * 179.97438 * 10 9 7 12 12 Cl 1.73598 * 118.05082 * 180.02562 * 11 10 9 13 13 N 1.31622 * 123.90117 * 0.02562 * 11 10 9 14 14 C 1.33645 * 121.33262 * 0.02562 * 13 11 10 15 15 C 1.40509 * 122.05128 * 180.02562 * 14 13 11 16 16 C 1.36152 * 119.72602 * 179.97438 * 15 14 13 17 17 C 1.39807 * 121.00044 * 0.02562 * 16 15 14 18 18 O 1.35755 * 119.70421 * 180.02562 * 17 16 15 19 19 C 1.38425 * 120.59887 * 359.97438 * 17 16 15 20 20 C 1.39038 * 119.33332 * 359.97438 * 19 17 16 21 21 H 0.97006 * 120.00133 * 0.02562 * 1 2 3 22 22 H 1.07997 * 120.13440 * 0.02562 * 15 14 13 23 23 H 1.08005 * 119.50009 * 180.02562 * 16 15 14 24 24 H 0.96699 * 114.00812 * 89.99905 * 18 17 16 25 25 H 1.07996 * 120.33438 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2392 1.6177 0.0000 4 1 2.3813 2.1072 -1.3948 5 1 1.4933 2.6200 0.8027 6 1 3.5855 1.4120 0.5920 7 6 2.0073 -1.2161 0.0005 8 1 3.0827 -1.2188 0.1006 9 6 1.3109 -2.4293 -0.1293 10 7 -0.0305 -2.4681 -0.1276 11 6 -0.6796 -3.6076 -0.2500 12 17 -2.4150 -3.5639 -0.2383 13 7 -0.0909 -4.7776 -0.3808 14 6 1.2410 -4.8873 -0.3977 15 6 1.8852 -6.1282 -0.5370 16 6 3.2455 -6.1851 -0.5487 17 6 4.0158 -5.0252 -0.4234 18 8 5.3705 -5.1124 -0.4389 19 6 3.4098 -3.7884 -0.2847 20 6 2.0218 -3.7077 -0.2713 21 1 -0.4850 0.8401 -0.0004 22 1 1.3037 -7.0330 -0.6352 23 1 3.7369 -7.1409 -0.6564 24 1 5.7593 -5.0403 -1.3214 25 1 4.0090 -2.8951 -0.1886 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261354332.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:46 Heat of formation + Delta-G solvation = -1.904210 kcal Electronic energy + Delta-G solvation = -15296.149880 eV Core-core repulsion = 12493.141268 eV Total energy + Delta-G solvation = -2803.008612 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.025 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.65704 -37.73900 -35.78195 -35.10214 -34.26140 -32.13175 -30.16869 -28.50305 -26.78182 -23.19110 -22.63711 -21.08953 -18.80883 -17.71983 -17.49763 -15.75157 -15.48540 -15.01843 -14.20755 -14.14284 -13.72545 -13.28069 -13.19019 -12.39212 -11.91391 -11.75457 -11.47702 -11.42481 -11.32278 -10.67125 -10.48346 -10.31147 -9.97446 -9.86960 -9.41762 -9.24264 -8.18892 -7.75594 -7.35736 -6.94425 -5.25927 1.44686 1.89312 2.66660 2.76628 2.78965 2.84693 3.08003 3.51183 3.84189 4.40000 4.84669 5.42043 5.45583 5.54279 5.70361 5.87323 6.16724 6.29349 6.49013 6.64941 6.71533 6.87863 7.11793 7.16305 7.44718 7.51231 7.88610 8.16322 8.23976 8.68316 9.58113 9.76558 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.015304 B = 0.010920 C = 0.006394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.192452 B = 2563.516334 C = 4378.042495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.659 5.659 2 C 0.051 3.949 3 Si 0.924 3.076 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.253 1.253 7 C -0.344 4.344 8 H 0.105 0.895 9 C 0.275 3.725 10 N -0.546 5.546 11 C 0.412 3.588 12 Cl -0.043 7.043 13 N -0.635 5.635 14 C 0.206 3.794 15 C -0.136 4.136 16 C -0.104 4.104 17 C 0.016 3.984 18 O -0.500 6.500 19 C -0.066 4.066 20 C -0.200 4.200 21 H 0.290 0.710 22 H 0.123 0.877 23 H 0.117 0.883 24 H 0.372 0.628 25 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.346 -0.488 -1.825 4.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.276 5.276 2 C -0.182 4.182 3 Si 0.745 3.255 4 H -0.187 1.187 5 H -0.192 1.192 6 H -0.177 1.177 7 C -0.376 4.376 8 H 0.123 0.877 9 C 0.147 3.853 10 N -0.273 5.273 11 C 0.115 3.885 12 Cl -0.015 7.015 13 N -0.366 5.366 14 C 0.081 3.919 15 C -0.157 4.157 16 C -0.124 4.124 17 C -0.030 4.030 18 O -0.308 6.308 19 C -0.086 4.086 20 C -0.208 4.208 21 H 0.101 0.899 22 H 0.141 0.859 23 H 0.135 0.865 24 H 0.225 0.775 25 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.913 -0.420 -1.189 3.174 hybrid contribution 0.993 0.651 -0.533 1.301 sum 3.905 0.231 -1.722 4.274 Atomic orbital electron populations 1.70005 1.07772 1.30021 1.19851 1.26430 0.95284 1.02220 0.94232 0.86004 0.80591 0.79001 0.79871 1.18658 1.19249 1.17674 1.19979 0.95795 0.89011 1.32804 0.87716 1.19736 0.86908 0.90207 0.88467 1.68781 1.07755 1.24357 1.26430 1.22458 0.87124 0.86811 0.92132 1.98299 1.08137 1.98555 1.96542 1.67675 1.09608 1.26720 1.32596 1.18490 0.88398 0.92260 0.92766 1.20282 0.93176 0.96116 1.06078 1.20850 0.93665 0.97559 1.00354 1.18245 0.82155 0.92300 1.10260 1.84828 1.17310 1.95595 1.33090 1.21112 0.93602 0.96568 0.97282 1.20345 0.94080 0.96328 1.10050 0.89851 0.85867 0.86468 0.77528 0.85674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.66 -15.44 11.58 55.57 0.64 -14.80 15 2 C 0.05 1.12 5.49 -17.29 -0.09 1.02 15 3 Si 0.92 15.67 29.57 -169.99 -5.03 10.65 15 4 H -0.26 -4.42 7.11 56.52 0.40 -4.01 15 5 H -0.27 -4.48 7.11 56.52 0.40 -4.08 15 6 H -0.25 -4.19 7.11 56.52 0.40 -3.79 15 7 C -0.34 -7.99 8.88 -37.91 -0.34 -8.32 15 8 H 0.10 2.17 6.39 -52.48 -0.34 1.83 15 9 C 0.28 7.03 6.75 -82.46 -0.56 6.48 15 10 N -0.55 -14.63 8.05 -8.28 -0.07 -14.69 15 11 C 0.41 10.60 8.12 -92.37 -0.75 9.85 15 12 Cl -0.04 -0.94 29.22 -51.86 -1.52 -2.46 15 13 N -0.64 -16.13 10.32 -9.72 -0.10 -16.23 15 14 C 0.21 4.96 6.64 -84.77 -0.56 4.40 15 15 C -0.14 -2.75 10.01 -39.48 -0.40 -3.15 15 16 C -0.10 -1.88 9.88 -39.74 -0.39 -2.27 15 17 C 0.02 0.30 6.71 -38.93 -0.26 0.04 15 18 O -0.50 -8.00 13.48 -18.97 -0.26 -8.25 15 19 C -0.07 -1.36 9.45 -39.22 -0.37 -1.73 15 20 C -0.20 -4.79 5.91 -104.62 -0.62 -5.41 15 21 H 0.29 5.99 8.29 -40.82 -0.34 5.65 15 22 H 0.12 2.27 8.06 -52.49 -0.42 1.85 15 23 H 0.12 1.76 8.06 -52.48 -0.42 1.33 15 24 H 0.37 4.06 9.06 45.56 0.41 4.47 15 25 H 0.13 2.38 6.59 -52.49 -0.35 2.04 15 LS Contribution 247.82 15.07 3.73 3.73 Total: -1.00 -28.68 247.82 -7.17 -35.85 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -0.25 Total: 5.30 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: -4.34 Total: 0.90 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: 0.48 Total: -45.72 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: -0.26 Total: -8.25 kcal Atomic # 14 Polarization: 15.67 SS G_CDS: -5.03 Total: 10.65 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -1.52 Total: -2.46 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -28.68 -7.17 -35.85 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261354332.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.947 kcal (2) G-P(sol) polarization free energy of solvation -28.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds