Wall clock time and date at job start Mon Mar 30 2020 06:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38213 * 119.45305 * 2 1 4 4 C 1.39541 * 121.46277 * 179.97438 * 3 2 1 5 5 S 1.76052 * 130.51457 * 179.97438 * 4 3 2 6 6 C 1.75490 * 91.62083 * 179.47917 * 5 4 3 7 7 C 1.33537 * 110.63741 * 0.45324 * 6 5 4 8 8 S 1.76203 * 122.21484 * 179.49884 * 7 6 5 9 9 C 1.39803 * 120.03374 * 359.77349 * 4 3 2 10 10 C 1.47760 * 118.09644 * 0.49388 * 9 4 3 11 11 C 1.40580 * 120.40368 * 179.74157 * 10 9 4 12 12 H 1.08004 * 119.99849 * 327.17188 * 11 10 9 13 13 C 1.39823 * 119.99798 * 147.45308 * 11 10 9 14 14 N 1.30929 * 119.99873 * 164.24966 * 13 11 10 15 15 Si 1.86803 * 120.00004 * 344.24760 * 13 11 10 16 16 H 1.48501 * 109.46876 * 94.47800 * 15 13 11 17 17 H 1.48502 * 109.46941 * 214.47354 * 15 13 11 18 18 H 1.48494 * 109.47006 * 334.47772 * 15 13 11 19 19 C 1.37539 * 119.44924 * 179.97438 * 2 1 3 20 20 H 1.09001 * 109.47272 * 270.01962 * 1 2 3 21 21 H 1.09004 * 109.46871 * 30.02167 * 1 2 3 22 22 H 1.08998 * 109.47567 * 150.01457 * 1 2 3 23 23 H 1.07998 * 119.26843 * 359.97438 * 3 2 1 24 24 H 1.07997 * 124.68084 * 179.97438 * 6 5 4 25 25 H 1.34505 * 102.99947 * 270.02446 * 8 7 6 26 26 H 0.97003 * 120.00201 * 180.02562 * 14 13 11 27 27 H 1.07994 * 119.94512 * 0.02562 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1866 1.2035 0.0000 4 6 3.5812 1.2524 0.0005 5 16 4.6773 2.6301 0.0001 6 6 6.0808 1.5769 0.0173 7 6 5.7073 0.2949 0.0127 8 16 6.8758 -1.0240 0.0140 9 6 4.3229 0.0674 0.0059 10 6 3.5873 -1.2140 -0.0004 11 6 4.2846 -2.4347 -0.0009 12 1 5.2369 -2.5124 -0.5045 13 6 3.7425 -3.5497 0.6455 14 7 4.2153 -4.7450 0.3962 15 14 2.3438 -3.3341 1.8648 16 1 1.0466 -3.5350 1.1705 17 1 2.4806 -4.3316 2.9564 18 1 2.3924 -1.9646 2.4366 19 6 2.1832 -1.1977 0.0005 20 1 -0.3634 0.0004 1.0277 21 1 -0.3633 0.8898 -0.5142 22 1 -0.3634 -0.8901 -0.5136 23 1 1.6259 2.1265 -0.0004 24 1 7.1054 1.9185 0.0224 25 1 7.0820 -1.2469 -1.2964 26 1 3.8390 -5.5186 0.8443 27 1 1.6334 -2.1272 0.0005 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306590743.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:56 Heat of formation + Delta-G solvation = 34.346618 kcal Electronic energy + Delta-G solvation = -13708.479074 eV Core-core repulsion = 11455.379337 eV Total energy + Delta-G solvation = -2253.099737 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.36237 -34.87299 -33.99654 -30.91568 -29.87072 -25.93443 -25.15641 -22.79344 -20.91455 -19.53122 -17.82427 -17.00050 -16.06092 -15.05426 -14.84498 -14.77360 -13.52178 -13.37861 -13.12585 -12.95737 -12.42821 -12.11262 -11.75215 -11.51031 -11.37611 -11.22778 -10.81210 -10.56503 -10.23643 -10.00593 -9.79023 -9.59746 -9.24397 -8.44397 -7.43018 -7.36084 -7.04975 -6.67878 -4.55838 1.44724 2.00557 2.44666 2.48632 2.74380 3.02526 3.08849 3.24663 3.26210 3.77085 3.87079 4.29367 5.15771 5.62407 5.73401 5.82770 6.11805 6.12894 6.21669 6.33789 6.55670 6.63546 6.68533 6.95502 7.09618 7.37736 7.51348 7.72612 7.81739 8.18381 8.46002 8.56598 9.80787 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.018900 B = 0.012542 C = 0.007984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.117004 B = 2231.947563 C = 3506.258000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.008 4.008 3 C -0.235 4.235 4 C -0.060 4.060 5 S 0.036 5.964 6 C -0.225 4.225 7 C -0.038 4.038 8 S -0.101 6.101 9 C -0.167 4.167 10 C 0.126 3.874 11 C -0.391 4.391 12 H 0.120 0.880 13 C 0.083 3.917 14 N -0.780 5.780 15 Si 0.911 3.089 16 H -0.267 1.267 17 H -0.288 1.288 18 H -0.240 1.240 19 C -0.261 4.261 20 H 0.062 0.938 21 H 0.058 0.942 22 H 0.059 0.941 23 H 0.097 0.903 24 H 0.159 0.841 25 H 0.064 0.936 26 H 0.291 0.709 27 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.418 5.801 0.415 5.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.011 4.011 3 C -0.261 4.261 4 C -0.176 4.176 5 S 0.298 5.702 6 C -0.361 4.361 7 C -0.163 4.163 8 S 0.055 5.945 9 C -0.175 4.175 10 C 0.120 3.880 11 C -0.417 4.417 12 H 0.137 0.863 13 C -0.140 4.140 14 N -0.402 5.402 15 Si 0.736 3.264 16 H -0.193 1.193 17 H -0.215 1.215 18 H -0.162 1.162 19 C -0.282 4.282 20 H 0.080 0.920 21 H 0.077 0.923 22 H 0.078 0.922 23 H 0.115 0.885 24 H 0.176 0.824 25 H 0.028 0.972 26 H 0.102 0.898 27 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.799 6.396 0.640 6.477 hybrid contribution -0.907 -0.896 -0.518 1.376 sum -1.705 5.500 0.123 5.760 Atomic orbital electron populations 1.20793 0.93044 1.01665 1.01359 1.19172 0.94044 0.92848 0.94999 1.19285 0.90062 0.96245 1.20517 1.22203 0.97178 0.94142 1.04104 1.83530 0.97112 1.09915 1.79643 1.25213 1.01195 0.94889 1.14852 1.19785 0.95115 0.94248 1.07104 1.85628 1.52680 1.45817 1.10423 1.18928 0.90305 0.93263 1.14967 1.18445 0.90817 0.90362 0.88363 1.20107 1.06405 0.90675 1.24553 0.86290 1.26334 0.96773 0.94017 0.96845 1.69692 1.36911 0.99606 1.33971 0.86274 0.79989 0.80454 0.79635 1.19286 1.21510 1.16238 1.20595 0.93670 0.96035 1.17935 0.91973 0.92330 0.92192 0.88502 0.82384 0.97174 0.89824 0.87559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.86 9.98 36.01 0.36 -1.50 15 2 C -0.01 -0.16 5.85 -104.88 -0.61 -0.77 15 3 C -0.24 -5.01 9.64 -39.10 -0.38 -5.39 15 4 C -0.06 -1.32 6.48 -38.51 -0.25 -1.57 15 5 S 0.04 0.68 23.29 -107.50 -2.50 -1.83 15 6 C -0.22 -4.29 10.92 29.09 0.32 -3.97 15 7 C -0.04 -0.84 6.05 -40.45 -0.24 -1.08 15 8 S -0.10 -2.08 22.31 -107.50 -2.40 -4.48 15 9 C -0.17 -4.00 6.03 -104.65 -0.63 -4.63 15 10 C 0.13 3.15 5.25 -104.30 -0.55 2.60 15 11 C -0.39 -9.97 8.44 -38.11 -0.32 -10.29 15 12 H 0.12 3.11 5.48 -43.60 -0.24 2.87 15 13 C 0.08 2.05 5.42 -17.34 -0.09 1.95 15 14 N -0.78 -19.32 13.93 55.54 0.77 -18.54 15 15 Si 0.91 19.86 24.52 -169.99 -4.17 15.70 15 16 H -0.27 -5.57 6.72 56.52 0.38 -5.19 15 17 H -0.29 -6.05 7.11 56.52 0.40 -5.64 15 18 H -0.24 -5.49 6.83 56.52 0.39 -5.10 15 19 C -0.26 -6.10 6.70 -39.02 -0.26 -6.36 15 20 H 0.06 0.95 8.14 -51.93 -0.42 0.53 15 21 H 0.06 0.85 8.07 -51.93 -0.42 0.43 15 22 H 0.06 0.94 8.07 -51.93 -0.42 0.52 15 23 H 0.10 1.84 8.06 -52.49 -0.42 1.41 15 24 H 0.16 2.55 8.06 -52.49 -0.42 2.12 15 25 H 0.06 1.26 9.07 97.61 0.89 2.14 15 26 H 0.29 6.49 8.30 -40.82 -0.34 6.15 15 27 H 0.11 2.43 4.84 -52.49 -0.25 2.18 15 LS Contribution 253.55 15.07 3.82 3.82 Total: -1.00 -25.90 253.55 -8.02 -33.92 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -0.89 Total: 2.43 kcal Atomic # 6 Polarization: -28.35 SS G_CDS: -2.66 Total: -31.02 kcal Atomic # 7 Polarization: -19.32 SS G_CDS: 0.77 Total: -18.54 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -4.17 Total: 15.70 kcal Atomic # 16 Polarization: -1.41 SS G_CDS: -4.90 Total: -6.31 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -25.90 -8.02 -33.92 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306590743.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.269 kcal (2) G-P(sol) polarization free energy of solvation -25.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds