Wall clock time and date at job start Mon Mar 30 2020 06:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38213 * 119.45305 * 2 1 4 4 C 1.39541 * 121.46277 * 179.97438 * 3 2 1 5 5 S 1.76052 * 130.51457 * 179.97438 * 4 3 2 6 6 C 1.75490 * 91.62083 * 179.47917 * 5 4 3 7 7 C 1.33537 * 110.63741 * 0.45324 * 6 5 4 8 8 S 1.76203 * 122.21484 * 179.49884 * 7 6 5 9 9 C 1.39803 * 120.03374 * 359.77349 * 4 3 2 10 10 C 1.47760 * 118.09644 * 0.49388 * 9 4 3 11 11 C 1.40580 * 120.40368 * 179.74157 * 10 9 4 12 12 H 1.08004 * 119.99849 * 327.17188 * 11 10 9 13 13 C 1.39823 * 119.99798 * 147.45308 * 11 10 9 14 14 N 1.30929 * 119.99873 * 164.24966 * 13 11 10 15 15 Si 1.86803 * 120.00004 * 344.24760 * 13 11 10 16 16 H 1.48501 * 109.46876 * 94.47800 * 15 13 11 17 17 H 1.48502 * 109.46941 * 214.47354 * 15 13 11 18 18 H 1.48494 * 109.47006 * 334.47772 * 15 13 11 19 19 C 1.37539 * 119.44924 * 179.97438 * 2 1 3 20 20 H 1.09001 * 109.47272 * 270.01962 * 1 2 3 21 21 H 1.09004 * 109.46871 * 30.02167 * 1 2 3 22 22 H 1.08998 * 109.47567 * 150.01457 * 1 2 3 23 23 H 1.07998 * 119.26843 * 359.97438 * 3 2 1 24 24 H 1.07997 * 124.68084 * 179.97438 * 6 5 4 25 25 H 1.34505 * 102.99947 * 270.02446 * 8 7 6 26 26 H 0.97003 * 120.00201 * 180.02562 * 14 13 11 27 27 H 1.07994 * 119.94512 * 0.02562 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1866 1.2035 0.0000 4 6 3.5812 1.2524 0.0005 5 16 4.6773 2.6301 0.0001 6 6 6.0808 1.5769 0.0173 7 6 5.7073 0.2949 0.0127 8 16 6.8758 -1.0240 0.0140 9 6 4.3229 0.0674 0.0059 10 6 3.5873 -1.2140 -0.0004 11 6 4.2846 -2.4347 -0.0009 12 1 5.2369 -2.5124 -0.5045 13 6 3.7425 -3.5497 0.6455 14 7 4.2153 -4.7450 0.3962 15 14 2.3438 -3.3341 1.8648 16 1 1.0466 -3.5350 1.1705 17 1 2.4806 -4.3316 2.9564 18 1 2.3924 -1.9646 2.4366 19 6 2.1832 -1.1977 0.0005 20 1 -0.3634 0.0004 1.0277 21 1 -0.3633 0.8898 -0.5142 22 1 -0.3634 -0.8901 -0.5136 23 1 1.6259 2.1265 -0.0004 24 1 7.1054 1.9185 0.0224 25 1 7.0820 -1.2469 -1.2964 26 1 3.8390 -5.5186 0.8443 27 1 1.6334 -2.1272 0.0005 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306590743.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:55 Heat of formation + Delta-G solvation = 20.776929 kcal Electronic energy + Delta-G solvation = -13709.067500 eV Core-core repulsion = 11455.379337 eV Total energy + Delta-G solvation = -2253.688163 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.04454 -36.50885 -35.73411 -32.63174 -31.45233 -27.52003 -26.85477 -24.42310 -22.61664 -21.19655 -19.55918 -18.65154 -17.68289 -16.77702 -16.52510 -16.42236 -15.16472 -14.97848 -14.72891 -14.57338 -13.90402 -13.77831 -13.37773 -13.09654 -12.97417 -12.82410 -12.48133 -12.18492 -11.88437 -11.67035 -11.53845 -11.22081 -10.94222 -10.13607 -9.09150 -9.07455 -8.68615 -8.33641 -6.38134 -0.17932 0.41155 0.69014 0.85558 1.08143 1.27866 1.38669 1.49624 1.60747 2.11758 2.15824 2.54148 3.37696 4.08449 4.20287 4.40388 4.53990 4.63175 4.81951 4.88402 5.00840 5.01554 5.11939 5.26888 5.43132 5.65373 5.78644 6.01424 6.12489 6.36860 6.69219 6.75389 8.08832 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.018900 B = 0.012542 C = 0.007984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.117004 B = 2231.947563 C = 3506.258000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.016 4.016 3 C -0.230 4.230 4 C -0.097 4.097 5 S 0.111 5.889 6 C -0.198 4.198 7 C -0.078 4.078 8 S -0.104 6.104 9 C -0.189 4.189 10 C 0.108 3.892 11 C -0.429 4.429 12 H 0.100 0.900 13 C 0.056 3.944 14 N -0.820 5.820 15 Si 0.955 3.045 16 H -0.253 1.253 17 H -0.278 1.278 18 H -0.259 1.259 19 C -0.281 4.281 20 H 0.077 0.923 21 H 0.083 0.917 22 H 0.065 0.935 23 H 0.125 0.875 24 H 0.193 0.807 25 H 0.065 0.935 26 H 0.298 0.702 27 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.408 8.516 0.715 8.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.019 4.019 3 C -0.255 4.255 4 C -0.214 4.214 5 S 0.373 5.627 6 C -0.335 4.335 7 C -0.202 4.202 8 S 0.052 5.948 9 C -0.197 4.197 10 C 0.103 3.897 11 C -0.457 4.457 12 H 0.118 0.882 13 C -0.163 4.163 14 N -0.444 5.444 15 Si 0.779 3.221 16 H -0.178 1.178 17 H -0.204 1.204 18 H -0.183 1.183 19 C -0.302 4.302 20 H 0.096 0.904 21 H 0.102 0.898 22 H 0.084 0.916 23 H 0.143 0.857 24 H 0.210 0.790 25 H 0.029 0.971 26 H 0.109 0.891 27 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.802 9.119 0.932 9.341 hybrid contribution -0.533 -1.368 -0.663 1.611 sum -2.335 7.750 0.269 8.099 Atomic orbital electron populations 1.20858 0.89670 1.03278 1.02827 1.19687 0.96673 0.92054 0.93520 1.19744 0.90094 0.97396 1.18254 1.22684 0.98376 0.95659 1.04672 1.83261 0.94614 1.06812 1.77963 1.25817 1.03487 0.94264 1.09950 1.19952 0.94733 0.95514 1.10023 1.85546 1.51788 1.46780 1.10682 1.19305 0.91664 0.93713 1.14986 1.18725 0.91825 0.90762 0.88414 1.20025 1.06532 0.91887 1.27211 0.88239 1.26795 0.98192 0.93689 0.97615 1.69703 1.38763 1.00132 1.35781 0.85614 0.78854 0.79229 0.78420 1.17823 1.20430 1.18317 1.20741 0.93327 0.97092 1.19078 0.90404 0.89823 0.91574 0.85716 0.79009 0.97065 0.89112 0.87779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.29 9.98 71.24 0.71 -2.58 15 2 C -0.02 -0.66 5.85 -20.03 -0.12 -0.78 15 3 C -0.23 -9.14 9.64 22.58 0.22 -8.92 15 4 C -0.10 -4.11 6.48 22.96 0.15 -3.96 15 5 S 0.11 3.70 23.29 -56.49 -1.32 2.38 15 6 C -0.20 -6.96 10.92 66.75 0.73 -6.23 15 7 C -0.08 -3.33 6.05 21.71 0.13 -3.20 15 8 S -0.10 -4.32 22.31 -56.49 -1.26 -5.58 15 9 C -0.19 -8.98 6.03 -19.88 -0.12 -9.10 15 10 C 0.11 5.51 5.25 -19.66 -0.10 5.40 15 11 C -0.43 -22.83 8.44 23.23 0.20 -22.63 15 12 H 0.10 5.52 5.48 -8.56 -0.05 5.47 15 13 C 0.06 2.84 5.42 85.21 0.46 3.30 15 14 N -0.82 -42.32 13.93 21.81 0.30 -42.02 15 15 Si 0.95 41.57 24.52 68.60 1.68 43.25 15 16 H -0.25 -10.27 6.72 99.48 0.67 -9.60 15 17 H -0.28 -11.39 7.11 99.48 0.71 -10.68 15 18 H -0.26 -11.93 6.83 99.48 0.68 -11.25 15 19 C -0.28 -13.11 6.70 22.64 0.15 -12.96 15 20 H 0.08 2.12 8.14 -2.39 -0.02 2.10 15 21 H 0.08 2.08 8.07 -2.38 -0.02 2.06 15 22 H 0.07 1.90 8.07 -2.39 -0.02 1.88 15 23 H 0.12 4.18 8.06 -2.91 -0.02 4.16 15 24 H 0.19 5.35 8.06 -2.91 -0.02 5.32 15 25 H 0.07 2.62 9.07 73.35 0.67 3.29 15 26 H 0.30 13.80 8.30 -92.71 -0.77 13.03 15 27 H 0.10 4.78 4.84 -2.91 -0.01 4.77 15 Total: -1.00 -56.68 253.55 3.60 -53.08 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: 1.79 Total: 10.54 kcal Atomic # 6 Polarization: -64.06 SS G_CDS: 2.41 Total: -61.65 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: 0.30 Total: -42.02 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 1.68 Total: 43.25 kcal Atomic # 16 Polarization: -0.62 SS G_CDS: -2.58 Total: -3.20 kcal Total: -56.68 3.60 -53.08 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306590743.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.853 kcal (2) G-P(sol) polarization free energy of solvation -56.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds