Wall clock time and date at job start Mon Mar 30 2020 06:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37879 * 120.06200 * 2 1 4 4 C 1.37827 * 120.74818 * 179.71763 * 3 2 1 5 5 C 1.41235 * 120.91803 * 0.57023 * 4 3 2 6 6 C 1.45814 * 129.12890 * 179.72294 * 5 4 3 7 7 S 1.76203 * 122.65891 * 0.02562 * 6 5 4 8 8 C 1.32483 * 114.69196 * 179.97438 * 6 5 4 9 9 S 1.75283 * 111.31173 * 359.97438 * 8 6 5 10 10 C 1.39416 * 119.02843 * 359.71399 * 5 4 3 11 11 C 1.40421 * 120.06491 * 180.28003 * 2 1 3 12 12 C 1.40912 * 120.10972 * 359.97438 * 11 2 1 13 13 H 1.08001 * 120.00057 * 318.89397 * 12 11 2 14 14 C 1.39813 * 119.99788 * 138.89805 * 12 11 2 15 15 N 1.30936 * 120.00152 * 339.76248 * 14 12 11 16 16 Si 1.86801 * 119.99694 * 159.76562 * 14 12 11 17 17 H 1.48494 * 109.47469 * 90.00281 * 16 14 12 18 18 H 1.48507 * 109.46940 * 209.99779 * 16 14 12 19 19 H 1.48494 * 109.47447 * 329.99638 * 16 14 12 20 20 H 1.09003 * 109.46579 * 264.40130 * 1 2 3 21 21 H 1.08995 * 109.47376 * 24.39750 * 1 2 3 22 22 H 1.09000 * 109.47293 * 144.40434 * 1 2 3 23 23 H 1.08006 * 119.62320 * 359.97438 * 3 2 1 24 24 H 1.07995 * 119.54241 * 180.28317 * 4 3 2 25 25 H 1.34496 * 102.99825 * 90.00161 * 7 6 5 26 26 H 1.07996 * 124.34967 * 179.97438 * 8 6 5 27 27 H 0.96997 * 120.00033 * 175.17103 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1933 0.0000 4 6 3.5758 1.2098 0.0058 5 6 4.3160 0.0070 -0.0001 6 6 5.7616 -0.1839 -0.0010 7 16 6.8985 1.1623 0.0064 8 6 6.1527 -1.4497 -0.0067 9 16 4.7805 -2.5404 -0.0109 10 6 3.6323 -1.2080 -0.0059 11 6 2.2105 -1.2153 -0.0059 12 6 1.5096 -2.4377 -0.0114 13 1 0.6299 -2.5586 0.6033 14 6 1.9532 -3.4942 -0.8125 15 7 2.7430 -3.2577 -1.8297 16 14 1.4190 -5.2432 -0.4316 17 1 0.1612 -5.5465 -1.1602 18 1 2.4801 -6.1895 -0.8609 19 1 1.1914 -5.3844 1.0290 20 1 -0.3632 -0.1003 1.0228 21 1 -0.3634 0.9358 -0.4245 22 1 -0.3634 -0.8356 -0.5982 23 1 1.6525 2.1257 -0.0004 24 1 4.0970 2.1557 0.0104 25 1 7.0936 1.3863 1.3181 26 1 7.1844 -1.7687 -0.0086 27 1 3.1071 -3.9959 -2.3429 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306619250.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:22 Heat of formation + Delta-G solvation = 26.521449 kcal Electronic energy + Delta-G solvation = -13703.387362 eV Core-core repulsion = 11449.948300 eV Total energy + Delta-G solvation = -2253.439062 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.17476 -34.95392 -33.44239 -30.39636 -29.53300 -26.05532 -24.99312 -22.26039 -20.98725 -19.45112 -17.85330 -16.60516 -15.99446 -15.20564 -14.66659 -14.18751 -13.63054 -13.29175 -12.96403 -12.77840 -12.17142 -11.73103 -11.69705 -11.26523 -11.23132 -10.98619 -10.75162 -10.59857 -10.26451 -9.94004 -9.62011 -9.51141 -9.00149 -8.26185 -7.67999 -7.24985 -7.00865 -6.34696 -4.55483 1.57405 2.00199 2.62293 2.70261 2.98246 3.04488 3.07974 3.13190 3.37092 3.65901 3.89464 4.49677 5.24740 5.42803 6.03402 6.20186 6.28887 6.42227 6.51589 6.59778 6.64006 6.86029 6.96646 7.14126 7.31601 7.46719 7.65548 7.85746 8.04195 8.31344 8.63088 8.74675 10.08348 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.023897 B = 0.010168 C = 0.007429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.391188 B = 2753.103196 C = 3768.275714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.179 4.179 3 C -0.082 4.082 4 C -0.190 4.190 5 C -0.040 4.040 6 C -0.114 4.114 7 S -0.124 6.124 8 C -0.177 4.177 9 S 0.145 5.855 10 C -0.164 4.164 11 C 0.158 3.842 12 C -0.475 4.475 13 H 0.085 0.915 14 C 0.075 3.925 15 N -0.777 5.777 16 Si 0.892 3.108 17 H -0.268 1.268 18 H -0.272 1.272 19 H -0.260 1.260 20 H 0.043 0.957 21 H 0.040 0.960 22 H 0.063 0.937 23 H 0.098 0.902 24 H 0.103 0.897 25 H 0.059 0.941 26 H 0.156 0.844 27 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.786 1.130 2.447 3.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.184 4.184 3 C -0.101 4.101 4 C -0.212 4.212 5 C -0.049 4.049 6 C -0.242 4.242 7 S 0.031 5.969 8 C -0.316 4.316 9 S 0.411 5.589 10 C -0.282 4.282 11 C 0.152 3.848 12 C -0.504 4.504 13 H 0.103 0.897 14 C -0.144 4.144 15 N -0.402 5.402 16 Si 0.716 3.284 17 H -0.194 1.194 18 H -0.197 1.197 19 H -0.183 1.183 20 H 0.062 0.938 21 H 0.059 0.941 22 H 0.082 0.918 23 H 0.116 0.884 24 H 0.121 0.879 25 H 0.024 0.976 26 H 0.174 0.826 27 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.370 0.083 1.974 3.906 hybrid contribution -0.464 0.041 0.988 1.092 sum 2.906 0.124 2.962 4.151 Atomic orbital electron populations 1.20366 0.92706 1.00585 1.00100 1.19733 0.94716 0.92214 1.11757 1.20344 0.93416 0.96380 0.99956 1.20257 0.93097 0.94831 1.13003 1.18817 0.89448 0.94046 1.02560 1.20764 0.94557 0.94129 1.14741 1.85438 1.56422 1.44470 1.10575 1.25899 1.04210 0.97532 1.03962 1.83829 0.92404 1.08276 1.74397 1.22596 0.97538 0.93227 1.14834 1.16710 0.87607 0.92708 0.87763 1.19275 1.12223 0.95947 1.22986 0.89681 1.25769 0.94438 1.00962 0.93206 1.69861 1.24284 1.34916 1.11184 0.86532 0.79507 0.82024 0.80383 1.19352 1.19716 1.18339 0.93789 0.94121 0.91767 0.88404 0.87890 0.97621 0.82618 0.90283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.60 9.37 36.00 0.34 -1.26 15 2 C -0.18 -4.18 5.94 -103.93 -0.62 -4.79 15 3 C -0.08 -1.78 9.60 -39.86 -0.38 -2.16 15 4 C -0.19 -4.25 9.86 -38.59 -0.38 -4.63 15 5 C -0.04 -0.95 6.03 -105.29 -0.63 -1.58 15 6 C -0.11 -2.39 6.21 -38.47 -0.24 -2.63 15 7 S -0.12 -2.18 25.71 -107.50 -2.76 -4.95 15 8 C -0.18 -3.50 10.83 28.82 0.31 -3.19 15 9 S 0.14 3.18 20.10 -107.50 -2.16 1.02 15 10 C -0.16 -4.09 5.74 -37.63 -0.22 -4.31 15 11 C 0.16 4.01 5.33 -106.55 -0.57 3.44 15 12 C -0.47 -11.87 7.59 -37.98 -0.29 -12.16 15 13 H 0.09 2.06 7.64 -52.49 -0.40 1.66 15 14 C 0.07 1.80 4.28 -17.34 -0.07 1.72 15 15 N -0.78 -19.31 10.92 55.54 0.61 -18.70 15 16 Si 0.89 18.08 29.61 -169.99 -5.03 13.05 15 17 H -0.27 -5.38 7.11 56.52 0.40 -4.98 15 18 H -0.27 -5.40 7.11 56.52 0.40 -5.00 15 19 H -0.26 -5.25 7.11 56.52 0.40 -4.84 15 20 H 0.04 0.81 8.14 -51.93 -0.42 0.38 15 21 H 0.04 0.70 8.05 -51.93 -0.42 0.29 15 22 H 0.06 1.32 7.28 -51.93 -0.38 0.94 15 23 H 0.10 1.83 8.06 -52.48 -0.42 1.41 15 24 H 0.10 2.09 7.97 -52.49 -0.42 1.68 15 25 H 0.06 0.97 9.07 97.61 0.89 1.86 15 26 H 0.16 2.54 8.06 -52.49 -0.42 2.12 15 27 H 0.29 6.56 8.30 -40.82 -0.34 6.22 15 LS Contribution 261.01 15.07 3.93 3.93 Total: -1.00 -26.17 261.01 -9.30 -35.47 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -1.13 Total: 1.73 kcal Atomic # 6 Polarization: -28.81 SS G_CDS: -2.75 Total: -31.56 kcal Atomic # 7 Polarization: -19.31 SS G_CDS: 0.61 Total: -18.70 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.03 Total: 13.05 kcal Atomic # 16 Polarization: 1.00 SS G_CDS: -4.92 Total: -3.92 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -26.17 -9.30 -35.47 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306619250.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.995 kcal (2) G-P(sol) polarization free energy of solvation -26.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds