Wall clock time and date at job start Mon Mar 30 2020 06:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37879 * 120.06200 * 2 1 4 4 C 1.37827 * 120.74818 * 179.71763 * 3 2 1 5 5 C 1.41235 * 120.91803 * 0.57023 * 4 3 2 6 6 C 1.45814 * 129.12890 * 179.72294 * 5 4 3 7 7 S 1.76203 * 122.65891 * 0.02562 * 6 5 4 8 8 C 1.32483 * 114.69196 * 179.97438 * 6 5 4 9 9 S 1.75283 * 111.31173 * 359.97438 * 8 6 5 10 10 C 1.39416 * 119.02843 * 359.71399 * 5 4 3 11 11 C 1.40421 * 120.06491 * 180.28003 * 2 1 3 12 12 C 1.40912 * 120.10972 * 359.97438 * 11 2 1 13 13 H 1.08001 * 120.00057 * 318.89397 * 12 11 2 14 14 C 1.39813 * 119.99788 * 138.89805 * 12 11 2 15 15 N 1.30936 * 120.00152 * 339.76248 * 14 12 11 16 16 Si 1.86801 * 119.99694 * 159.76562 * 14 12 11 17 17 H 1.48494 * 109.47469 * 90.00281 * 16 14 12 18 18 H 1.48507 * 109.46940 * 209.99779 * 16 14 12 19 19 H 1.48494 * 109.47447 * 329.99638 * 16 14 12 20 20 H 1.09003 * 109.46579 * 264.40130 * 1 2 3 21 21 H 1.08995 * 109.47376 * 24.39750 * 1 2 3 22 22 H 1.09000 * 109.47293 * 144.40434 * 1 2 3 23 23 H 1.08006 * 119.62320 * 359.97438 * 3 2 1 24 24 H 1.07995 * 119.54241 * 180.28317 * 4 3 2 25 25 H 1.34496 * 102.99825 * 90.00161 * 7 6 5 26 26 H 1.07996 * 124.34967 * 179.97438 * 8 6 5 27 27 H 0.96997 * 120.00033 * 175.17103 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1933 0.0000 4 6 3.5758 1.2098 0.0058 5 6 4.3160 0.0070 -0.0001 6 6 5.7616 -0.1839 -0.0010 7 16 6.8985 1.1623 0.0064 8 6 6.1527 -1.4497 -0.0067 9 16 4.7805 -2.5404 -0.0109 10 6 3.6323 -1.2080 -0.0059 11 6 2.2105 -1.2153 -0.0059 12 6 1.5096 -2.4377 -0.0114 13 1 0.6299 -2.5586 0.6033 14 6 1.9532 -3.4942 -0.8125 15 7 2.7430 -3.2577 -1.8297 16 14 1.4190 -5.2432 -0.4316 17 1 0.1612 -5.5465 -1.1602 18 1 2.4801 -6.1895 -0.8609 19 1 1.1914 -5.3844 1.0290 20 1 -0.3632 -0.1003 1.0228 21 1 -0.3634 0.9358 -0.4245 22 1 -0.3634 -0.8356 -0.5982 23 1 1.6525 2.1257 -0.0004 24 1 4.0970 2.1557 0.0104 25 1 7.0936 1.3863 1.3181 26 1 7.1844 -1.7687 -0.0086 27 1 3.1071 -3.9959 -2.3429 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306619250.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:20 Heat of formation + Delta-G solvation = 14.403871 kcal Electronic energy + Delta-G solvation = -13703.912820 eV Core-core repulsion = 11449.948300 eV Total energy + Delta-G solvation = -2253.964520 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 4.78 seconds Orbital eigenvalues (eV) -39.88327 -36.63180 -35.19016 -32.09041 -31.25335 -27.77227 -26.71042 -23.94755 -22.67318 -21.12249 -19.57263 -18.08355 -17.72632 -16.91017 -16.30366 -15.84697 -15.27189 -14.91350 -14.63293 -14.48020 -13.75513 -13.42112 -13.31412 -12.92870 -12.84650 -12.68755 -12.33575 -12.18744 -11.90242 -11.62084 -11.25933 -11.21494 -10.74797 -9.98616 -9.06997 -8.97551 -8.77857 -8.08062 -6.39858 -0.01285 0.45333 0.88128 1.09932 1.34577 1.38798 1.47195 1.50830 1.72115 2.14464 2.22057 2.72819 3.46110 3.87535 4.41327 4.56312 4.70507 4.78030 4.87455 5.00886 5.06301 5.18307 5.22851 5.40379 5.64415 5.72267 5.90456 6.08499 6.30380 6.49969 6.85038 6.93496 8.33138 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.023897 B = 0.010168 C = 0.007429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.391188 B = 2753.103196 C = 3768.275714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.198 4.198 3 C -0.087 4.087 4 C -0.195 4.195 5 C -0.063 4.063 6 C -0.136 4.136 7 S -0.095 6.095 8 C -0.162 4.162 9 S 0.127 5.873 10 C -0.197 4.197 11 C 0.123 3.877 12 C -0.500 4.500 13 H 0.081 0.919 14 C 0.045 3.955 15 N -0.807 5.807 16 Si 0.949 3.051 17 H -0.263 1.263 18 H -0.264 1.264 19 H -0.260 1.260 20 H 0.055 0.945 21 H 0.065 0.935 22 H 0.048 0.952 23 H 0.130 0.870 24 H 0.122 0.878 25 H 0.073 0.927 26 H 0.192 0.808 27 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.480 1.670 2.721 4.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.203 4.203 3 C -0.106 4.106 4 C -0.216 4.216 5 C -0.072 4.072 6 C -0.263 4.263 7 S 0.059 5.941 8 C -0.300 4.300 9 S 0.393 5.607 10 C -0.314 4.314 11 C 0.117 3.883 12 C -0.530 4.530 13 H 0.099 0.901 14 C -0.171 4.171 15 N -0.434 5.434 16 Si 0.771 3.229 17 H -0.188 1.188 18 H -0.188 1.188 19 H -0.184 1.184 20 H 0.074 0.926 21 H 0.084 0.916 22 H 0.067 0.933 23 H 0.148 0.852 24 H 0.140 0.860 25 H 0.037 0.963 26 H 0.209 0.791 27 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.061 0.638 2.249 4.686 hybrid contribution -0.624 0.022 0.925 1.116 sum 3.437 0.660 3.174 4.725 Atomic orbital electron populations 1.20339 0.90755 1.01280 1.00751 1.20238 0.96499 0.92296 1.11223 1.20710 0.93588 0.97237 0.99104 1.20623 0.93623 0.95337 1.12025 1.19285 0.91054 0.94128 1.02691 1.20959 0.94333 0.95957 1.15048 1.85277 1.54532 1.42805 1.11454 1.26234 1.04946 0.96576 1.02220 1.83674 0.93234 1.08781 1.75055 1.22913 0.98030 0.94710 1.15731 1.17148 0.88494 0.93758 0.88859 1.19406 1.12701 0.96979 1.23870 0.90149 1.26358 0.94235 1.03901 0.92592 1.69904 1.25492 1.35992 1.11990 0.85666 0.79387 0.77905 0.79981 1.18800 1.18846 1.18432 0.92617 0.91587 0.93254 0.85188 0.85977 0.96319 0.79051 0.89911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.90 9.37 71.24 0.67 -2.24 15 2 C -0.20 -9.20 5.94 -19.42 -0.12 -9.32 15 3 C -0.09 -3.70 9.60 22.09 0.21 -3.49 15 4 C -0.19 -8.47 9.86 22.91 0.23 -8.25 15 5 C -0.06 -2.92 6.03 -20.30 -0.12 -3.05 15 6 C -0.14 -5.50 6.21 23.10 0.14 -5.36 15 7 S -0.09 -3.10 25.71 -56.49 -1.45 -4.55 15 8 C -0.16 -6.13 10.83 66.69 0.72 -5.41 15 9 S 0.13 5.59 20.10 -56.49 -1.14 4.46 15 10 C -0.20 -9.90 5.74 23.54 0.14 -9.76 15 11 C 0.12 6.36 5.33 -21.11 -0.11 6.25 15 12 C -0.50 -25.58 7.59 23.31 0.18 -25.41 15 13 H 0.08 4.01 7.64 -2.91 -0.02 3.99 15 14 C 0.05 2.20 4.28 85.21 0.36 2.56 15 15 N -0.81 -40.77 10.92 21.81 0.24 -40.53 15 16 Si 0.95 37.30 29.61 68.60 2.03 39.33 15 17 H -0.26 -10.03 7.11 99.48 0.71 -9.32 15 18 H -0.26 -9.92 7.11 99.48 0.71 -9.21 15 19 H -0.26 -10.15 7.11 99.48 0.71 -9.44 15 20 H 0.06 2.00 8.14 -2.39 -0.02 1.98 15 21 H 0.07 2.18 8.05 -2.39 -0.02 2.16 15 22 H 0.05 2.04 7.28 -2.39 -0.02 2.02 15 23 H 0.13 4.53 8.06 -2.91 -0.02 4.51 15 24 H 0.12 4.71 7.97 -2.91 -0.02 4.68 15 25 H 0.07 2.15 9.07 73.35 0.67 2.81 15 26 H 0.19 5.69 8.06 -2.91 -0.02 5.67 15 27 H 0.29 13.48 8.30 -92.71 -0.77 12.71 15 Total: -1.00 -56.04 261.01 3.85 -52.19 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: 1.87 Total: 12.56 kcal Atomic # 6 Polarization: -65.76 SS G_CDS: 2.30 Total: -63.46 kcal Atomic # 7 Polarization: -40.77 SS G_CDS: 0.24 Total: -40.53 kcal Atomic # 14 Polarization: 37.30 SS G_CDS: 2.03 Total: 39.33 kcal Atomic # 16 Polarization: 2.50 SS G_CDS: -2.59 Total: -0.09 kcal Total: -56.04 3.85 -52.19 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306619250.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.598 kcal (2) G-P(sol) polarization free energy of solvation -56.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.78 seconds