Wall clock time and date at job start Mon Mar 30 2020 06:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35683 * 119.58143 * 2 1 4 4 C 1.41107 * 120.09797 * 179.97438 * 3 2 1 5 5 C 1.41232 * 120.07091 * 179.97438 * 4 3 2 6 6 H 1.08002 * 119.99560 * 334.56335 * 5 4 3 7 7 C 1.39784 * 119.99925 * 154.56315 * 5 4 3 8 8 N 1.30933 * 120.00381 * 342.46669 * 7 5 4 9 9 Si 1.86805 * 119.99797 * 162.47319 * 7 5 4 10 10 H 1.48500 * 109.47095 * 60.00012 * 9 7 5 11 11 H 1.48505 * 109.47219 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47324 * 299.99541 * 9 7 5 13 13 C 1.40036 * 119.85749 * 0.02562 * 4 3 2 14 14 C 1.40340 * 120.00146 * 359.93005 * 13 4 3 15 15 C 1.45936 * 129.16094 * 180.02562 * 14 13 4 16 16 S 1.76205 * 122.64869 * 0.05027 * 15 14 13 17 17 C 1.32261 * 114.70604 * 180.02562 * 15 14 13 18 18 S 1.75237 * 111.50096 * 0.02562 * 17 15 14 19 19 C 1.40172 * 119.07087 * 0.07106 * 14 13 4 20 20 H 1.08997 * 109.47283 * 90.00013 * 1 2 3 21 21 H 1.09000 * 109.46868 * 210.00178 * 1 2 3 22 22 H 1.08998 * 109.46917 * 329.99866 * 1 2 3 23 23 H 1.07993 * 119.95597 * 359.71818 * 3 2 1 24 24 H 0.97004 * 120.00555 * 179.97438 * 8 7 5 25 25 H 1.07999 * 119.99601 * 179.97438 * 13 4 3 26 26 H 1.34502 * 102.99914 * 269.95369 * 16 15 14 27 27 H 1.07998 * 124.25146 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1768 1.1800 0.0000 4 6 3.5878 1.1927 0.0005 5 6 4.2845 2.4213 0.0000 6 1 3.8162 3.3073 -0.4025 7 6 5.5800 2.4903 0.5204 8 7 6.0218 1.5401 1.3054 9 14 6.6810 3.9385 0.0960 10 1 6.0420 5.1976 0.5560 11 1 7.9945 3.7759 0.7696 12 1 6.8817 3.9936 -1.3743 13 6 4.2959 -0.0155 0.0005 14 6 3.6022 -1.2354 0.0015 15 6 4.1303 -2.5959 0.0022 16 16 5.8574 -2.9452 0.0032 17 6 3.2102 -3.5460 0.0025 18 16 1.5922 -2.8732 0.0012 19 6 2.2006 -1.2219 0.0009 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3633 0.8900 0.5139 23 1 1.6293 2.1108 -0.0046 24 1 6.9209 1.5878 1.6663 25 1 5.3759 -0.0083 0.0005 26 1 6.1544 -3.0066 -1.3072 27 1 3.4287 -4.6037 0.0026 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306662191.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:56 Heat of formation + Delta-G solvation = 27.166432 kcal Electronic energy + Delta-G solvation = -13465.603498 eV Core-core repulsion = 11212.192404 eV Total energy + Delta-G solvation = -2253.411093 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.23417 -34.88513 -33.81101 -30.93593 -28.81305 -26.01366 -25.45289 -22.49935 -20.68371 -19.95477 -16.98540 -16.69485 -16.63639 -15.25145 -14.70743 -14.30844 -13.65885 -13.42039 -13.18890 -12.35909 -12.23191 -12.10810 -11.72270 -11.49653 -11.23835 -11.05295 -10.95083 -10.49278 -10.28325 -9.97282 -9.71000 -9.57960 -9.11614 -8.29948 -7.57995 -7.47099 -6.82538 -6.78953 -4.42142 1.48402 1.88847 2.53892 2.64741 2.88217 3.03607 3.04799 3.08596 3.20559 3.61754 3.87934 4.47202 5.33841 5.46403 5.81232 5.83169 6.16798 6.19278 6.29059 6.43672 6.58209 6.84268 7.00219 7.12772 7.37685 7.50965 7.69613 7.87389 8.09389 8.47850 8.75872 8.78630 10.11288 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.021871 B = 0.008928 C = 0.006481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.954170 B = 3135.391221 C = 4319.220409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.036 4.036 3 C -0.179 4.179 4 C 0.110 3.890 5 C -0.456 4.456 6 H 0.081 0.919 7 C 0.075 3.925 8 N -0.777 5.777 9 Si 0.909 3.091 10 H -0.265 1.265 11 H -0.277 1.277 12 H -0.264 1.264 13 C -0.141 4.141 14 C -0.036 4.036 15 C -0.092 4.092 16 S -0.109 6.109 17 C -0.150 4.150 18 S 0.035 5.965 19 C -0.234 4.234 20 H 0.059 0.941 21 H 0.053 0.947 22 H 0.060 0.940 23 H 0.104 0.896 24 H 0.285 0.715 25 H 0.133 0.867 26 H 0.061 0.939 27 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.901 -4.698 -2.010 5.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.040 4.040 3 C -0.200 4.200 4 C 0.106 3.894 5 C -0.485 4.485 6 H 0.099 0.901 7 C -0.145 4.145 8 N -0.401 5.401 9 Si 0.733 3.267 10 H -0.190 1.190 11 H -0.202 1.202 12 H -0.188 1.188 13 C -0.163 4.163 14 C -0.043 4.043 15 C -0.219 4.219 16 S 0.046 5.954 17 C -0.287 4.287 18 S 0.295 5.705 19 C -0.350 4.350 20 H 0.077 0.923 21 H 0.072 0.928 22 H 0.079 0.921 23 H 0.122 0.878 24 H 0.096 0.904 25 H 0.150 0.850 26 H 0.026 0.974 27 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -3.223 -5.630 -1.622 6.686 hybrid contribution 1.128 1.342 -1.079 2.059 sum -2.094 -4.287 -2.700 5.483 Atomic orbital electron populations 1.20733 0.93149 1.01463 1.01106 1.18487 0.93680 0.90966 1.00886 1.20656 0.94632 0.95117 1.09628 1.17435 0.90567 0.93193 0.88182 1.19482 0.98362 0.95665 1.35006 0.90138 1.25918 0.98346 0.97515 0.92739 1.69849 1.18019 1.31712 1.20558 0.86354 0.78984 0.81430 0.79948 1.18962 1.20156 1.18818 1.21241 1.00026 0.88492 1.06563 1.18937 0.91374 0.91896 1.02087 1.21012 0.94797 0.94985 1.11137 1.85630 1.05820 1.93490 1.10471 1.25305 0.96221 1.02088 1.05097 1.83295 1.06132 0.99978 1.81113 1.21649 0.95399 0.94128 1.23804 0.92257 0.92832 0.92083 0.87821 0.90370 0.84956 0.97429 0.82244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.86 9.85 36.01 0.35 -1.50 15 2 C -0.04 -0.78 5.87 -104.68 -0.61 -1.40 15 3 C -0.18 -4.21 9.31 -39.41 -0.37 -4.57 15 4 C 0.11 2.84 5.55 -107.00 -0.59 2.25 15 5 C -0.46 -11.60 9.03 -37.87 -0.34 -11.94 15 6 H 0.08 1.94 7.90 -52.49 -0.41 1.53 15 7 C 0.07 1.81 5.12 -17.36 -0.09 1.72 15 8 N -0.78 -19.66 10.99 55.54 0.61 -19.05 15 9 Si 0.91 18.10 29.59 -169.99 -5.03 13.07 15 10 H -0.27 -5.20 7.11 56.52 0.40 -4.79 15 11 H -0.28 -5.40 7.11 56.52 0.40 -4.99 15 12 H -0.26 -5.23 7.11 56.52 0.40 -4.83 15 13 C -0.14 -3.65 8.51 -38.12 -0.32 -3.97 15 14 C -0.04 -0.86 6.02 -105.30 -0.63 -1.49 15 15 C -0.09 -1.93 6.21 -38.43 -0.24 -2.17 15 16 S -0.11 -2.05 25.72 -107.50 -2.76 -4.81 15 17 C -0.15 -2.73 10.81 28.81 0.31 -2.42 15 18 S 0.04 0.65 22.49 -107.50 -2.42 -1.77 15 19 C -0.23 -5.27 6.33 -38.01 -0.24 -5.51 15 20 H 0.06 0.94 8.14 -51.93 -0.42 0.51 15 21 H 0.05 0.87 7.56 -51.93 -0.39 0.48 15 22 H 0.06 0.96 8.07 -51.93 -0.42 0.54 15 23 H 0.10 2.23 8.06 -52.49 -0.42 1.80 15 24 H 0.29 6.60 8.30 -40.82 -0.34 6.26 15 25 H 0.13 3.55 6.10 -52.49 -0.32 3.23 15 26 H 0.06 1.07 9.07 97.61 0.89 1.96 15 27 H 0.16 2.35 8.06 -52.49 -0.42 1.93 15 LS Contribution 263.98 15.07 3.98 3.98 Total: -1.00 -26.51 263.98 -9.47 -35.97 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -1.06 Total: 3.62 kcal Atomic # 6 Polarization: -28.23 SS G_CDS: -2.78 Total: -31.01 kcal Atomic # 7 Polarization: -19.66 SS G_CDS: 0.61 Total: -19.05 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.03 Total: 13.07 kcal Atomic # 16 Polarization: -1.40 SS G_CDS: -5.18 Total: -6.58 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -26.51 -9.47 -35.97 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306662191.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.140 kcal (2) G-P(sol) polarization free energy of solvation -26.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds