Wall clock time and date at job start Mon Mar 30 2020 06:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35683 * 119.58143 * 2 1 4 4 C 1.41107 * 120.09797 * 179.97438 * 3 2 1 5 5 C 1.41232 * 120.07091 * 179.97438 * 4 3 2 6 6 H 1.08002 * 119.99560 * 334.56335 * 5 4 3 7 7 C 1.39784 * 119.99925 * 154.56315 * 5 4 3 8 8 N 1.30933 * 120.00381 * 342.46669 * 7 5 4 9 9 Si 1.86805 * 119.99797 * 162.47319 * 7 5 4 10 10 H 1.48500 * 109.47095 * 60.00012 * 9 7 5 11 11 H 1.48505 * 109.47219 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47324 * 299.99541 * 9 7 5 13 13 C 1.40036 * 119.85749 * 0.02562 * 4 3 2 14 14 C 1.40340 * 120.00146 * 359.93005 * 13 4 3 15 15 C 1.45936 * 129.16094 * 180.02562 * 14 13 4 16 16 S 1.76205 * 122.64869 * 0.05027 * 15 14 13 17 17 C 1.32261 * 114.70604 * 180.02562 * 15 14 13 18 18 S 1.75237 * 111.50096 * 0.02562 * 17 15 14 19 19 C 1.40172 * 119.07087 * 0.07106 * 14 13 4 20 20 H 1.08997 * 109.47283 * 90.00013 * 1 2 3 21 21 H 1.09000 * 109.46868 * 210.00178 * 1 2 3 22 22 H 1.08998 * 109.46917 * 329.99866 * 1 2 3 23 23 H 1.07993 * 119.95597 * 359.71818 * 3 2 1 24 24 H 0.97004 * 120.00555 * 179.97438 * 8 7 5 25 25 H 1.07999 * 119.99601 * 179.97438 * 13 4 3 26 26 H 1.34502 * 102.99914 * 269.95369 * 16 15 14 27 27 H 1.07998 * 124.25146 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1768 1.1800 0.0000 4 6 3.5878 1.1927 0.0005 5 6 4.2845 2.4213 0.0000 6 1 3.8162 3.3073 -0.4025 7 6 5.5800 2.4903 0.5204 8 7 6.0218 1.5401 1.3054 9 14 6.6810 3.9385 0.0960 10 1 6.0420 5.1976 0.5560 11 1 7.9945 3.7759 0.7696 12 1 6.8817 3.9936 -1.3743 13 6 4.2959 -0.0155 0.0005 14 6 3.6022 -1.2354 0.0015 15 6 4.1303 -2.5959 0.0022 16 16 5.8574 -2.9452 0.0032 17 6 3.2102 -3.5460 0.0025 18 16 1.5922 -2.8732 0.0012 19 6 2.2006 -1.2219 0.0009 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3633 0.8900 0.5139 23 1 1.6293 2.1108 -0.0046 24 1 6.9209 1.5878 1.6663 25 1 5.3759 -0.0083 0.0005 26 1 6.1544 -3.0066 -1.3072 27 1 3.4287 -4.6037 0.0026 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306662191.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:55 Heat of formation + Delta-G solvation = 14.387680 kcal Electronic energy + Delta-G solvation = -13466.157626 eV Core-core repulsion = 11212.192404 eV Total energy + Delta-G solvation = -2253.965222 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.95558 -36.56781 -35.52539 -32.66124 -30.51144 -27.65032 -27.21825 -24.13085 -22.42025 -21.61174 -18.77237 -18.30467 -18.20799 -16.94988 -16.33862 -15.98377 -15.30518 -15.02709 -14.72217 -13.98874 -13.81774 -13.69254 -13.36792 -13.02837 -12.82691 -12.69096 -12.57358 -12.08635 -11.91567 -11.70907 -11.36550 -11.28368 -10.86907 -9.95680 -9.22732 -9.05706 -8.62401 -8.43319 -6.31092 -0.07481 0.37216 0.80329 1.03394 1.22878 1.39314 1.46252 1.51811 1.58270 2.09380 2.20995 2.67255 3.62064 3.85692 4.22515 4.41160 4.66221 4.74657 4.83426 4.89773 5.02942 5.06165 5.21689 5.36349 5.59107 5.76397 5.87576 6.05154 6.25253 6.62522 6.89365 6.94984 8.33379 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.021871 B = 0.008928 C = 0.006481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.954170 B = 3135.391221 C = 4319.220409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.038 4.038 3 C -0.199 4.199 4 C 0.081 3.919 5 C -0.491 4.491 6 H 0.082 0.918 7 C 0.035 3.965 8 N -0.813 5.813 9 Si 0.980 3.020 10 H -0.257 1.257 11 H -0.269 1.269 12 H -0.262 1.262 13 C -0.176 4.176 14 C -0.051 4.051 15 C -0.133 4.133 16 S -0.105 6.105 17 C -0.128 4.128 18 S 0.105 5.895 19 C -0.263 4.263 20 H 0.078 0.922 21 H 0.065 0.935 22 H 0.075 0.925 23 H 0.114 0.886 24 H 0.289 0.711 25 H 0.112 0.888 26 H 0.070 0.930 27 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.113 -5.868 -2.301 7.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.042 4.042 3 C -0.220 4.220 4 C 0.078 3.922 5 C -0.520 4.520 6 H 0.100 0.900 7 C -0.181 4.181 8 N -0.438 5.438 9 Si 0.801 3.199 10 H -0.181 1.181 11 H -0.193 1.193 12 H -0.187 1.187 13 C -0.198 4.198 14 C -0.059 4.059 15 C -0.260 4.260 16 S 0.049 5.951 17 C -0.265 4.265 18 S 0.365 5.635 19 C -0.378 4.378 20 H 0.096 0.904 21 H 0.084 0.916 22 H 0.094 0.906 23 H 0.132 0.868 24 H 0.100 0.900 25 H 0.130 0.870 26 H 0.034 0.966 27 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -4.462 -6.806 -1.912 8.360 hybrid contribution 1.358 1.523 -0.998 2.271 sum -3.104 -5.283 -2.910 6.783 Atomic orbital electron populations 1.20775 0.89645 1.02846 1.02714 1.18996 0.96258 0.90282 0.98697 1.20868 0.94013 0.96572 1.10532 1.17821 0.92020 0.93595 0.88783 1.19752 0.99808 0.95866 1.36611 0.89999 1.26743 0.99190 1.00203 0.91976 1.69930 1.18543 1.33688 1.21592 0.85279 0.77111 0.78011 0.79510 1.18111 1.19315 1.18693 1.21119 0.99257 0.89745 1.09688 1.19324 0.92533 0.92786 1.01248 1.21070 0.96305 0.94206 1.14436 1.85518 1.05291 1.92990 1.11256 1.25866 0.95804 1.03646 1.01164 1.82989 1.05029 0.95788 1.79683 1.22211 0.95568 0.97140 1.22886 0.90358 0.91578 0.90598 0.86751 0.89985 0.87046 0.96582 0.78207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.28 9.85 71.24 0.70 -2.58 15 2 C -0.04 -1.64 5.87 -19.91 -0.12 -1.76 15 3 C -0.20 -9.52 9.31 22.38 0.21 -9.31 15 4 C 0.08 4.39 5.55 -21.40 -0.12 4.27 15 5 C -0.49 -26.12 9.03 23.38 0.21 -25.91 15 6 H 0.08 4.12 7.90 -2.91 -0.02 4.10 15 7 C 0.04 1.77 5.12 85.20 0.44 2.21 15 8 N -0.81 -42.91 10.99 21.80 0.24 -42.67 15 9 Si 0.98 37.98 29.59 68.60 2.03 40.01 15 10 H -0.26 -9.53 7.11 99.48 0.71 -8.82 15 11 H -0.27 -9.94 7.11 99.48 0.71 -9.23 15 12 H -0.26 -10.01 7.11 99.48 0.71 -9.30 15 13 C -0.18 -9.50 8.51 23.22 0.20 -9.30 15 14 C -0.05 -2.49 6.02 -20.30 -0.12 -2.61 15 15 C -0.13 -5.46 6.21 23.21 0.14 -5.31 15 16 S -0.11 -3.91 25.72 -56.49 -1.45 -5.37 15 17 C -0.13 -4.24 10.81 66.77 0.72 -3.52 15 18 S 0.10 3.49 22.49 -56.49 -1.27 2.22 15 19 C -0.26 -11.53 6.33 23.29 0.15 -11.39 15 20 H 0.08 2.22 8.14 -2.39 -0.02 2.20 15 21 H 0.07 1.93 7.56 -2.39 -0.02 1.91 15 22 H 0.08 2.19 8.07 -2.39 -0.02 2.17 15 23 H 0.11 5.00 8.06 -2.91 -0.02 4.98 15 24 H 0.29 13.94 8.30 -92.71 -0.77 13.17 15 25 H 0.11 6.35 6.10 -2.91 -0.02 6.33 15 26 H 0.07 2.41 9.07 73.35 0.67 3.08 15 27 H 0.20 4.93 8.06 -2.91 -0.02 4.91 15 Total: -1.00 -59.36 263.98 3.83 -55.53 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 1.87 Total: 15.49 kcal Atomic # 6 Polarization: -67.62 SS G_CDS: 2.41 Total: -65.21 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: 0.24 Total: -42.67 kcal Atomic # 14 Polarization: 37.98 SS G_CDS: 2.03 Total: 40.01 kcal Atomic # 16 Polarization: -0.42 SS G_CDS: -2.72 Total: -3.14 kcal Total: -59.36 3.83 -55.53 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306662191.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.914 kcal (2) G-P(sol) polarization free energy of solvation -59.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds