Wall clock time and date at job start Mon Mar 30 2020 06:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37696 * 119.75727 * 2 1 4 4 C 1.38611 * 120.12465 * 179.97438 * 3 2 1 5 5 C 1.37387 * 120.23920 * 0.02562 * 4 3 2 6 6 C 1.40853 * 120.43666 * 359.97438 * 5 4 3 7 7 C 1.46499 * 128.68272 * 180.02562 * 6 5 4 8 8 C 1.40590 * 123.26392 * 0.02562 * 7 6 5 9 9 H 1.08006 * 120.00111 * 217.75537 * 8 7 6 10 10 C 1.39479 * 120.00254 * 37.74778 * 8 7 6 11 11 N 1.31330 * 119.99570 * 19.99320 * 10 8 7 12 12 Si 1.86796 * 120.00366 * 199.99550 * 10 8 7 13 13 H 1.48502 * 109.47249 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47507 * 119.99928 * 12 10 8 15 15 H 1.48505 * 109.46857 * 240.00189 * 12 10 8 16 16 C 1.37813 * 113.47013 * 180.02562 * 7 6 5 17 17 S 1.76200 * 124.58352 * 179.97438 * 16 7 6 18 18 S 1.75173 * 110.82906 * 0.02562 * 16 7 6 19 19 C 1.39349 * 119.06653 * 359.73276 * 6 5 4 20 20 H 1.09005 * 109.46866 * 89.99782 * 1 2 3 21 21 H 1.09001 * 109.47331 * 329.99887 * 1 2 3 22 22 H 1.08999 * 109.47428 * 209.99413 * 1 2 3 23 23 H 1.08004 * 119.93959 * 359.97438 * 3 2 1 24 24 H 1.07997 * 119.88043 * 180.02562 * 4 3 2 25 25 H 1.07999 * 119.77879 * 179.97438 * 5 4 3 26 26 H 0.97005 * 119.99808 * 183.26706 * 11 10 8 27 27 H 1.40993 * 100.00226 * 89.99997 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1904 1.1954 0.0000 4 6 3.5765 1.2043 0.0005 5 6 4.2760 0.0218 0.0005 6 6 3.5940 -1.2106 0.0005 7 6 4.1513 -2.5655 0.0011 8 6 5.5319 -2.8314 0.0022 9 1 5.9227 -3.6598 -0.5702 10 6 6.3968 -2.0254 0.7423 11 7 5.9294 -1.2897 1.7247 12 14 8.2198 -1.9924 0.3363 13 1 8.4894 -2.9041 -0.8046 14 1 8.6207 -0.6100 -0.0288 15 1 8.9986 -2.4376 1.5197 16 6 3.1911 -3.5540 0.0003 17 16 3.5348 -5.2822 0.0000 18 16 1.5827 -2.8600 -0.0017 19 6 2.2005 -1.2133 0.0062 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 0.8900 0.5138 22 1 -0.3634 -0.8900 0.5137 23 1 1.6454 2.1279 -0.0004 24 1 4.1085 2.1441 0.0010 25 1 5.3558 0.0374 0.0005 26 1 6.5222 -0.6936 2.2086 27 1 3.5818 -5.5227 1.3885 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306738122.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:32 Heat of formation + Delta-G solvation = 22.819169 kcal Electronic energy + Delta-G solvation = -13670.159589 eV Core-core repulsion = 11416.559984 eV Total energy + Delta-G solvation = -2253.599605 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.63187 -35.13458 -32.58725 -31.72692 -28.67304 -26.51611 -25.60837 -22.25263 -20.99680 -19.75348 -17.25664 -16.36700 -15.84595 -15.14692 -14.51873 -14.27450 -13.99712 -13.42285 -13.06347 -12.60864 -12.37076 -11.87653 -11.73996 -11.53720 -11.33668 -11.22399 -10.83555 -10.69667 -10.35940 -9.93029 -9.60838 -9.46982 -9.12953 -8.30104 -7.39271 -7.11772 -6.88086 -6.56769 -4.64525 1.71661 2.12911 2.69576 2.81211 2.97036 3.04061 3.10798 3.53477 3.56704 3.81202 3.98634 4.47952 5.01947 5.43351 5.55709 5.78654 5.83035 5.99604 6.20342 6.27354 6.40055 6.63217 6.87241 6.91195 7.12801 7.19513 7.29606 7.65984 7.76699 8.16797 8.40790 8.56950 9.89291 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.018916 B = 0.011744 C = 0.007520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.898222 B = 2383.671848 C = 3722.613968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.084 4.084 3 C -0.114 4.114 4 C -0.155 4.155 5 C -0.037 4.037 6 C -0.045 4.045 7 C 0.169 3.831 8 C -0.424 4.424 9 H 0.101 0.899 10 C 0.075 3.925 11 N -0.778 5.778 12 Si 0.908 3.092 13 H -0.254 1.254 14 H -0.268 1.268 15 H -0.272 1.272 16 C -0.374 4.374 17 S -0.095 6.095 18 S 0.006 5.994 19 C -0.110 4.110 20 H 0.064 0.936 21 H 0.060 0.940 22 H 0.061 0.939 23 H 0.113 0.887 24 H 0.112 0.888 25 H 0.121 0.879 26 H 0.286 0.714 27 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.583 4.013 -1.782 5.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.090 4.090 3 C -0.134 4.134 4 C -0.176 4.176 5 C -0.057 4.057 6 C -0.056 4.056 7 C 0.158 3.842 8 C -0.456 4.456 9 H 0.119 0.881 10 C -0.145 4.145 11 N -0.402 5.402 12 Si 0.731 3.269 13 H -0.177 1.177 14 H -0.193 1.193 15 H -0.197 1.197 16 C -0.601 4.601 17 S 0.059 5.941 18 S 0.263 5.737 19 C -0.226 4.226 20 H 0.083 0.917 21 H 0.079 0.921 22 H 0.080 0.920 23 H 0.131 0.869 24 H 0.130 0.870 25 H 0.139 0.861 26 H 0.097 0.903 27 H 0.006 0.994 Dipole moment (debyes) X Y Z Total from point charges -3.727 2.451 -1.792 4.807 hybrid contribution 2.073 1.693 1.065 2.881 sum -1.654 4.145 -0.727 4.521 Atomic orbital electron populations 1.20698 0.91971 1.01995 1.01677 1.19134 0.94938 0.91079 1.03815 1.20633 0.94222 0.96057 1.02508 1.20757 0.94025 0.97476 1.05330 1.21086 0.99808 0.90299 0.94461 1.19471 0.91034 0.94533 1.00546 1.17804 0.93386 0.87359 0.85691 1.19296 0.90105 1.12353 1.23834 0.88125 1.26016 1.02119 0.93397 0.92985 1.70131 1.38889 1.18385 1.12800 0.86244 0.81106 0.79545 0.80030 1.17724 1.19329 1.19722 1.23770 0.94653 0.96501 1.45194 1.85513 1.93660 1.04717 1.10191 1.83020 1.11129 0.94870 1.84663 1.22486 0.96966 0.97041 1.06137 0.91748 0.92094 0.91969 0.86900 0.87042 0.86115 0.90334 0.99361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.67 9.85 36.00 0.35 -1.31 15 2 C -0.08 -1.64 5.91 -104.25 -0.62 -2.26 15 3 C -0.11 -2.05 9.67 -39.64 -0.38 -2.44 15 4 C -0.15 -2.95 10.01 -39.75 -0.40 -3.34 15 5 C -0.04 -0.82 8.39 -38.90 -0.33 -1.15 15 6 C -0.05 -1.11 5.55 -105.17 -0.58 -1.70 15 7 C 0.17 4.40 5.41 -105.84 -0.57 3.83 15 8 C -0.42 -10.74 8.49 -38.23 -0.32 -11.06 15 9 H 0.10 2.52 7.84 -52.48 -0.41 2.11 15 10 C 0.08 1.76 4.04 -17.30 -0.07 1.69 15 11 N -0.78 -18.82 10.74 55.53 0.60 -18.22 15 12 Si 0.91 17.52 29.61 -169.99 -5.03 12.49 15 13 H -0.25 -4.90 7.11 56.52 0.40 -4.50 15 14 H -0.27 -5.01 7.11 56.52 0.40 -4.61 15 15 H -0.27 -5.24 7.11 56.52 0.40 -4.84 15 16 C -0.37 -9.41 6.80 30.58 0.21 -9.20 15 17 S -0.10 -2.16 25.54 -107.50 -2.75 -4.91 15 18 S 0.01 0.13 22.38 -107.50 -2.41 -2.28 15 19 C -0.11 -2.51 6.26 -38.60 -0.24 -2.76 15 20 H 0.06 0.92 8.14 -51.93 -0.42 0.50 15 21 H 0.06 0.81 8.08 -51.93 -0.42 0.39 15 22 H 0.06 1.00 7.53 -51.93 -0.39 0.61 15 23 H 0.11 1.64 8.06 -52.48 -0.42 1.22 15 24 H 0.11 1.78 8.06 -52.49 -0.42 1.36 15 25 H 0.12 2.71 5.93 -52.49 -0.31 2.40 15 26 H 0.29 6.25 8.31 -40.82 -0.34 5.91 15 27 H 0.04 0.92 9.55 96.90 0.93 1.85 15 LS Contribution 261.45 15.07 3.94 3.94 Total: -1.00 -26.65 261.45 -9.61 -36.27 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -1.01 Total: 2.40 kcal Atomic # 6 Polarization: -26.74 SS G_CDS: -2.95 Total: -29.69 kcal Atomic # 7 Polarization: -18.82 SS G_CDS: 0.60 Total: -18.22 kcal Atomic # 14 Polarization: 17.52 SS G_CDS: -5.03 Total: 12.49 kcal Atomic # 16 Polarization: -2.03 SS G_CDS: -5.15 Total: -7.18 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -26.65 -9.61 -36.27 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306738122.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.085 kcal (2) G-P(sol) polarization free energy of solvation -26.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds