Wall clock time and date at job start Mon Mar 30 2020 06:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38969 * 119.93481 * 2 1 4 4 S 1.76072 * 130.41381 * 359.97438 * 3 2 1 5 5 C 1.75488 * 91.52720 * 180.28418 * 4 3 2 6 6 C 1.32635 * 110.78509 * 359.97438 * 5 4 3 7 7 C 1.40216 * 120.20568 * 180.30677 * 3 2 1 8 8 C 1.42696 * 118.95847 * 359.77041 * 7 3 2 9 9 S 1.76206 * 119.64709 * 180.02562 * 8 7 3 10 10 C 1.35979 * 120.70919 * 359.97438 * 8 7 3 11 11 C 1.40477 * 119.93553 * 179.84972 * 2 1 3 12 12 C 1.41022 * 120.16022 * 359.91894 * 11 2 1 13 13 H 1.08007 * 119.99728 * 25.54047 * 12 11 2 14 14 C 1.39776 * 120.00241 * 205.54072 * 12 11 2 15 15 N 1.30935 * 120.00200 * 15.50915 * 14 12 11 16 16 Si 1.86806 * 120.00222 * 195.50949 * 14 12 11 17 17 H 1.48505 * 109.46819 * 59.99942 * 16 14 12 18 18 H 1.48495 * 109.47190 * 179.97438 * 16 14 12 19 19 H 1.48492 * 109.46956 * 300.00245 * 16 14 12 20 20 H 1.09003 * 109.47307 * 90.00424 * 1 2 3 21 21 H 1.09002 * 109.47179 * 210.00218 * 1 2 3 22 22 H 1.09008 * 109.47297 * 330.00227 * 1 2 3 23 23 H 1.07999 * 124.60342 * 180.02562 * 5 4 3 24 24 H 1.08000 * 122.05334 * 179.97438 * 6 5 4 25 25 H 1.34496 * 103.00072 * 90.00219 * 9 8 7 26 26 H 1.08000 * 119.84236 * 179.97438 * 10 8 7 27 27 H 0.96995 * 120.00461 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2004 1.2043 0.0000 4 16 1.6083 2.8625 -0.0006 5 6 3.2446 3.4964 -0.0088 6 6 4.1315 2.5102 -0.0102 7 6 3.6025 1.2109 -0.0065 8 6 4.2993 -0.0343 -0.0080 9 16 6.0613 -0.0472 -0.0155 10 6 3.6182 -1.2112 -0.0028 11 6 2.2080 -1.2173 0.0032 12 6 1.5049 -2.4398 0.0081 13 1 0.5036 -2.4885 -0.3938 14 6 2.1038 -3.5884 0.5331 15 7 3.1708 -3.4851 1.2851 16 14 1.3822 -5.2710 0.1620 17 1 1.3907 -5.5006 -1.3052 18 1 2.1964 -6.3173 0.8309 19 1 -0.0137 -5.3327 0.6645 20 1 -0.3634 -0.0001 -1.0277 21 1 -0.3634 -0.8900 0.5139 22 1 -0.3634 0.8901 0.5138 23 1 3.4954 4.5469 -0.0115 24 1 5.1954 2.6961 -0.0154 25 1 6.3694 -0.0480 1.2937 26 1 4.1598 -2.1456 -0.0045 27 1 3.5866 -4.2822 1.6491 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306766260.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:58 Heat of formation + Delta-G solvation = 25.274202 kcal Electronic energy + Delta-G solvation = -13577.575354 eV Core-core repulsion = 11324.082208 eV Total energy + Delta-G solvation = -2253.493147 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -38.45862 -35.33396 -33.16100 -31.47121 -28.93091 -26.38234 -25.22429 -22.43887 -20.64328 -19.48485 -18.20723 -16.62153 -15.82266 -15.60878 -14.79208 -14.14736 -13.84647 -13.24097 -13.02655 -12.65635 -12.13444 -11.86579 -11.59834 -11.47467 -11.32713 -11.04398 -10.89771 -10.79512 -10.44506 -9.93696 -9.86020 -9.43285 -9.29738 -8.39382 -7.46680 -7.42259 -7.17398 -6.77808 -4.62582 1.61112 2.28049 2.57068 2.66559 2.83090 2.91460 2.93912 2.99634 3.38953 3.56953 3.68983 4.32798 5.22817 5.71461 6.02108 6.18990 6.35729 6.44823 6.51831 6.59965 6.71969 6.81063 6.92544 7.05656 7.11589 7.50143 7.54842 7.56872 7.79472 8.13647 8.46699 8.51236 9.80073 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.023933 B = 0.008856 C = 0.006597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.671770 B = 3160.802676 C = 4243.052663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.180 4.180 3 C -0.061 4.061 4 S 0.008 5.992 5 C -0.264 4.264 6 C -0.072 4.072 7 C -0.170 4.170 8 C -0.054 4.054 9 S -0.165 6.165 10 C -0.076 4.076 11 C 0.123 3.877 12 C -0.428 4.428 13 H 0.092 0.908 14 C 0.071 3.929 15 N -0.780 5.780 16 Si 0.919 3.081 17 H -0.259 1.259 18 H -0.275 1.275 19 H -0.262 1.262 20 H 0.047 0.953 21 H 0.066 0.934 22 H 0.040 0.960 23 H 0.146 0.854 24 H 0.128 0.872 25 H 0.064 0.936 26 H 0.139 0.861 27 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.412 2.535 -1.088 2.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.188 4.188 3 C -0.178 4.178 4 S 0.268 5.732 5 C -0.397 4.397 6 C -0.102 4.102 7 C -0.179 4.179 8 C -0.169 4.169 9 S -0.007 6.007 10 C -0.098 4.098 11 C 0.114 3.886 12 C -0.456 4.456 13 H 0.110 0.890 14 C -0.150 4.150 15 N -0.404 5.404 16 Si 0.742 3.258 17 H -0.183 1.183 18 H -0.200 1.200 19 H -0.186 1.186 20 H 0.065 0.935 21 H 0.084 0.916 22 H 0.059 0.941 23 H 0.164 0.836 24 H 0.146 0.854 25 H 0.028 0.972 26 H 0.157 0.843 27 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.644 3.143 -1.154 3.410 hybrid contribution 0.408 -1.267 1.060 1.702 sum -0.235 1.876 -0.094 1.893 Atomic orbital electron populations 1.20406 0.92630 1.00961 1.00151 1.19116 0.94431 0.90028 1.15237 1.22078 0.95375 0.95131 1.05199 1.83542 1.08798 0.99023 1.81864 1.24575 0.95175 1.01625 1.18367 1.19841 0.99771 0.91181 0.99439 1.17745 0.91546 0.92310 1.16318 1.20424 0.91608 0.94434 1.10407 1.85312 1.05404 1.98727 1.11294 1.21571 0.94741 0.96276 0.97228 1.17354 0.90962 0.91632 0.88602 1.19653 1.01873 0.91832 1.32266 0.89042 1.26082 0.94218 1.02222 0.92458 1.69795 1.16809 1.32879 1.20898 0.86163 0.79980 0.79406 0.80254 1.18317 1.19988 1.18587 0.93460 0.91557 0.94061 0.83583 0.85388 0.97167 0.84300 0.89927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.70 9.25 36.00 0.33 -1.37 15 2 C -0.18 -4.22 5.97 -103.51 -0.62 -4.84 15 3 C -0.06 -1.41 6.29 -38.57 -0.24 -1.66 15 4 S 0.01 0.15 22.58 -107.50 -2.43 -2.28 15 5 C -0.26 -4.93 11.10 28.83 0.32 -4.61 15 6 C -0.07 -1.47 9.68 -40.71 -0.39 -1.86 15 7 C -0.17 -3.93 5.87 -106.67 -0.63 -4.56 15 8 C -0.05 -1.27 6.13 -38.67 -0.24 -1.51 15 9 S -0.16 -3.30 25.09 -107.50 -2.70 -5.99 15 10 C -0.08 -1.88 8.26 -39.34 -0.32 -2.20 15 11 C 0.12 3.03 5.56 -106.94 -0.59 2.43 15 12 C -0.43 -10.10 8.10 -37.95 -0.31 -10.41 15 13 H 0.09 2.03 6.82 -52.48 -0.36 1.68 15 14 C 0.07 1.59 5.17 -17.36 -0.09 1.50 15 15 N -0.78 -18.25 10.88 55.54 0.60 -17.65 15 16 Si 0.92 16.78 29.59 -169.99 -5.03 11.75 15 17 H -0.26 -4.71 7.11 56.52 0.40 -4.31 15 18 H -0.28 -4.94 7.11 56.52 0.40 -4.54 15 19 H -0.26 -4.72 7.11 56.52 0.40 -4.32 15 20 H 0.05 0.89 8.14 -51.93 -0.42 0.46 15 21 H 0.07 1.31 6.73 -51.93 -0.35 0.96 15 22 H 0.04 0.77 7.58 -51.92 -0.39 0.38 15 23 H 0.15 2.26 8.06 -52.49 -0.42 1.83 15 24 H 0.13 2.36 7.76 -52.49 -0.41 1.95 15 25 H 0.06 1.24 9.07 97.61 0.89 2.13 15 26 H 0.14 3.46 6.14 -52.49 -0.32 3.14 15 27 H 0.29 6.16 8.30 -40.82 -0.34 5.82 15 LS Contribution 259.44 15.07 3.91 3.91 Total: -1.00 -24.80 259.44 -9.35 -34.15 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -0.92 Total: 5.18 kcal Atomic # 6 Polarization: -26.29 SS G_CDS: -2.78 Total: -29.07 kcal Atomic # 7 Polarization: -18.25 SS G_CDS: 0.60 Total: -17.65 kcal Atomic # 14 Polarization: 16.78 SS G_CDS: -5.03 Total: 11.75 kcal Atomic # 16 Polarization: -3.15 SS G_CDS: -5.13 Total: -8.27 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -24.80 -9.35 -34.15 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306766260.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.424 kcal (2) G-P(sol) polarization free energy of solvation -24.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds