Wall clock time and date at job start Mon Mar 30 2020 06:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37550 * 119.51502 * 2 1 4 4 C 1.39999 * 121.64221 * 179.71584 * 3 2 1 5 5 S 1.76105 * 130.47172 * 180.18027 * 4 3 2 6 6 C 1.75496 * 91.52451 * 180.34384 * 5 4 3 7 7 C 1.32571 * 110.65896 * 0.02562 * 6 5 4 8 8 C 1.39508 * 120.22596 * 0.55690 * 4 3 2 9 9 C 1.47851 * 118.16388 * 359.73180 * 8 4 3 10 10 C 1.40276 * 120.43964 * 180.02562 * 9 8 4 11 11 H 1.07996 * 120.00484 * 140.40981 * 10 9 8 12 12 C 1.39946 * 119.99679 * 320.39962 * 10 9 8 13 13 N 1.30924 * 120.00008 * 339.84333 * 12 10 9 14 14 Si 1.86800 * 119.99605 * 159.83734 * 12 10 9 15 15 H 1.48497 * 109.47198 * 90.00529 * 14 12 10 16 16 H 1.48507 * 109.46933 * 210.00290 * 14 12 10 17 17 H 1.48501 * 109.47337 * 329.99937 * 14 12 10 18 18 C 1.38777 * 119.51440 * 180.27281 * 2 1 3 19 19 S 1.76198 * 120.05834 * 0.02562 * 18 2 1 20 20 H 1.08998 * 109.47175 * 269.72567 * 1 2 3 21 21 H 1.09004 * 109.47093 * 149.73322 * 1 2 3 22 22 H 1.08998 * 109.47473 * 29.72760 * 1 2 3 23 23 H 1.08006 * 119.17682 * 0.02562 * 3 2 1 24 24 H 1.08001 * 124.67143 * 179.97438 * 6 5 4 25 25 H 1.08004 * 122.10325 * 180.02562 * 7 6 5 26 26 H 0.96997 * 119.99351 * 181.95144 * 13 12 10 27 27 H 1.40998 * 99.99981 * 90.00034 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1846 1.1970 0.0000 4 6 3.5836 1.2490 0.0059 5 16 4.6761 2.6302 0.0115 6 6 6.0810 1.5784 0.0061 7 6 5.7120 0.3051 0.0001 8 6 4.3302 0.0705 0.0003 9 6 3.6026 -1.2166 -0.0058 10 6 4.3056 -2.4304 -0.0111 11 1 3.9524 -3.2617 0.5810 12 6 5.4647 -2.5643 -0.7838 13 7 5.6844 -1.7457 -1.7816 14 14 6.6984 -3.9110 -0.3914 15 1 6.3494 -5.1386 -1.1505 16 1 8.0606 -3.4617 -0.7759 17 1 6.6660 -4.2031 1.0643 18 6 2.1906 -1.2077 -0.0058 19 16 1.2983 -2.7270 -0.0137 20 1 -0.3633 -0.0049 1.0276 21 1 -0.3633 -0.8876 -0.5180 22 1 -0.3634 0.8924 -0.5096 23 1 1.6234 2.1198 0.0004 24 1 7.1052 1.9213 0.0067 25 1 6.4310 -0.5008 -0.0035 26 1 6.4736 -1.8561 -2.3347 27 1 1.1748 -2.9312 -1.4033 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306767640.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:49 Heat of formation + Delta-G solvation = 31.902949 kcal Electronic energy + Delta-G solvation = -13763.631350 eV Core-core repulsion = 11510.425647 eV Total energy + Delta-G solvation = -2253.205703 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.19852 -34.75204 -33.94483 -30.57657 -29.58426 -25.95996 -25.05116 -22.23659 -21.01181 -19.37814 -17.51972 -16.26986 -15.93831 -15.47247 -14.68804 -14.12549 -13.53603 -13.17112 -12.93733 -12.69079 -12.17275 -11.85626 -11.74983 -11.41831 -11.26887 -10.99444 -10.96502 -10.70476 -10.27661 -10.12055 -9.60390 -9.37596 -9.16056 -8.24114 -7.25757 -7.17104 -6.88567 -6.63548 -4.69952 1.81610 2.34894 2.59015 2.91365 2.93395 2.99156 3.01106 3.08392 3.52422 3.72332 3.87067 4.31944 5.16497 5.79234 5.95842 6.00056 6.19491 6.30574 6.48603 6.60769 6.68028 6.82017 6.92033 7.05926 7.22439 7.54858 7.60291 7.65715 7.84783 8.17389 8.45198 8.53726 9.81639 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.016278 B = 0.013283 C = 0.007610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.712310 B = 2107.511587 C = 3678.605613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.023 3.977 3 C -0.225 4.225 4 C -0.065 4.065 5 S 0.003 5.997 6 C -0.271 4.271 7 C -0.031 4.031 8 C -0.132 4.132 9 C 0.201 3.799 10 C -0.434 4.434 11 H 0.106 0.894 12 C 0.077 3.923 13 N -0.763 5.763 14 Si 0.906 3.094 15 H -0.265 1.265 16 H -0.273 1.273 17 H -0.253 1.253 18 C -0.239 4.239 19 S -0.162 6.162 20 H 0.066 0.934 21 H 0.071 0.929 22 H 0.051 0.949 23 H 0.098 0.902 24 H 0.145 0.855 25 H 0.128 0.872 26 H 0.289 0.711 27 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.820 1.391 1.464 2.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.018 3.982 3 C -0.251 4.251 4 C -0.181 4.181 5 S 0.264 5.736 6 C -0.404 4.404 7 C -0.060 4.060 8 C -0.142 4.142 9 C 0.193 3.807 10 C -0.461 4.461 11 H 0.124 0.876 12 C -0.146 4.146 13 N -0.385 5.385 14 Si 0.729 3.271 15 H -0.189 1.189 16 H -0.197 1.197 17 H -0.176 1.176 18 C -0.354 4.354 19 S -0.005 6.005 20 H 0.085 0.915 21 H 0.089 0.911 22 H 0.070 0.930 23 H 0.116 0.884 24 H 0.163 0.837 25 H 0.145 0.855 26 H 0.100 0.900 27 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges -1.195 2.212 1.501 2.928 hybrid contribution 1.496 -1.124 -1.093 2.167 sum 0.301 1.088 0.409 1.201 Atomic orbital electron populations 1.20890 0.92450 1.01750 1.01881 1.19378 0.94295 0.91856 0.92719 1.19300 0.90286 0.96036 1.19507 1.22439 0.97149 0.94688 1.03826 1.83419 0.98294 1.10782 1.81076 1.24597 1.00109 0.96139 1.19577 1.19808 0.95562 0.95280 0.95359 1.19128 0.91646 0.92402 1.11009 1.18495 0.89284 0.90584 0.82374 1.19678 1.05007 0.98856 1.22572 0.87593 1.26097 0.97624 0.97154 0.93732 1.69906 1.25349 1.32950 1.10317 0.86310 0.79015 0.80756 0.81017 1.18944 1.19737 1.17650 1.20466 0.94470 0.92015 1.28497 1.85818 1.72655 1.30953 1.11050 0.91516 0.91058 0.92993 0.88395 0.83713 0.85465 0.90000 0.97297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.97 9.53 36.00 0.34 -1.63 15 2 C 0.02 0.51 5.87 -104.68 -0.61 -0.10 15 3 C -0.23 -5.03 9.61 -39.17 -0.38 -5.41 15 4 C -0.07 -1.54 6.49 -38.45 -0.25 -1.79 15 5 S 0.00 0.07 23.30 -107.50 -2.50 -2.43 15 6 C -0.27 -5.62 11.11 28.83 0.32 -5.30 15 7 C -0.03 -0.71 8.26 -40.77 -0.34 -1.05 15 8 C -0.13 -3.30 5.51 -104.77 -0.58 -3.88 15 9 C 0.20 5.10 5.51 -104.07 -0.57 4.53 15 10 C -0.43 -10.65 8.04 -38.18 -0.31 -10.96 15 11 H 0.11 2.55 7.49 -52.49 -0.39 2.16 15 12 C 0.08 1.76 3.85 -17.30 -0.07 1.70 15 13 N -0.76 -18.29 10.83 55.55 0.60 -17.69 15 14 Si 0.91 17.22 29.61 -169.99 -5.03 12.19 15 15 H -0.26 -5.00 7.11 56.52 0.40 -4.60 15 16 H -0.27 -5.05 7.11 56.52 0.40 -4.65 15 17 H -0.25 -4.79 7.11 56.52 0.40 -4.39 15 18 C -0.24 -5.69 6.17 -38.26 -0.24 -5.92 15 19 S -0.16 -3.42 22.67 -107.50 -2.44 -5.85 15 20 H 0.07 1.08 8.14 -51.93 -0.42 0.65 15 21 H 0.07 1.23 6.72 -51.93 -0.35 0.88 15 22 H 0.05 0.81 8.07 -51.93 -0.42 0.39 15 23 H 0.10 1.96 8.06 -52.48 -0.42 1.54 15 24 H 0.15 2.55 8.06 -52.49 -0.42 2.13 15 25 H 0.13 2.93 6.08 -52.48 -0.32 2.61 15 26 H 0.29 6.29 8.30 -40.82 -0.34 5.96 15 27 H 0.06 1.30 9.55 96.90 0.93 2.23 15 LS Contribution 258.13 15.07 3.89 3.89 Total: -1.00 -25.70 258.13 -9.11 -34.81 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -0.96 Total: 4.90 kcal Atomic # 6 Polarization: -27.13 SS G_CDS: -2.67 Total: -29.81 kcal Atomic # 7 Polarization: -18.29 SS G_CDS: 0.60 Total: -17.69 kcal Atomic # 14 Polarization: 17.22 SS G_CDS: -5.03 Total: 12.19 kcal Atomic # 16 Polarization: -3.35 SS G_CDS: -4.94 Total: -8.29 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -25.70 -9.11 -34.81 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306767640.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.714 kcal (2) G-P(sol) polarization free energy of solvation -25.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds