Wall clock time and date at job start Mon Mar 30 2020 06:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35185 * 119.57953 * 2 1 4 4 C 1.41244 * 120.36801 * 179.97438 * 3 2 1 5 5 C 1.40885 * 120.18815 * 179.74933 * 4 3 2 6 6 H 1.08005 * 120.00032 * 334.40048 * 5 4 3 7 7 C 1.39694 * 120.00079 * 154.40240 * 5 4 3 8 8 N 1.31002 * 119.99796 * 343.18885 * 7 5 4 9 9 Si 1.86796 * 119.99806 * 163.18994 * 7 5 4 10 10 H 1.48508 * 109.47420 * 60.00061 * 9 7 5 11 11 H 1.48507 * 109.47236 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47550 * 299.99976 * 9 7 5 13 13 C 1.40532 * 119.62427 * 0.03329 * 4 3 2 14 14 C 1.38513 * 120.03560 * 359.97438 * 13 4 3 15 15 S 1.76048 * 130.33005 * 180.02562 * 14 13 4 16 16 C 1.75468 * 91.60061 * 179.97438 * 15 14 13 17 17 S 1.76203 * 124.65912 * 179.97438 * 16 15 14 18 18 C 1.34029 * 110.68344 * 0.02562 * 16 15 14 19 19 C 1.39938 * 115.67989 * 359.97438 * 18 16 15 20 20 H 1.08994 * 109.47579 * 89.99605 * 1 2 3 21 21 H 1.09008 * 109.47118 * 209.99695 * 1 2 3 22 22 H 1.09004 * 109.47390 * 329.99379 * 1 2 3 23 23 H 1.07999 * 119.81437 * 0.02784 * 3 2 1 24 24 H 0.97004 * 119.99752 * 180.02562 * 8 7 5 25 25 H 1.08003 * 119.98267 * 179.97438 * 13 4 3 26 26 H 1.41003 * 99.99897 * 270.02780 * 17 16 15 27 27 H 1.08009 * 122.15863 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1743 1.1757 0.0000 4 6 3.5866 1.1951 0.0005 5 6 4.2782 2.4225 -0.0048 6 1 3.8086 3.3052 -0.4132 7 6 5.5714 2.4979 0.5181 8 7 6.0189 1.5454 1.2983 9 14 6.6624 3.9567 0.1049 10 1 6.0133 5.2083 0.5715 11 1 7.9758 3.7996 0.7799 12 1 6.8653 4.0226 -1.3647 13 6 4.2980 -0.0169 0.0004 14 6 3.6149 -1.2218 0.0002 15 16 4.2204 -2.8749 0.0006 16 6 2.5903 -3.5242 0.0008 17 16 2.1957 -5.2415 0.0006 18 6 1.6865 -2.5345 0.0000 19 6 2.2088 -1.2362 -0.0002 20 1 -0.3634 0.0001 -1.0276 21 1 -0.3634 -0.8901 0.5138 22 1 -0.3634 0.8899 0.5139 23 1 1.6245 2.1052 0.0005 24 1 6.9168 1.5979 1.6617 25 1 5.3780 -0.0087 0.0004 26 1 2.1413 -5.4800 -1.3881 27 1 0.6236 -2.7266 -0.0004 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306827331.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:17 Heat of formation + Delta-G solvation = 10.086305 kcal Electronic energy + Delta-G solvation = -13310.791203 eV Core-core repulsion = 11056.639460 eV Total energy + Delta-G solvation = -2254.151743 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.20750 -36.82643 -34.97912 -33.09630 -30.80862 -27.71214 -26.93970 -24.21189 -22.56530 -21.36579 -19.02467 -18.73214 -17.48005 -16.88062 -16.55008 -16.02810 -15.27325 -14.89410 -14.50436 -14.10908 -13.90080 -13.63393 -13.33739 -13.13144 -12.85233 -12.75354 -12.48073 -12.29124 -11.98037 -11.63342 -11.46097 -11.22959 -10.86750 -10.15154 -9.21724 -9.09428 -8.81053 -8.41642 -6.44527 -0.17966 0.59198 0.92289 1.05331 1.27487 1.35058 1.38134 1.50558 1.58543 1.90977 2.13350 2.62296 3.50975 4.14565 4.38934 4.47746 4.64808 4.84629 4.92832 4.98321 4.99203 5.11272 5.25091 5.29813 5.44857 5.78588 5.89801 6.00269 6.10581 6.45039 6.69995 6.80891 8.12659 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.032061 B = 0.006636 C = 0.005597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.135796 B = 4218.307346 C = 5001.060526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.015 4.015 3 C -0.214 4.214 4 C 0.107 3.893 5 C -0.457 4.457 6 H 0.097 0.903 7 C 0.031 3.969 8 N -0.803 5.803 9 Si 0.990 3.010 10 H -0.251 1.251 11 H -0.269 1.269 12 H -0.258 1.258 13 C -0.200 4.200 14 C -0.079 4.079 15 S 0.017 5.983 16 C -0.278 4.278 17 S -0.074 6.074 18 C 0.000 4.000 19 C -0.234 4.234 20 H 0.081 0.919 21 H 0.072 0.928 22 H 0.075 0.925 23 H 0.121 0.879 24 H 0.295 0.705 25 H 0.100 0.900 26 H 0.093 0.907 27 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.236 -2.645 -2.399 6.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.017 4.017 3 C -0.233 4.233 4 C 0.101 3.899 5 C -0.485 4.485 6 H 0.115 0.885 7 C -0.188 4.188 8 N -0.426 5.426 9 Si 0.809 3.191 10 H -0.175 1.175 11 H -0.194 1.194 12 H -0.182 1.182 13 C -0.228 4.228 14 C -0.196 4.196 15 S 0.277 5.723 16 C -0.504 4.504 17 S 0.080 5.920 18 C -0.032 4.032 19 C -0.241 4.241 20 H 0.099 0.901 21 H 0.091 0.909 22 H 0.094 0.906 23 H 0.139 0.861 24 H 0.106 0.894 25 H 0.118 0.882 26 H 0.057 0.943 27 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -3.885 -4.415 -1.995 6.210 hybrid contribution -0.111 2.011 -0.860 2.190 sum -3.996 -2.403 -2.855 5.468 Atomic orbital electron populations 1.20822 0.89219 1.03280 1.02942 1.19665 0.96606 0.90646 0.94815 1.20838 0.93759 0.97271 1.11464 1.17904 0.92207 0.92965 0.86824 1.20015 0.99371 0.96269 1.32870 0.88456 1.26985 0.99279 1.00744 0.91779 1.69967 1.18682 1.33512 1.20473 0.85117 0.76764 0.77387 0.79817 1.17450 1.19358 1.18224 1.20425 0.98552 0.89900 1.13895 1.22753 0.97127 0.96691 1.03012 1.83747 1.09149 0.97386 1.82046 1.24425 0.97313 0.99690 1.28985 1.86146 1.91370 1.01785 1.12654 1.20497 1.00212 0.89886 0.92628 1.17929 0.91479 0.93896 1.20797 0.90071 0.90876 0.90576 0.86062 0.89445 0.88167 0.94289 0.82395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.11 9.78 71.24 0.70 -2.42 15 2 C -0.01 -0.61 5.90 -19.59 -0.12 -0.72 15 3 C -0.21 -9.65 9.28 22.30 0.21 -9.45 15 4 C 0.11 5.53 5.56 -21.33 -0.12 5.41 15 5 C -0.46 -22.62 9.02 23.27 0.21 -22.41 15 6 H 0.10 4.43 7.90 -2.91 -0.02 4.40 15 7 C 0.03 1.43 5.14 85.17 0.44 1.87 15 8 N -0.80 -40.35 10.97 21.79 0.24 -40.11 15 9 Si 0.99 35.08 29.59 68.60 2.03 37.11 15 10 H -0.25 -8.39 7.11 99.48 0.71 -7.69 15 11 H -0.27 -9.20 7.11 99.48 0.71 -8.49 15 12 H -0.26 -8.99 7.11 99.48 0.71 -8.28 15 13 C -0.20 -10.69 8.70 22.90 0.20 -10.49 15 14 C -0.08 -3.90 6.45 22.91 0.15 -3.76 15 15 S 0.02 0.74 23.28 -56.49 -1.32 -0.58 15 16 C -0.28 -10.68 6.71 66.86 0.45 -10.23 15 17 S -0.07 -2.24 26.17 -56.49 -1.48 -3.72 15 18 C 0.00 0.02 9.48 21.72 0.21 0.22 15 19 C -0.23 -10.38 5.84 -21.32 -0.12 -10.50 15 20 H 0.08 2.10 8.14 -2.39 -0.02 2.08 15 21 H 0.07 1.93 7.10 -2.38 -0.02 1.91 15 22 H 0.08 2.00 8.07 -2.38 -0.02 1.98 15 23 H 0.12 4.87 8.06 -2.91 -0.02 4.85 15 24 H 0.29 13.39 8.30 -92.71 -0.77 12.62 15 25 H 0.10 5.65 6.18 -2.91 -0.02 5.63 15 26 H 0.09 2.48 9.55 73.80 0.70 3.19 15 27 H 0.16 4.90 7.32 -2.91 -0.02 4.88 15 Total: -1.00 -56.26 263.80 3.58 -52.68 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 1.92 Total: 17.09 kcal Atomic # 6 Polarization: -64.66 SS G_CDS: 2.19 Total: -62.47 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: 0.24 Total: -40.11 kcal Atomic # 14 Polarization: 35.08 SS G_CDS: 2.03 Total: 37.11 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.79 Total: -4.29 kcal Total: -56.26 3.58 -52.68 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306827331.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.763 kcal (2) G-P(sol) polarization free energy of solvation -56.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds