Wall clock time and date at job start Mon Mar 30 2020 06:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38336 * 119.96116 * 2 1 4 4 S 1.76195 * 119.54889 * 359.97352 * 3 2 1 5 5 C 1.38916 * 120.89914 * 179.97438 * 3 2 1 6 6 C 1.39501 * 121.37615 * 0.04287 * 5 3 2 7 7 S 1.76077 * 130.54028 * 179.97438 * 6 5 3 8 8 C 1.75510 * 91.51281 * 179.97438 * 7 6 5 9 9 C 1.32742 * 110.67376 * 0.02562 * 8 7 6 10 10 C 1.39795 * 120.14226 * 359.97438 * 6 5 3 11 11 C 1.40122 * 119.95988 * 180.02562 * 2 1 3 12 12 C 1.40605 * 120.34144 * 0.02562 * 11 2 1 13 13 H 1.07991 * 119.99989 * 315.93767 * 12 11 2 14 14 C 1.39924 * 119.99753 * 135.93827 * 12 11 2 15 15 N 1.30872 * 120.00231 * 155.95754 * 14 12 11 16 16 Si 1.86798 * 120.00118 * 335.95805 * 14 12 11 17 17 H 1.48501 * 109.47492 * 95.41172 * 16 14 12 18 18 H 1.48501 * 109.47292 * 215.41434 * 16 14 12 19 19 H 1.48500 * 109.47183 * 335.40929 * 16 14 12 20 20 H 1.09004 * 109.47398 * 275.62474 * 1 2 3 21 21 H 1.09008 * 109.47081 * 35.61790 * 1 2 3 22 22 H 1.08995 * 109.47364 * 155.61893 * 1 2 3 23 23 H 1.34507 * 103.00037 * 90.00106 * 4 3 2 24 24 H 1.08003 * 119.30913 * 180.02562 * 5 3 2 25 25 H 1.07997 * 124.66049 * 179.72678 * 8 7 6 26 26 H 1.08009 * 122.08854 * 180.02562 * 9 8 7 27 27 H 0.96990 * 120.00335 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1985 0.0000 4 16 1.3038 2.7168 -0.0007 5 6 3.5868 1.2212 0.0005 6 6 4.3325 0.0423 0.0002 7 16 6.0752 -0.2097 0.0001 8 6 5.8700 -1.9527 0.0004 9 6 4.5818 -2.2730 0.0000 10 6 3.6861 -1.1972 -0.0002 11 6 2.2067 -1.2140 -0.0005 12 6 1.5101 -2.4353 -0.0016 13 1 0.6586 -2.5718 0.6483 14 6 1.9203 -3.4739 -0.8449 15 7 1.6236 -4.7135 -0.5483 16 14 2.8912 -3.0909 -2.3941 17 1 4.3432 -3.2312 -2.1157 18 1 2.4999 -4.0367 -3.4700 19 1 2.6025 -1.7005 -2.8282 20 1 -0.3634 0.1007 1.0227 21 1 -0.3634 0.8355 -0.5985 22 1 -0.3634 -0.9360 -0.4242 23 1 1.1498 2.9779 1.3098 24 1 4.1000 2.1715 0.0009 25 1 6.6804 -2.6666 -0.0038 26 1 4.2457 -3.2994 0.0005 27 1 1.9082 -5.4335 -1.1326 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306828182.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:35 Heat of formation + Delta-G solvation = 36.654946 kcal Electronic energy + Delta-G solvation = -13852.115869 eV Core-core repulsion = 11599.116229 eV Total energy + Delta-G solvation = -2252.999640 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.54886 -34.81569 -33.93590 -31.37614 -29.39205 -26.42480 -24.88778 -22.72901 -21.03890 -19.06409 -18.37119 -16.83810 -16.25316 -15.54489 -14.81278 -14.17464 -14.01555 -13.37451 -13.17842 -12.81139 -12.31581 -12.13244 -11.77827 -11.53018 -11.30683 -11.04241 -10.97236 -10.55879 -10.26074 -10.16350 -9.75830 -9.59057 -9.38018 -8.30821 -7.58813 -7.53499 -7.24497 -6.90303 -4.67779 1.31657 2.17714 2.24223 2.46983 2.78903 2.97405 3.03995 3.11765 3.19180 3.48706 3.84519 4.16922 4.93031 5.60401 5.85976 6.04257 6.16315 6.33295 6.49060 6.54123 6.62015 6.70920 6.79494 6.92900 7.04239 7.25189 7.35686 7.46335 7.69402 8.00211 8.29336 8.47182 9.75753 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.018219 B = 0.012768 C = 0.008335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.457259 B = 2192.488566 C = 3358.571605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.145 4.145 3 C -0.036 4.036 4 S -0.156 6.156 5 C -0.167 4.167 6 C -0.082 4.082 7 S 0.014 5.986 8 C -0.256 4.256 9 C -0.069 4.069 10 C -0.156 4.156 11 C 0.126 3.874 12 C -0.432 4.432 13 H 0.104 0.896 14 C 0.093 3.907 15 N -0.785 5.785 16 Si 0.880 3.120 17 H -0.245 1.245 18 H -0.280 1.280 19 H -0.245 1.245 20 H 0.045 0.955 21 H 0.064 0.936 22 H 0.070 0.930 23 H 0.068 0.932 24 H 0.110 0.890 25 H 0.151 0.849 26 H 0.134 0.866 27 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.617 4.592 -0.653 5.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.152 4.152 3 C -0.151 4.151 4 S 0.001 5.999 5 C -0.195 4.195 6 C -0.199 4.199 7 S 0.275 5.725 8 C -0.389 4.389 9 C -0.099 4.099 10 C -0.164 4.164 11 C 0.119 3.881 12 C -0.459 4.459 13 H 0.122 0.878 14 C -0.129 4.129 15 N -0.407 5.407 16 Si 0.703 3.297 17 H -0.169 1.169 18 H -0.206 1.206 19 H -0.168 1.168 20 H 0.064 0.936 21 H 0.083 0.917 22 H 0.089 0.911 23 H 0.032 0.968 24 H 0.128 0.872 25 H 0.169 0.831 26 H 0.152 0.848 27 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.428 5.948 -0.900 6.924 hybrid contribution -0.195 -1.793 0.429 1.854 sum 3.234 4.155 -0.471 5.286 Atomic orbital electron populations 1.20610 0.91447 1.02618 1.00501 1.19898 0.95493 0.90949 1.08853 1.20397 0.94132 0.93024 1.07507 1.85412 1.74722 1.28467 1.11258 1.19924 0.91571 0.94872 1.13105 1.22275 0.94686 0.97049 1.05909 1.83532 1.04381 1.03252 1.81326 1.24674 0.99657 0.96864 1.17696 1.19878 0.91823 0.99918 0.98259 1.19384 0.94359 0.90592 1.12022 1.18303 0.87887 0.92579 0.89300 1.19285 1.13134 0.93825 1.19612 0.87812 1.26139 0.93327 0.93721 0.99710 1.69767 1.35183 1.00324 1.35397 0.86783 0.81601 0.81117 0.80225 1.16876 1.20621 1.16815 0.93616 0.91674 0.91124 0.96810 0.87221 0.83134 0.84833 0.89950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.84 9.03 36.00 0.33 -1.51 15 2 C -0.15 -3.23 5.94 -103.88 -0.62 -3.85 15 3 C -0.04 -0.76 6.08 -39.29 -0.24 -1.00 15 4 S -0.16 -2.74 23.97 -107.50 -2.58 -5.32 15 5 C -0.17 -3.54 9.74 -38.86 -0.38 -3.92 15 6 C -0.08 -1.82 6.48 -38.53 -0.25 -2.07 15 7 S 0.01 0.27 23.30 -107.50 -2.50 -2.23 15 8 C -0.26 -5.01 11.11 28.85 0.32 -4.69 15 9 C -0.07 -1.53 6.53 -40.81 -0.27 -1.80 15 10 C -0.16 -3.67 4.74 -104.69 -0.50 -4.17 15 11 C 0.13 3.03 4.74 -104.32 -0.49 2.54 15 12 C -0.43 -10.62 7.90 -38.06 -0.30 -10.92 15 13 H 0.10 2.64 7.74 -52.49 -0.41 2.23 15 14 C 0.09 2.24 4.30 -17.33 -0.07 2.16 15 15 N -0.78 -19.00 13.93 55.55 0.77 -18.23 15 16 Si 0.88 19.36 24.58 -169.99 -4.18 15.18 15 17 H -0.24 -5.24 5.78 56.52 0.33 -4.91 15 18 H -0.28 -5.91 7.11 56.52 0.40 -5.51 15 19 H -0.25 -5.74 7.11 56.52 0.40 -5.34 15 20 H 0.05 0.83 8.14 -51.93 -0.42 0.40 15 21 H 0.06 1.16 6.98 -51.92 -0.36 0.79 15 22 H 0.07 1.40 6.79 -51.93 -0.35 1.05 15 23 H 0.07 1.10 9.07 97.61 0.89 1.99 15 24 H 0.11 2.11 8.06 -52.48 -0.42 1.68 15 25 H 0.15 2.49 8.06 -52.49 -0.42 2.06 15 26 H 0.13 2.98 5.98 -52.48 -0.31 2.67 15 27 H 0.29 6.37 8.30 -40.82 -0.34 6.03 15 LS Contribution 251.48 15.07 3.79 3.79 Total: -1.00 -24.68 251.48 -8.19 -32.88 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -1.03 Total: 3.15 kcal Atomic # 6 Polarization: -26.75 SS G_CDS: -2.47 Total: -29.22 kcal Atomic # 7 Polarization: -19.00 SS G_CDS: 0.77 Total: -18.23 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -4.18 Total: 15.18 kcal Atomic # 16 Polarization: -2.46 SS G_CDS: -5.08 Total: -7.55 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -24.68 -8.19 -32.88 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306828182.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.534 kcal (2) G-P(sol) polarization free energy of solvation -24.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds