Wall clock time and date at job start Mon Mar 30 2020 06:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38336 * 119.96116 * 2 1 4 4 S 1.76195 * 119.54889 * 359.97352 * 3 2 1 5 5 C 1.38916 * 120.89914 * 179.97438 * 3 2 1 6 6 C 1.39501 * 121.37615 * 0.04287 * 5 3 2 7 7 S 1.76077 * 130.54028 * 179.97438 * 6 5 3 8 8 C 1.75510 * 91.51281 * 179.97438 * 7 6 5 9 9 C 1.32742 * 110.67376 * 0.02562 * 8 7 6 10 10 C 1.39795 * 120.14226 * 359.97438 * 6 5 3 11 11 C 1.40122 * 119.95988 * 180.02562 * 2 1 3 12 12 C 1.40605 * 120.34144 * 0.02562 * 11 2 1 13 13 H 1.07991 * 119.99989 * 315.93767 * 12 11 2 14 14 C 1.39924 * 119.99753 * 135.93827 * 12 11 2 15 15 N 1.30872 * 120.00231 * 155.95754 * 14 12 11 16 16 Si 1.86798 * 120.00118 * 335.95805 * 14 12 11 17 17 H 1.48501 * 109.47492 * 95.41172 * 16 14 12 18 18 H 1.48501 * 109.47292 * 215.41434 * 16 14 12 19 19 H 1.48500 * 109.47183 * 335.40929 * 16 14 12 20 20 H 1.09004 * 109.47398 * 275.62474 * 1 2 3 21 21 H 1.09008 * 109.47081 * 35.61790 * 1 2 3 22 22 H 1.08995 * 109.47364 * 155.61893 * 1 2 3 23 23 H 1.34507 * 103.00037 * 90.00106 * 4 3 2 24 24 H 1.08003 * 119.30913 * 180.02562 * 5 3 2 25 25 H 1.07997 * 124.66049 * 179.72678 * 8 7 6 26 26 H 1.08009 * 122.08854 * 180.02562 * 9 8 7 27 27 H 0.96990 * 120.00335 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1985 0.0000 4 16 1.3038 2.7168 -0.0007 5 6 3.5868 1.2212 0.0005 6 6 4.3325 0.0423 0.0002 7 16 6.0752 -0.2097 0.0001 8 6 5.8700 -1.9527 0.0004 9 6 4.5818 -2.2730 0.0000 10 6 3.6861 -1.1972 -0.0002 11 6 2.2067 -1.2140 -0.0005 12 6 1.5101 -2.4353 -0.0016 13 1 0.6586 -2.5718 0.6483 14 6 1.9203 -3.4739 -0.8449 15 7 1.6236 -4.7135 -0.5483 16 14 2.8912 -3.0909 -2.3941 17 1 4.3432 -3.2312 -2.1157 18 1 2.4999 -4.0367 -3.4700 19 1 2.6025 -1.7005 -2.8282 20 1 -0.3634 0.1007 1.0227 21 1 -0.3634 0.8355 -0.5985 22 1 -0.3634 -0.9360 -0.4242 23 1 1.1498 2.9779 1.3098 24 1 4.1000 2.1715 0.0009 25 1 6.6804 -2.6666 -0.0038 26 1 4.2457 -3.2994 0.0005 27 1 1.9082 -5.4335 -1.1326 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306828182.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:34 Heat of formation + Delta-G solvation = 24.419829 kcal Electronic energy + Delta-G solvation = -13852.646424 eV Core-core repulsion = 11599.116229 eV Total energy + Delta-G solvation = -2253.530195 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.22817 -36.46825 -35.68104 -33.05771 -31.07175 -28.07493 -26.60180 -24.37452 -22.71528 -20.72537 -20.06779 -18.38091 -17.86138 -17.21824 -16.51628 -15.80472 -15.59849 -15.07691 -14.83920 -14.49446 -13.92167 -13.81168 -13.34992 -13.20706 -13.04142 -12.66371 -12.56706 -12.22531 -11.91684 -11.81537 -11.41225 -11.22460 -11.08555 -9.99291 -9.19112 -9.01897 -8.95371 -8.53061 -6.48101 -0.32070 0.51949 0.64242 0.90815 1.15539 1.25127 1.30664 1.40998 1.45319 1.97613 2.09185 2.43381 3.17425 4.02305 4.21273 4.44446 4.54413 4.66686 4.86634 4.97286 4.98678 5.04900 5.16475 5.28188 5.40631 5.56589 5.65118 5.79209 6.00580 6.15491 6.55130 6.69821 8.05313 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.018219 B = 0.012768 C = 0.008335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.457259 B = 2192.488566 C = 3358.571605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.163 4.163 3 C -0.055 4.055 4 S -0.125 6.125 5 C -0.156 4.156 6 C -0.119 4.119 7 S 0.077 5.923 8 C -0.235 4.235 9 C -0.105 4.105 10 C -0.166 4.166 11 C 0.105 3.895 12 C -0.462 4.462 13 H 0.078 0.922 14 C 0.076 3.924 15 N -0.821 5.821 16 Si 0.918 3.082 17 H -0.234 1.234 18 H -0.268 1.268 19 H -0.270 1.270 20 H 0.054 0.946 21 H 0.082 0.918 22 H 0.057 0.943 23 H 0.080 0.920 24 H 0.132 0.868 25 H 0.186 0.814 26 H 0.124 0.876 27 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.488 6.348 -0.922 7.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.169 4.169 3 C -0.170 4.170 4 S 0.033 5.967 5 C -0.183 4.183 6 C -0.236 4.236 7 S 0.339 5.661 8 C -0.368 4.368 9 C -0.134 4.134 10 C -0.173 4.173 11 C 0.099 3.901 12 C -0.490 4.490 13 H 0.096 0.904 14 C -0.143 4.143 15 N -0.445 5.445 16 Si 0.740 3.260 17 H -0.157 1.157 18 H -0.193 1.193 19 H -0.194 1.194 20 H 0.073 0.927 21 H 0.100 0.900 22 H 0.076 0.924 23 H 0.045 0.955 24 H 0.150 0.850 25 H 0.203 0.797 26 H 0.142 0.858 27 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.310 7.705 -1.166 9.430 hybrid contribution -0.622 -2.099 0.601 2.270 sum 4.688 5.606 -0.565 7.330 Atomic orbital electron populations 1.20581 0.90102 1.02599 1.01253 1.20262 0.96800 0.91147 1.08711 1.20700 0.94757 0.94600 1.06930 1.85244 1.74012 1.25368 1.12099 1.20337 0.91870 0.95571 1.10559 1.22687 0.97145 0.96934 1.06866 1.83300 1.01089 1.01806 1.79937 1.25247 0.99671 0.98501 1.13389 1.19898 0.92767 0.99410 1.01332 1.19669 0.94480 0.91826 1.11351 1.18527 0.88680 0.92971 0.89961 1.19124 1.13495 0.95202 1.21215 0.90431 1.26447 0.93716 0.93457 1.00663 1.69769 1.37344 1.00839 1.36584 0.86250 0.81549 0.79541 0.78705 1.15721 1.19318 1.19404 0.92687 0.89970 0.92445 0.95529 0.84983 0.79665 0.85795 0.89205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.44 9.03 71.23 0.64 -2.80 15 2 C -0.16 -7.24 5.94 -19.38 -0.12 -7.36 15 3 C -0.06 -2.25 6.08 22.46 0.14 -2.11 15 4 S -0.12 -4.03 23.97 -56.49 -1.35 -5.38 15 5 C -0.16 -6.26 9.74 22.74 0.22 -6.04 15 6 C -0.12 -5.04 6.48 22.95 0.15 -4.90 15 7 S 0.08 2.66 23.30 -56.49 -1.32 1.35 15 8 C -0.23 -8.44 11.11 66.65 0.74 -7.70 15 9 C -0.10 -4.50 6.53 21.52 0.14 -4.36 15 10 C -0.17 -7.70 4.74 -19.91 -0.09 -7.80 15 11 C 0.11 5.14 4.74 -19.67 -0.09 5.05 15 12 C -0.46 -23.85 7.90 23.26 0.18 -23.67 15 13 H 0.08 4.25 7.74 -2.91 -0.02 4.23 15 14 C 0.08 3.77 4.30 85.24 0.37 4.13 15 15 N -0.82 -41.27 13.93 21.83 0.30 -40.97 15 16 Si 0.92 40.27 24.58 68.60 1.69 41.95 15 17 H -0.23 -9.69 5.78 99.48 0.57 -9.11 15 18 H -0.27 -11.00 7.11 99.48 0.71 -10.29 15 19 H -0.27 -12.76 7.11 99.48 0.71 -12.05 15 20 H 0.05 1.99 8.14 -2.38 -0.02 1.97 15 21 H 0.08 2.84 6.98 -2.38 -0.02 2.83 15 22 H 0.06 2.36 6.79 -2.39 -0.02 2.35 15 23 H 0.08 2.37 9.07 73.35 0.67 3.04 15 24 H 0.13 4.61 8.06 -2.91 -0.02 4.58 15 25 H 0.19 5.28 8.06 -2.91 -0.02 5.26 15 26 H 0.12 5.55 5.98 -2.91 -0.02 5.53 15 27 H 0.30 13.44 8.30 -92.72 -0.77 12.67 15 Total: -1.00 -52.95 251.48 3.34 -49.61 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: 1.75 Total: 11.00 kcal Atomic # 6 Polarization: -59.83 SS G_CDS: 2.28 Total: -57.55 kcal Atomic # 7 Polarization: -41.27 SS G_CDS: 0.30 Total: -40.97 kcal Atomic # 14 Polarization: 40.27 SS G_CDS: 1.69 Total: 41.95 kcal Atomic # 16 Polarization: -1.37 SS G_CDS: -2.67 Total: -4.04 kcal Total: -52.95 3.34 -49.61 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306828182.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.025 kcal (2) G-P(sol) polarization free energy of solvation -52.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds