Wall clock time and date at job start Mon Mar 30 2020 06:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37500 * 119.75947 * 2 1 4 4 C 1.38505 * 120.34379 * 179.97438 * 3 2 1 5 5 C 1.38422 * 120.09003 * 359.60652 * 4 3 2 6 6 S 1.76203 * 119.89288 * 179.97438 * 5 4 3 7 7 C 1.40469 * 120.21054 * 0.63320 * 5 4 3 8 8 S 1.75782 * 130.19620 * 179.27903 * 7 5 4 9 9 C 1.69977 * 93.21995 * 180.02562 * 8 7 5 10 10 C 1.36448 * 111.92860 * 359.97438 * 9 8 7 11 11 C 1.40815 * 123.30625 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99694 * 150.87497 * 11 10 9 13 13 C 1.39679 * 120.00002 * 330.87529 * 11 10 9 14 14 N 1.31093 * 119.99843 * 351.26888 * 13 11 10 15 15 Si 1.86802 * 120.00155 * 171.26579 * 13 11 10 16 16 H 1.48495 * 109.46729 * 59.99789 * 15 13 11 17 17 H 1.48492 * 109.47273 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.46716 * 300.00260 * 15 13 11 19 19 C 1.39176 * 119.58631 * 359.54224 * 7 5 4 20 20 H 1.08999 * 109.47394 * 263.63321 * 1 2 3 21 21 H 1.08995 * 109.47170 * 23.63776 * 1 2 3 22 22 H 1.09007 * 109.46758 * 143.63987 * 1 2 3 23 23 H 1.08000 * 119.82974 * 0.02562 * 3 2 1 24 24 H 1.07997 * 119.95693 * 180.02562 * 4 3 2 25 25 H 1.34499 * 102.99688 * 270.69470 * 6 5 4 26 26 H 1.08001 * 124.03804 * 179.97438 * 9 8 7 27 27 H 0.97001 * 120.00267 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1895 1.1937 0.0000 4 6 3.5745 1.2078 0.0005 5 6 4.2807 0.0173 0.0093 6 16 6.0425 0.0413 0.0093 7 6 3.5973 -1.2100 0.0043 8 16 4.2184 -2.8544 -0.0041 9 6 2.6645 -3.5433 -0.0064 10 6 1.6856 -2.5928 -0.0007 11 6 0.3110 -2.8984 -0.0017 12 1 -0.3932 -2.2205 0.4577 13 6 -0.1417 -4.0782 -0.5968 14 7 0.6825 -4.8151 -1.3012 15 14 -1.9215 -4.6059 -0.3889 16 1 -2.8163 -3.5583 -0.9429 17 1 -2.1468 -5.8832 -1.1120 18 1 -2.2160 -4.7960 1.0542 19 6 2.2055 -1.2215 0.0001 20 1 -0.3634 -0.1140 1.0213 21 1 -0.3633 0.9414 -0.4120 22 1 -0.3633 -0.8277 -0.6093 23 1 1.6428 2.1251 0.0004 24 1 4.1042 2.1489 0.0009 25 1 6.3449 0.0517 -1.3013 26 1 2.4746 -4.6065 -0.0118 27 1 0.3683 -5.6346 -1.7142 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306834796.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:59 Heat of formation + Delta-G solvation = 27.592026 kcal Electronic energy + Delta-G solvation = -13590.573402 eV Core-core repulsion = 11337.180763 eV Total energy + Delta-G solvation = -2253.392638 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.81749 -34.99091 -32.36696 -32.13753 -28.46092 -26.88473 -25.28567 -22.55610 -21.06986 -19.73113 -17.77333 -16.54145 -16.13489 -15.25158 -14.79965 -14.43790 -14.00092 -13.48249 -12.91534 -12.87941 -12.05243 -11.91537 -11.64592 -11.39723 -11.23279 -11.07233 -10.97183 -10.54096 -10.36645 -9.93348 -9.81501 -9.40551 -9.13327 -8.33988 -7.78890 -7.46473 -6.74515 -6.65360 -4.34733 1.40264 1.86918 2.15835 2.78763 2.95615 3.06574 3.08642 3.17523 3.66736 3.79887 3.96660 4.37094 5.18947 5.38312 5.55423 5.73226 5.90135 6.07196 6.27242 6.30565 6.61117 6.71133 6.80842 6.83627 7.15157 7.16456 7.45167 7.68465 7.91360 8.42380 8.74640 8.85333 10.29241 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.030701 B = 0.008171 C = 0.006575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.815984 B = 3425.837427 C = 4257.488965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.007 4.007 3 C -0.164 4.164 4 C -0.065 4.065 5 C -0.097 4.097 6 S -0.143 6.143 7 C -0.107 4.107 8 S 0.078 5.922 9 C -0.352 4.352 10 C 0.085 3.915 11 C -0.444 4.444 12 H 0.085 0.915 13 C 0.069 3.931 14 N -0.804 5.804 15 Si 0.909 3.091 16 H -0.266 1.266 17 H -0.280 1.280 18 H -0.265 1.265 19 C -0.071 4.071 20 H 0.069 0.931 21 H 0.052 0.948 22 H 0.098 0.902 23 H 0.121 0.879 24 H 0.125 0.875 25 H 0.066 0.934 26 H 0.157 0.843 27 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.559 6.924 1.158 7.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.009 4.009 3 C -0.188 4.188 4 C -0.088 4.088 5 C -0.216 4.216 6 S 0.014 5.986 7 C -0.226 4.226 8 S 0.343 5.657 9 C -0.488 4.488 10 C 0.076 3.924 11 C -0.477 4.477 12 H 0.103 0.897 13 C -0.146 4.146 14 N -0.431 5.431 15 Si 0.734 3.266 16 H -0.191 1.191 17 H -0.205 1.205 18 H -0.190 1.190 19 C -0.083 4.083 20 H 0.088 0.912 21 H 0.071 0.929 22 H 0.117 0.883 23 H 0.138 0.862 24 H 0.143 0.857 25 H 0.031 0.969 26 H 0.174 0.826 27 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.901 5.937 1.230 7.210 hybrid contribution -3.099 0.161 -1.138 3.305 sum 0.802 6.098 0.092 6.151 Atomic orbital electron populations 1.21151 0.91329 1.02883 1.02843 1.19900 0.95985 0.91215 0.93799 1.20642 0.93545 0.97050 1.07515 1.21150 0.94012 0.95971 0.97656 1.20234 0.93103 0.93634 1.14610 1.85579 1.03186 1.98451 1.11371 1.22911 0.96986 0.97459 1.05231 1.82100 1.11167 0.93467 1.78939 1.24396 0.92800 1.03319 1.28303 1.17272 0.94496 0.86053 0.94542 1.19101 0.91724 1.04388 1.32523 0.89707 1.25779 0.99616 0.95896 0.93347 1.69876 1.36553 1.12374 1.24316 0.86343 0.82305 0.78478 0.79449 1.19109 1.20488 1.18980 1.19678 0.91136 0.94943 1.02555 0.91224 0.92942 0.88346 0.86152 0.85697 0.96927 0.82586 0.91209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 8.51 36.01 0.31 -1.91 15 2 C -0.01 -0.14 5.93 -103.96 -0.62 -0.76 15 3 C -0.16 -2.82 9.62 -39.75 -0.38 -3.20 15 4 C -0.07 -1.12 9.76 -39.42 -0.38 -1.51 15 5 C -0.10 -1.91 6.14 -38.67 -0.24 -2.15 15 6 S -0.14 -2.45 25.44 -107.50 -2.74 -5.18 15 7 C -0.11 -2.41 6.32 -38.39 -0.24 -2.65 15 8 S 0.08 1.77 22.58 -107.50 -2.43 -0.66 15 9 C -0.35 -9.09 9.46 30.09 0.28 -8.81 15 10 C 0.09 2.20 5.62 -106.17 -0.60 1.60 15 11 C -0.44 -11.21 7.47 -38.07 -0.28 -11.49 15 12 H 0.09 1.98 5.48 -52.49 -0.29 1.69 15 13 C 0.07 1.71 5.36 -17.33 -0.09 1.62 15 14 N -0.80 -20.85 11.09 55.54 0.62 -20.23 15 15 Si 0.91 18.45 29.57 -169.99 -5.03 13.42 15 16 H -0.27 -5.26 7.11 56.52 0.40 -4.86 15 17 H -0.28 -5.63 7.11 56.52 0.40 -5.23 15 18 H -0.27 -5.34 7.11 56.52 0.40 -4.94 15 19 C -0.07 -1.67 5.99 -105.22 -0.63 -2.30 15 20 H 0.07 1.16 8.00 -51.93 -0.42 0.74 15 21 H 0.05 0.76 8.02 -51.93 -0.42 0.34 15 22 H 0.10 1.94 5.63 -51.92 -0.29 1.64 15 23 H 0.12 1.67 8.04 -52.49 -0.42 1.25 15 24 H 0.13 1.76 8.06 -52.49 -0.42 1.34 15 25 H 0.07 1.07 9.07 97.61 0.89 1.96 15 26 H 0.16 4.26 6.66 -52.49 -0.35 3.91 15 27 H 0.28 6.64 8.30 -40.82 -0.34 6.31 15 LS Contribution 257.46 15.07 3.88 3.88 Total: -1.00 -26.74 257.46 -9.43 -36.17 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -0.86 Total: 4.16 kcal Atomic # 6 Polarization: -28.67 SS G_CDS: -2.88 Total: -31.55 kcal Atomic # 7 Polarization: -20.85 SS G_CDS: 0.62 Total: -20.23 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.03 Total: 13.42 kcal Atomic # 16 Polarization: -0.68 SS G_CDS: -5.16 Total: -5.84 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -26.74 -9.43 -36.17 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306834796.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.760 kcal (2) G-P(sol) polarization free energy of solvation -26.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds