Wall clock time and date at job start Mon Mar 30 2020 06:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37580 * 119.93984 * 2 1 4 4 C 1.38175 * 121.09125 * 179.97438 * 3 2 1 5 5 C 1.39577 * 121.46327 * 0.04599 * 4 3 2 6 6 S 1.76050 * 130.50943 * 179.97438 * 5 4 3 7 7 C 1.75490 * 91.61894 * 179.82637 * 6 5 4 8 8 C 1.33531 * 110.63730 * 0.30791 * 7 6 5 9 9 S 1.76200 * 122.21652 * 179.89695 * 8 7 6 10 10 C 1.39777 * 120.03488 * 359.97368 * 5 4 3 11 11 C 1.40369 * 119.93942 * 180.02562 * 2 1 3 12 12 C 1.40589 * 120.40475 * 359.97438 * 11 2 1 13 13 H 1.07995 * 120.00118 * 130.30264 * 12 11 2 14 14 C 1.39826 * 119.99801 * 310.30120 * 12 11 2 15 15 N 1.30929 * 120.00221 * 340.61476 * 14 12 11 16 16 Si 1.86796 * 119.99773 * 160.60625 * 14 12 11 17 17 H 1.48508 * 109.46907 * 60.00791 * 16 14 12 18 18 H 1.48504 * 109.47122 * 179.97438 * 16 14 12 19 19 H 1.48492 * 109.47832 * 300.00591 * 16 14 12 20 20 H 1.08994 * 109.47342 * 269.97285 * 1 2 3 21 21 H 1.09002 * 109.46890 * 29.97889 * 1 2 3 22 22 H 1.09003 * 109.47020 * 149.97397 * 1 2 3 23 23 H 1.08007 * 119.45562 * 359.97438 * 3 2 1 24 24 H 1.07995 * 119.27305 * 179.97438 * 4 3 2 25 25 H 1.07999 * 124.68108 * 180.21961 * 7 6 5 26 26 H 1.34502 * 102.99986 * 269.70956 * 9 8 7 27 27 H 0.96996 * 120.00197 * 185.09859 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1937 1.1922 0.0000 4 6 3.5752 1.2200 0.0005 5 6 4.3275 0.0443 0.0001 6 16 6.0713 -0.1975 0.0000 7 6 5.8794 -1.9419 0.0048 8 6 4.5859 -2.2731 -0.0005 9 16 4.0456 -3.9503 -0.0004 10 6 3.6853 -1.1972 -0.0003 11 6 2.2076 -1.2164 -0.0005 12 6 1.5120 -2.4381 -0.0005 13 1 1.7702 -3.2065 -0.7141 14 6 0.4858 -2.6583 0.9233 15 7 0.4127 -1.9274 2.0072 16 14 -0.7811 -3.9950 0.6111 17 1 -0.0987 -5.3104 0.5127 18 1 -1.7547 -4.0258 1.7319 19 1 -1.4964 -3.7123 -0.6591 20 1 -0.3634 -0.0005 1.0276 21 1 -0.3633 0.8902 -0.5135 22 1 -0.3633 -0.8898 -0.5143 23 1 1.6438 2.1218 -0.0004 24 1 4.0842 2.1724 0.0001 25 1 6.6950 -2.6498 0.0097 26 1 3.9524 -4.2382 -1.3109 27 1 -0.2534 -2.1277 2.6832 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306834839.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:37 Heat of formation + Delta-G solvation = 27.335666 kcal Electronic energy + Delta-G solvation = -13846.225011 eV Core-core repulsion = 11592.821256 eV Total energy + Delta-G solvation = -2253.403755 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.92252 -36.59699 -35.25186 -32.20501 -30.82229 -27.87067 -26.56540 -24.17731 -22.73025 -20.80233 -19.53291 -18.38629 -17.55886 -16.78103 -16.44406 -15.89536 -15.36500 -14.81751 -14.56242 -14.32331 -13.77586 -13.37027 -13.18300 -13.07339 -12.80093 -12.59465 -12.38621 -12.12150 -11.89445 -11.64982 -11.36221 -11.16275 -10.68653 -9.82702 -9.02548 -8.72188 -8.57387 -8.15323 -6.17942 -0.10457 0.46873 0.89050 0.93716 1.19120 1.45028 1.49879 1.52701 1.66160 2.23490 2.28728 2.79756 3.42188 4.12798 4.37254 4.52234 4.68409 4.83131 4.99125 5.13223 5.18022 5.23291 5.34720 5.37183 5.67850 5.75078 5.90730 6.17629 6.23988 6.65926 6.90914 7.01017 8.45108 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.023381 B = 0.010921 C = 0.007832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.279869 B = 2563.309006 C = 3574.288229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.182 4.182 3 C -0.066 4.066 4 C -0.213 4.213 5 C -0.121 4.121 6 S 0.093 5.907 7 C -0.195 4.195 8 C -0.078 4.078 9 S -0.100 6.100 10 C -0.176 4.176 11 C 0.134 3.866 12 C -0.450 4.450 13 H 0.083 0.917 14 C 0.058 3.942 15 N -0.817 5.817 16 Si 0.952 3.048 17 H -0.262 1.262 18 H -0.271 1.271 19 H -0.259 1.259 20 H 0.052 0.948 21 H 0.051 0.949 22 H 0.046 0.954 23 H 0.125 0.875 24 H 0.120 0.880 25 H 0.192 0.808 26 H 0.066 0.934 27 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.563 0.225 -2.757 4.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.186 4.186 3 C -0.087 4.087 4 C -0.238 4.238 5 C -0.238 4.238 6 S 0.355 5.645 7 C -0.332 4.332 8 C -0.202 4.202 9 S 0.055 5.945 10 C -0.183 4.183 11 C 0.129 3.871 12 C -0.479 4.479 13 H 0.101 0.899 14 C -0.158 4.158 15 N -0.443 5.443 16 Si 0.774 3.226 17 H -0.186 1.186 18 H -0.195 1.195 19 H -0.184 1.184 20 H 0.071 0.929 21 H 0.070 0.930 22 H 0.065 0.935 23 H 0.143 0.857 24 H 0.138 0.862 25 H 0.209 0.791 26 H 0.030 0.970 27 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.447 0.310 -2.340 5.034 hybrid contribution -1.426 -0.624 -0.820 1.759 sum 3.021 -0.314 -3.160 4.383 Atomic orbital electron populations 1.20393 0.91782 0.99872 1.00561 1.19975 0.96020 0.92501 1.10063 1.20706 0.93414 0.97272 0.97271 1.19921 0.93438 0.94806 1.15596 1.22659 0.96572 0.97388 1.07166 1.83226 1.02079 1.00542 1.78665 1.25838 0.98797 0.98892 1.09626 1.19972 0.94506 0.95971 1.09768 1.85442 1.91223 1.07299 1.10525 1.19722 0.95275 0.90909 1.12438 1.18584 0.87619 0.93937 0.87010 1.19352 1.12783 1.00087 1.15718 0.89885 1.26226 0.97486 0.98336 0.93743 1.69879 1.31633 1.36708 1.06080 0.85692 0.78356 0.79401 0.79189 1.18625 1.19522 1.18381 0.92937 0.93009 0.93469 0.85664 0.86235 0.79071 0.97017 0.90275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -3.03 8.33 71.24 0.59 -2.44 15 2 C -0.18 -8.74 5.58 -19.50 -0.11 -8.85 15 3 C -0.07 -2.85 9.60 22.10 0.21 -2.64 15 4 C -0.21 -9.05 10.02 22.58 0.23 -8.83 15 5 C -0.12 -5.42 6.48 22.97 0.15 -5.27 15 6 S 0.09 3.30 23.29 -56.49 -1.32 1.99 15 7 C -0.19 -7.10 10.92 66.75 0.73 -6.37 15 8 C -0.08 -3.38 6.05 21.71 0.13 -3.25 15 9 S -0.10 -4.07 22.68 -56.49 -1.28 -5.35 15 10 C -0.18 -8.60 6.03 -19.88 -0.12 -8.72 15 11 C 0.13 6.87 5.35 -19.66 -0.11 6.76 15 12 C -0.45 -22.60 6.40 23.23 0.15 -22.45 15 13 H 0.08 4.13 6.50 -2.91 -0.02 4.11 15 14 C 0.06 2.76 3.55 85.21 0.30 3.06 15 15 N -0.82 -40.84 11.10 21.81 0.24 -40.60 15 16 Si 0.95 37.05 29.60 68.60 2.03 39.08 15 17 H -0.26 -10.10 7.11 99.48 0.71 -9.39 15 18 H -0.27 -10.11 7.11 99.48 0.71 -9.40 15 19 H -0.26 -9.81 7.11 99.48 0.71 -9.11 15 20 H 0.05 2.39 6.83 -2.39 -0.02 2.37 15 21 H 0.05 1.91 8.08 -2.39 -0.02 1.89 15 22 H 0.05 2.10 6.46 -2.39 -0.02 2.09 15 23 H 0.13 4.58 8.06 -2.91 -0.02 4.55 15 24 H 0.12 4.36 8.06 -2.91 -0.02 4.34 15 25 H 0.19 5.55 8.06 -2.91 -0.02 5.53 15 26 H 0.07 2.47 9.07 73.35 0.67 3.14 15 27 H 0.29 13.21 8.31 -92.71 -0.77 12.44 15 Total: -1.00 -55.03 255.71 3.71 -51.32 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: 1.88 Total: 12.56 kcal Atomic # 6 Polarization: -61.15 SS G_CDS: 2.16 Total: -59.00 kcal Atomic # 7 Polarization: -40.84 SS G_CDS: 0.24 Total: -40.60 kcal Atomic # 14 Polarization: 37.05 SS G_CDS: 2.03 Total: 39.08 kcal Atomic # 16 Polarization: -0.77 SS G_CDS: -2.60 Total: -3.37 kcal Total: -55.03 3.71 -51.32 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306834839.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.659 kcal (2) G-P(sol) polarization free energy of solvation -55.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds