Wall clock time and date at job start Mon Mar 30 2020 06:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40547 * 119.87752 * 2 1 4 4 C 1.46670 * 129.44887 * 359.97438 * 3 2 1 5 5 C 1.40799 * 123.30093 * 0.02562 * 4 3 2 6 6 H 1.08000 * 119.99792 * 31.06477 * 5 4 3 7 7 C 1.39708 * 120.00105 * 211.07045 * 5 4 3 8 8 N 1.31079 * 119.99804 * 10.02276 * 7 5 4 9 9 Si 1.86797 * 119.99971 * 190.02565 * 7 5 4 10 10 H 1.48501 * 109.47203 * 359.97438 * 9 7 5 11 11 H 1.48507 * 109.47302 * 119.99667 * 9 7 5 12 12 H 1.48502 * 109.47232 * 239.99550 * 9 7 5 13 13 C 1.36432 * 113.40013 * 180.02562 * 4 3 2 14 14 S 1.69975 * 111.95562 * 359.97438 * 13 4 3 15 15 C 1.39340 * 119.31909 * 180.02562 * 3 2 1 16 16 C 1.39893 * 119.73274 * 359.95345 * 15 3 2 17 17 C 1.37481 * 120.49518 * 0.02676 * 16 15 3 18 18 C 1.38152 * 119.87361 * 179.97438 * 2 1 3 19 19 S 1.76206 * 119.96017 * 0.02621 * 18 2 1 20 20 H 1.09007 * 109.47003 * 276.62931 * 1 2 3 21 21 H 1.09003 * 109.46897 * 36.62264 * 1 2 3 22 22 H 1.08997 * 109.47278 * 156.62509 * 1 2 3 23 23 H 0.97001 * 119.99760 * 180.02562 * 8 7 5 24 24 H 1.07993 * 124.02534 * 180.02562 * 13 4 3 25 25 H 1.07990 * 119.75052 * 180.29801 * 16 15 3 26 26 H 1.08005 * 119.93882 * 179.97438 * 17 16 15 27 27 H 1.34502 * 102.99636 * 269.97432 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2071 1.2187 0.0000 4 6 1.6893 2.5909 -0.0005 5 6 0.3154 2.8987 -0.0006 6 1 -0.3866 2.2351 0.4823 7 6 -0.1397 4.0624 -0.6254 8 7 0.6738 4.7642 -1.3763 9 14 -1.9076 4.6183 -0.3907 10 1 -2.6145 3.6592 0.4956 11 1 -1.9240 5.9686 0.2272 12 1 -2.5898 4.6689 -1.7088 13 6 2.6695 3.5399 -0.0009 14 16 4.2227 2.8494 0.0000 15 6 3.6005 1.2051 -0.0005 16 6 4.2824 -0.0164 -0.0001 17 6 3.5881 -1.2030 0.0003 18 6 2.1951 -1.1979 0.0005 19 16 1.3097 -2.7214 0.0005 20 1 -0.3633 0.1186 1.0209 21 1 -0.3633 0.8248 -0.6131 22 1 -0.3633 -0.9433 -0.4077 23 1 0.3579 5.5724 -1.8099 24 1 2.4811 4.6033 -0.0009 25 1 5.3622 -0.0272 0.0044 26 1 4.1238 -2.1409 0.0003 27 1 1.1577 -2.9829 1.3111 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306835576.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:01 Heat of formation + Delta-G solvation = 28.445377 kcal Electronic energy + Delta-G solvation = -13613.741525 eV Core-core repulsion = 11360.385891 eV Total energy + Delta-G solvation = -2253.355634 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.82196 -34.99466 -32.37828 -32.17032 -28.48864 -26.81208 -25.25457 -22.65888 -21.05702 -19.78544 -17.39160 -16.67452 -16.43921 -15.24165 -14.86098 -14.49559 -14.01420 -13.43355 -12.92829 -12.63443 -11.95620 -11.86581 -11.78562 -11.57336 -11.33896 -11.06128 -10.89954 -10.67701 -10.20603 -9.97010 -9.83736 -9.40375 -9.15839 -8.39424 -7.71102 -7.50228 -6.76566 -6.66854 -4.36710 1.44992 1.79559 2.15514 2.71827 2.93591 3.08005 3.12071 3.15476 3.63689 3.70668 3.96175 4.36218 5.15763 5.39357 5.49803 5.90820 5.96023 6.11716 6.33401 6.36216 6.59507 6.77254 6.85876 6.95783 7.08173 7.15542 7.41309 7.64400 7.87376 8.40365 8.72333 8.83553 10.27737 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.021418 B = 0.009281 C = 0.006609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.991818 B = 3016.280902 C = 4235.570581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.021 3.979 3 C -0.074 4.074 4 C 0.091 3.909 5 C -0.446 4.446 6 H 0.086 0.914 7 C 0.071 3.929 8 N -0.802 5.802 9 Si 0.908 3.092 10 H -0.261 1.261 11 H -0.274 1.274 12 H -0.275 1.275 13 C -0.347 4.347 14 S 0.056 5.944 15 C -0.122 4.122 16 C -0.111 4.111 17 C -0.078 4.078 18 C -0.143 4.143 19 S -0.137 6.137 20 H 0.065 0.935 21 H 0.099 0.901 22 H 0.074 0.926 23 H 0.277 0.723 24 H 0.153 0.847 25 H 0.118 0.882 26 H 0.125 0.875 27 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.548 -6.785 2.043 7.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.016 3.984 3 C -0.086 4.086 4 C 0.083 3.917 5 C -0.479 4.479 6 H 0.104 0.896 7 C -0.145 4.145 8 N -0.429 5.429 9 Si 0.733 3.267 10 H -0.185 1.185 11 H -0.200 1.200 12 H -0.200 1.200 13 C -0.482 4.482 14 S 0.321 5.679 15 C -0.238 4.238 16 C -0.137 4.137 17 C -0.101 4.101 18 C -0.259 4.259 19 S 0.021 5.979 20 H 0.083 0.917 21 H 0.117 0.883 22 H 0.093 0.907 23 H 0.087 0.913 24 H 0.171 0.829 25 H 0.136 0.864 26 H 0.143 0.857 27 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges 2.478 -6.607 1.669 7.251 hybrid contribution -1.696 0.696 0.989 2.083 sum 0.783 -5.911 2.658 6.528 Atomic orbital electron populations 1.21338 0.90784 1.04415 1.02707 1.19997 0.96181 0.90147 0.92044 1.19646 0.91528 0.94555 1.02855 1.17273 0.94523 0.86043 0.93888 1.19154 0.91784 1.05622 1.31328 0.89591 1.25786 0.99622 0.95810 0.93277 1.69895 1.36723 1.13708 1.22581 0.86254 0.82183 0.79313 0.78965 1.18450 1.19959 1.20015 1.24180 0.92163 1.03042 1.28851 1.81905 1.12174 0.94480 1.79389 1.22852 0.97223 0.98130 1.05587 1.20288 0.98639 0.90058 1.04697 1.20983 0.92435 0.97304 0.99416 1.20537 0.95230 0.93521 1.16629 1.85510 1.75157 1.26289 1.10982 0.91662 0.88283 0.90693 0.91254 0.82922 0.86434 0.85742 0.97419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 8.18 36.01 0.29 -2.28 15 2 C 0.02 0.44 5.95 -103.78 -0.62 -0.18 15 3 C -0.07 -1.73 5.99 -105.21 -0.63 -2.36 15 4 C 0.09 2.35 5.59 -106.18 -0.59 1.76 15 5 C -0.45 -11.30 7.39 -38.07 -0.28 -11.59 15 6 H 0.09 2.05 5.60 -52.49 -0.29 1.76 15 7 C 0.07 1.76 5.34 -17.32 -0.09 1.67 15 8 N -0.80 -20.75 11.28 55.54 0.63 -20.12 15 9 Si 0.91 18.53 29.57 -169.99 -5.03 13.50 15 10 H -0.26 -5.20 7.11 56.52 0.40 -4.80 15 11 H -0.27 -5.57 7.11 56.52 0.40 -5.17 15 12 H -0.27 -5.56 7.11 56.52 0.40 -5.15 15 13 C -0.35 -8.81 9.45 30.08 0.28 -8.52 15 14 S 0.06 1.20 22.96 -107.50 -2.47 -1.27 15 15 C -0.12 -2.65 6.44 -38.55 -0.25 -2.90 15 16 C -0.11 -2.05 10.06 -39.24 -0.39 -2.45 15 17 C -0.08 -1.35 9.77 -39.46 -0.39 -1.73 15 18 C -0.14 -2.66 6.09 -39.22 -0.24 -2.90 15 19 S -0.14 -2.14 23.81 -107.50 -2.56 -4.70 15 20 H 0.06 1.18 7.99 -51.93 -0.41 0.76 15 21 H 0.10 2.04 5.69 -51.93 -0.30 1.75 15 22 H 0.07 1.26 6.46 -51.93 -0.34 0.93 15 23 H 0.28 6.57 8.30 -40.82 -0.34 6.24 15 24 H 0.15 4.10 6.85 -52.49 -0.36 3.74 15 25 H 0.12 1.82 8.06 -52.49 -0.42 1.40 15 26 H 0.12 1.77 8.06 -52.48 -0.42 1.35 15 27 H 0.06 0.89 9.07 97.61 0.89 1.78 15 LS Contribution 255.25 15.07 3.85 3.85 Total: -1.00 -26.36 255.25 -9.28 -35.64 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -0.79 Total: 4.59 kcal Atomic # 6 Polarization: -28.58 SS G_CDS: -2.90 Total: -31.49 kcal Atomic # 7 Polarization: -20.75 SS G_CDS: 0.63 Total: -20.12 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.03 Total: 13.50 kcal Atomic # 16 Polarization: -0.94 SS G_CDS: -5.03 Total: -5.97 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -26.36 -9.28 -35.64 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306835576.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.084 kcal (2) G-P(sol) polarization free energy of solvation -26.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds