Wall clock time and date at job start Mon Mar 30 2020 06:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38792 * 119.89815 * 2 1 4 4 S 1.76184 * 129.90496 * 359.94682 * 3 2 1 5 5 C 1.75435 * 91.57646 * 180.28552 * 4 3 2 6 6 C 1.32297 * 110.89815 * 0.02562 * 5 4 3 7 7 C 1.40386 * 120.76748 * 180.26215 * 3 2 1 8 8 C 1.41640 * 119.63799 * 359.74219 * 7 3 2 9 9 C 1.36197 * 120.92748 * 0.02562 * 8 7 3 10 10 S 1.76204 * 120.23070 * 180.02562 * 9 8 7 11 11 C 1.40356 * 119.88814 * 179.75119 * 2 1 3 12 12 C 1.40742 * 120.54289 * 0.02562 * 11 2 1 13 13 H 1.08001 * 119.99950 * 44.03670 * 12 11 2 14 14 C 1.39898 * 119.99911 * 223.75453 * 12 11 2 15 15 N 1.30916 * 119.99747 * 20.93606 * 14 12 11 16 16 Si 1.86795 * 119.99777 * 200.93250 * 14 12 11 17 17 H 1.48494 * 109.47360 * 60.00075 * 16 14 12 18 18 H 1.48507 * 109.47060 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47224 * 300.00028 * 16 14 12 20 20 H 1.09001 * 109.47212 * 270.25174 * 1 2 3 21 21 H 1.09005 * 109.47187 * 30.24748 * 1 2 3 22 22 H 1.09002 * 109.47838 * 150.25638 * 1 2 3 23 23 H 1.07999 * 124.55147 * 179.97438 * 5 4 3 24 24 H 1.08000 * 122.04270 * 180.02562 * 6 5 4 25 25 H 1.07994 * 119.53677 * 179.97438 * 8 7 3 26 26 H 1.34499 * 103.00009 * 269.97229 * 10 9 8 27 27 H 0.96998 * 119.99344 * 179.79495 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1988 1.2032 0.0000 4 16 1.5905 2.8567 -0.0013 5 6 3.2197 3.5075 -0.0090 6 6 4.1164 2.5347 -0.0109 7 6 3.6025 1.2245 -0.0055 8 6 4.3215 0.0042 -0.0056 9 6 3.6703 -1.1920 -0.0009 10 16 4.5832 -2.6991 -0.0005 11 6 2.2064 -1.2169 0.0053 12 6 1.5119 -2.4410 0.0101 13 1 0.6608 -2.5815 -0.6399 14 6 1.9275 -3.4777 0.8524 15 7 2.6632 -3.2129 1.9024 16 14 1.4327 -5.2398 0.4789 17 1 1.9569 -5.6291 -0.8548 18 1 1.9955 -6.1423 1.5153 19 1 -0.0484 -5.3488 0.4796 20 1 -0.3634 0.0045 1.0277 21 1 -0.3634 0.8878 -0.5177 22 1 -0.3635 -0.8922 -0.5098 23 1 3.4586 4.5607 -0.0126 24 1 5.1779 2.7339 -0.0151 25 1 5.4013 0.0225 -0.0103 26 1 4.7353 -2.9611 -1.3109 27 1 2.9489 -3.9314 2.4880 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306838449.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:01 Heat of formation + Delta-G solvation = 32.334214 kcal Electronic energy + Delta-G solvation = -13681.336511 eV Core-core repulsion = 11428.149510 eV Total energy + Delta-G solvation = -2253.187001 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.27716 -35.11820 -33.03113 -31.44886 -28.88036 -26.34235 -25.01823 -22.45568 -20.64121 -19.58220 -17.64999 -16.41633 -16.05255 -15.46594 -14.76002 -14.13317 -13.67311 -13.12695 -13.08187 -12.41266 -12.00389 -11.90382 -11.74342 -11.40273 -11.33604 -11.23334 -10.83615 -10.63590 -10.23680 -9.88223 -9.61527 -9.54638 -8.96885 -8.47858 -7.28600 -7.00072 -6.80450 -6.52952 -4.54967 1.81661 2.19119 2.53023 2.90682 2.95524 3.01663 3.05548 3.08148 3.41237 3.87388 3.98402 4.57159 5.12713 5.66145 5.82583 6.01003 6.28751 6.41886 6.56618 6.59737 6.62090 6.77733 6.88642 7.02258 7.20533 7.41550 7.47795 7.64159 7.74289 8.17419 8.52084 8.62687 10.05213 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.032504 B = 0.008508 C = 0.007045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.217884 B = 3290.246704 C = 3973.375899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.181 4.181 3 C -0.043 4.043 4 S 0.003 5.997 5 C -0.266 4.266 6 C -0.069 4.069 7 C -0.215 4.215 8 C -0.004 4.004 9 C -0.148 4.148 10 S -0.107 6.107 11 C 0.177 3.823 12 C -0.454 4.454 13 H 0.091 0.909 14 C 0.104 3.896 15 N -0.747 5.747 16 Si 0.906 3.094 17 H -0.262 1.262 18 H -0.274 1.274 19 H -0.267 1.267 20 H 0.051 0.949 21 H 0.038 0.962 22 H 0.062 0.938 23 H 0.146 0.854 24 H 0.121 0.879 25 H 0.107 0.893 26 H 0.022 0.978 27 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.308 2.607 -1.821 3.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.191 4.191 3 C -0.159 4.159 4 S 0.263 5.737 5 C -0.399 4.399 6 C -0.098 4.098 7 C -0.222 4.222 8 C -0.027 4.027 9 C -0.262 4.262 10 S 0.050 5.950 11 C 0.168 3.832 12 C -0.482 4.482 13 H 0.109 0.891 14 C -0.120 4.120 15 N -0.369 5.369 16 Si 0.730 3.270 17 H -0.187 1.187 18 H -0.199 1.199 19 H -0.191 1.191 20 H 0.069 0.931 21 H 0.057 0.943 22 H 0.081 0.919 23 H 0.163 0.837 24 H 0.139 0.861 25 H 0.125 0.875 26 H -0.013 1.013 27 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.416 2.462 -1.367 2.847 hybrid contribution 0.930 -0.514 -1.017 1.471 sum 0.514 1.948 -2.383 3.121 Atomic orbital electron populations 1.20353 0.92366 1.00333 1.00575 1.19139 0.94529 0.89851 1.15630 1.22208 0.95711 0.95011 1.02928 1.83639 1.08692 0.99176 1.82185 1.24457 0.95391 1.01648 1.18382 1.19779 0.99164 0.91499 0.99407 1.17685 0.91876 0.92758 1.19867 1.20710 0.97540 0.90317 0.94169 1.21808 0.95575 0.92607 1.16192 1.85470 1.69658 1.32788 1.07051 1.18391 0.89089 0.91656 0.84081 1.19354 1.12991 0.96086 1.19768 0.89112 1.25607 0.92423 1.00756 0.93251 1.69648 1.22896 1.36119 1.08191 0.86388 0.79469 0.81334 0.79818 1.18651 1.19867 1.19147 0.93052 0.94335 0.91873 0.83651 0.86115 0.87508 1.01348 0.89901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.63 9.46 36.00 0.34 -1.29 15 2 C -0.18 -4.30 5.96 -103.62 -0.62 -4.92 15 3 C -0.04 -0.99 6.28 -38.57 -0.24 -1.24 15 4 S 0.00 0.06 22.51 -107.50 -2.42 -2.36 15 5 C -0.27 -4.82 11.08 28.81 0.32 -4.50 15 6 C -0.07 -1.32 10.11 -40.56 -0.41 -1.73 15 7 C -0.21 -4.80 5.87 -106.85 -0.63 -5.42 15 8 C 0.00 -0.09 9.70 -39.02 -0.38 -0.47 15 9 C -0.15 -3.59 5.86 -37.03 -0.22 -3.81 15 10 S -0.11 -2.41 21.68 -107.50 -2.33 -4.74 15 11 C 0.18 4.41 5.38 -104.86 -0.56 3.85 15 12 C -0.45 -11.01 7.73 -38.02 -0.29 -11.31 15 13 H 0.09 2.10 6.90 -52.49 -0.36 1.74 15 14 C 0.10 2.42 3.74 -17.32 -0.06 2.36 15 15 N -0.75 -18.05 11.05 55.55 0.61 -17.44 15 16 Si 0.91 17.75 29.61 -169.99 -5.03 12.71 15 17 H -0.26 -5.17 7.11 56.52 0.40 -4.77 15 18 H -0.27 -5.23 7.11 56.52 0.40 -4.83 15 19 H -0.27 -5.11 7.11 56.52 0.40 -4.71 15 20 H 0.05 1.04 8.14 -51.93 -0.42 0.61 15 21 H 0.04 0.72 7.54 -51.93 -0.39 0.33 15 22 H 0.06 1.26 6.53 -51.93 -0.34 0.92 15 23 H 0.15 2.17 8.06 -52.49 -0.42 1.75 15 24 H 0.12 1.98 8.06 -52.49 -0.42 1.56 15 25 H 0.11 2.15 8.06 -52.49 -0.42 1.73 15 26 H 0.02 0.46 9.07 97.61 0.89 1.35 15 27 H 0.29 6.45 8.30 -40.82 -0.34 6.11 15 LS Contribution 258.01 15.07 3.89 3.89 Total: -1.00 -25.57 258.01 -9.07 -34.64 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: -1.03 Total: 1.78 kcal Atomic # 6 Polarization: -25.73 SS G_CDS: -2.76 Total: -28.49 kcal Atomic # 7 Polarization: -18.05 SS G_CDS: 0.61 Total: -17.44 kcal Atomic # 14 Polarization: 17.75 SS G_CDS: -5.03 Total: 12.71 kcal Atomic # 16 Polarization: -2.34 SS G_CDS: -4.75 Total: -7.09 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -25.57 -9.07 -34.64 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306838449.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.976 kcal (2) G-P(sol) polarization free energy of solvation -25.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds