Wall clock time and date at job start Mon Mar 30 2020 06:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.31541 * 124.21584 * 2 1 4 4 C 1.45792 * 114.94617 * 179.97438 * 3 2 1 5 5 C 1.40379 * 128.51470 * 180.02562 * 4 3 2 6 6 C 1.39846 * 120.36560 * 180.23247 * 5 4 3 7 7 C 1.40988 * 120.42436 * 179.72316 * 6 5 4 8 8 H 1.07995 * 120.00836 * 154.07573 * 7 6 5 9 9 C 1.39844 * 119.99206 * 334.07763 * 7 6 5 10 10 N 1.30944 * 120.00365 * 343.56186 * 9 7 6 11 11 Si 1.86807 * 119.99781 * 163.56595 * 9 7 6 12 12 H 1.48500 * 109.47056 * 89.99468 * 11 9 7 13 13 H 1.48497 * 109.46830 * 209.99775 * 11 9 7 14 14 H 1.48500 * 109.46916 * 329.99731 * 11 9 7 15 15 C 1.46413 * 119.16083 * 359.53137 * 6 5 4 16 16 S 1.76199 * 120.42875 * 180.23277 * 15 6 5 17 17 C 1.37765 * 119.14605 * 0.42953 * 15 6 5 18 18 C 1.40036 * 120.76767 * 359.80207 * 17 15 6 19 19 S 1.75214 * 124.21338 * 179.97438 * 2 1 3 20 20 H 1.09000 * 109.47200 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.46824 * 299.99955 * 1 2 3 22 22 H 1.09000 * 109.47202 * 59.99637 * 1 2 3 23 23 H 1.08002 * 122.53003 * 359.95572 * 3 2 1 24 24 H 1.07996 * 119.81997 * 359.95670 * 5 4 3 25 25 H 0.97004 * 120.00239 * 185.04707 * 10 9 7 26 26 H 1.34498 * 103.00190 * 270.19530 * 16 15 6 27 27 H 1.07999 * 119.61966 * 179.78289 * 17 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2467 1.0877 0.0000 4 6 3.6856 0.8529 0.0006 5 6 4.7253 1.7961 0.0012 6 6 6.0596 1.3775 -0.0032 7 6 7.1048 2.3238 -0.0084 8 1 8.0712 2.0634 0.3972 9 6 6.8899 3.5997 -0.5389 10 7 5.8550 3.8227 -1.3095 11 14 8.0794 4.9861 -0.1481 12 1 9.1583 5.0149 -1.1681 13 1 7.3519 6.2806 -0.1604 14 1 8.6735 4.7648 1.1947 15 6 6.3576 -0.0560 0.0020 16 16 8.0267 -0.6205 0.0029 17 6 5.3161 -0.9578 0.0021 18 6 3.9869 -0.5171 0.0014 19 16 2.4922 -1.4489 0.0006 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 1.8203 2.0800 -0.0007 24 1 4.4935 2.8509 0.0006 25 1 5.7453 4.6868 -1.7365 26 1 8.3138 -0.7181 -1.3074 27 1 5.5272 -2.0169 0.0024 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306877975.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:28 Heat of formation + Delta-G solvation = 12.662241 kcal Electronic energy + Delta-G solvation = -13295.301669 eV Core-core repulsion = 11041.261627 eV Total energy + Delta-G solvation = -2254.040042 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.64990 -36.81681 -35.28296 -31.95522 -31.45740 -28.10307 -26.98214 -23.62491 -22.66525 -21.15741 -19.20799 -18.60676 -17.67437 -17.03496 -16.15015 -15.97715 -15.37522 -14.82655 -14.59638 -14.26535 -14.07001 -13.65620 -13.41666 -13.07569 -12.94143 -12.77356 -12.47051 -12.16500 -11.86855 -11.51535 -11.39764 -11.22978 -10.91257 -10.16215 -9.09397 -8.82750 -8.72481 -8.51071 -6.41543 -0.07892 0.78865 0.85185 1.06976 1.31425 1.38078 1.42815 1.53946 1.60166 2.14705 2.17053 2.59112 3.47423 3.87904 4.12037 4.46114 4.60118 4.75080 4.77879 4.87563 5.07235 5.12166 5.19342 5.23837 5.39906 5.50823 5.76554 5.92618 6.05358 6.49040 6.73486 6.77334 8.16751 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.023523 B = 0.007960 C = 0.006061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.055422 B = 3516.531649 C = 4618.800661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.143 4.143 3 C -0.154 4.154 4 C -0.040 4.040 5 C -0.179 4.179 6 C 0.113 3.887 7 C -0.457 4.457 8 H 0.101 0.899 9 C 0.034 3.966 10 N -0.809 5.809 11 Si 0.987 3.013 12 H -0.260 1.260 13 H -0.265 1.265 14 H -0.253 1.253 15 C -0.219 4.219 16 S -0.115 6.115 17 C -0.005 4.005 18 C -0.271 4.271 19 S 0.034 5.966 20 H 0.080 0.920 21 H 0.091 0.909 22 H 0.088 0.912 23 H 0.144 0.856 24 H 0.112 0.888 25 H 0.294 0.706 26 H 0.048 0.952 27 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.487 -2.297 1.366 6.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.258 4.258 3 C -0.185 4.185 4 C -0.046 4.046 5 C -0.202 4.202 6 C 0.106 3.894 7 C -0.485 4.485 8 H 0.119 0.881 9 C -0.183 4.183 10 N -0.433 5.433 11 Si 0.806 3.194 12 H -0.185 1.185 13 H -0.189 1.189 14 H -0.176 1.176 15 C -0.334 4.334 16 S 0.043 5.957 17 C -0.030 4.030 18 C -0.386 4.386 19 S 0.293 5.707 20 H 0.099 0.901 21 H 0.109 0.891 22 H 0.107 0.893 23 H 0.161 0.839 24 H 0.130 0.870 25 H 0.105 0.895 26 H 0.012 0.988 27 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.125 -3.920 1.487 6.622 hybrid contribution 0.133 2.399 -1.201 2.686 sum -4.992 -1.521 0.286 5.227 Atomic orbital electron populations 1.20509 0.85014 1.04027 1.04180 1.24152 1.01280 0.95054 1.05327 1.21020 0.91052 0.99913 1.06512 1.19577 0.93671 0.92630 0.98736 1.21042 0.91012 0.97677 1.10518 1.18851 0.93192 0.90361 0.87034 1.20077 0.99309 0.95615 1.33479 0.88132 1.26958 0.97433 1.01759 0.92177 1.69900 1.27353 1.25903 1.20155 0.85109 0.77945 0.75852 0.80448 1.18494 1.18942 1.17613 1.22135 0.93716 0.95302 1.22296 1.84714 1.13958 1.86792 1.10284 1.20518 0.89446 0.98074 0.94970 1.22096 0.96732 0.96059 1.23750 1.83137 0.95038 1.08844 1.83724 0.90146 0.89056 0.89314 0.83856 0.86998 0.89492 0.98779 0.85781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.76 10.32 71.24 0.73 -1.03 15 2 C -0.14 -4.80 6.36 25.13 0.16 -4.64 15 3 C -0.15 -6.10 10.19 23.67 0.24 -5.86 15 4 C -0.04 -1.92 6.01 -20.31 -0.12 -2.05 15 5 C -0.18 -9.42 8.73 23.18 0.20 -9.22 15 6 C 0.11 6.00 5.70 -20.09 -0.11 5.88 15 7 C -0.46 -23.52 8.53 23.33 0.20 -23.32 15 8 H 0.10 5.02 7.15 -2.91 -0.02 5.00 15 9 C 0.03 1.64 5.15 85.21 0.44 2.08 15 10 N -0.81 -40.33 10.97 21.81 0.24 -40.09 15 11 Si 0.99 36.19 29.59 68.60 2.03 38.22 15 12 H -0.26 -9.21 7.11 99.48 0.71 -8.51 15 13 H -0.27 -9.24 7.11 99.48 0.71 -8.53 15 14 H -0.25 -9.11 7.11 99.48 0.71 -8.40 15 15 C -0.22 -10.78 6.31 24.29 0.15 -10.62 15 16 S -0.11 -4.86 24.52 -56.49 -1.39 -6.24 15 17 C -0.01 -0.24 9.78 22.59 0.22 -0.02 15 18 C -0.27 -12.36 6.47 23.20 0.15 -12.21 15 19 S 0.03 1.23 23.19 -56.49 -1.31 -0.08 15 20 H 0.08 1.55 8.13 -2.39 -0.02 1.53 15 21 H 0.09 1.75 8.14 -2.38 -0.02 1.73 15 22 H 0.09 1.74 8.14 -2.39 -0.02 1.72 15 23 H 0.14 5.09 8.06 -2.91 -0.02 5.07 15 24 H 0.11 6.07 6.18 -2.91 -0.02 6.05 15 25 H 0.29 13.14 8.31 -92.71 -0.77 12.37 15 26 H 0.05 1.97 9.07 73.35 0.67 2.64 15 27 H 0.12 5.05 8.06 -2.91 -0.02 5.02 15 Total: -1.00 -57.22 264.39 3.71 -53.51 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 1.87 Total: 15.69 kcal Atomic # 6 Polarization: -63.26 SS G_CDS: 2.26 Total: -61.00 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 0.24 Total: -40.09 kcal Atomic # 14 Polarization: 36.19 SS G_CDS: 2.03 Total: 38.22 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -2.69 Total: -6.33 kcal Total: -57.22 3.71 -53.51 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306877975.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.169 kcal (2) G-P(sol) polarization free energy of solvation -57.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds