Wall clock time and date at job start Mon Mar 30 2020 06:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38833 * 120.01033 * 2 1 4 4 S 1.76040 * 130.34695 * 359.96110 * 3 2 1 5 5 C 1.75458 * 91.64958 * 180.02562 * 4 3 2 6 6 C 1.33379 * 110.78846 * 359.97438 * 5 4 3 7 7 S 1.76199 * 122.17756 * 179.97438 * 6 5 4 8 8 C 1.40347 * 120.13271 * 179.97438 * 3 2 1 9 9 C 1.41960 * 119.03679 * 0.02562 * 8 3 2 10 10 C 1.35191 * 120.88234 * 359.69829 * 9 8 3 11 11 C 1.40408 * 120.00278 * 179.97438 * 2 1 3 12 12 C 1.40970 * 120.20706 * 359.97438 * 11 2 1 13 13 H 1.08000 * 119.99481 * 26.84262 * 12 11 2 14 14 C 1.39718 * 120.00190 * 206.84613 * 12 11 2 15 15 N 1.30972 * 120.00154 * 16.50149 * 14 12 11 16 16 Si 1.86806 * 119.99971 * 196.50250 * 14 12 11 17 17 H 1.48492 * 109.47220 * 265.19662 * 16 14 12 18 18 H 1.48500 * 109.46983 * 25.19437 * 16 14 12 19 19 H 1.48499 * 109.47034 * 145.19166 * 16 14 12 20 20 H 1.09000 * 109.46776 * 270.01976 * 1 2 3 21 21 H 1.09002 * 109.47137 * 30.01612 * 1 2 3 22 22 H 1.09000 * 109.47888 * 150.01839 * 1 2 3 23 23 H 1.08001 * 124.60551 * 180.02562 * 5 4 3 24 24 H 1.34502 * 103.00117 * 90.02774 * 7 6 5 25 25 H 1.08006 * 119.56151 * 180.02562 * 9 8 3 26 26 H 1.07995 * 119.81418 * 180.27849 * 10 9 8 27 27 H 0.97002 * 119.99778 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2013 1.2022 0.0000 4 16 1.6096 2.8602 -0.0009 5 6 3.2444 3.4973 -0.0010 6 6 4.1383 2.5074 0.0002 7 16 5.8740 2.8104 -0.0001 8 6 3.6048 1.2052 0.0005 9 6 4.2965 -0.0345 0.0005 10 6 3.6214 -1.2058 0.0061 11 6 2.2091 -1.2159 0.0005 12 6 1.5087 -2.4393 0.0016 13 1 0.5160 -2.4936 -0.4203 14 6 2.0987 -3.5816 0.5486 15 7 3.1382 -3.4681 1.3373 16 14 1.4050 -5.2709 0.1550 17 1 0.4557 -5.6771 1.2222 18 1 0.6939 -5.2227 -1.1478 19 1 2.5138 -6.2556 0.0776 20 1 -0.3633 0.0004 1.0277 21 1 -0.3633 0.8898 -0.5141 22 1 -0.3635 -0.8901 -0.5135 23 1 3.4931 4.5483 -0.0010 24 1 6.1722 2.8634 1.3104 25 1 5.3765 -0.0421 0.0014 26 1 4.1651 -2.1389 0.0106 27 1 3.5475 -4.2612 1.7173 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306879767.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:08 Heat of formation + Delta-G solvation = 25.963994 kcal Electronic energy + Delta-G solvation = -13479.015992 eV Core-core repulsion = 11225.552757 eV Total energy + Delta-G solvation = -2253.463235 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.41817 -35.29363 -33.14008 -31.35994 -28.94203 -26.29913 -25.18347 -22.57046 -20.39979 -20.03734 -17.69480 -16.76044 -16.13105 -15.56814 -14.71120 -14.26699 -13.76224 -13.39917 -13.02945 -12.43113 -12.23486 -11.93274 -11.65268 -11.37069 -11.28734 -11.19387 -10.85279 -10.70590 -10.38731 -9.89539 -9.78548 -9.46491 -9.24191 -8.44063 -7.70715 -7.41428 -7.13244 -6.76915 -4.56526 1.48965 1.91339 2.54704 2.69385 2.74613 2.90737 2.93539 2.98785 3.25520 3.58825 3.72327 4.38947 5.34565 5.62382 6.02534 6.17657 6.38452 6.45388 6.57420 6.62740 6.75888 6.79411 6.88888 7.04391 7.30316 7.56346 7.65324 7.77810 7.94282 8.29771 8.56106 8.64012 9.86158 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.030817 B = 0.007232 C = 0.005969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.360580 B = 3870.512834 C = 4690.025663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.193 4.193 3 C -0.062 4.062 4 S 0.037 5.963 5 C -0.220 4.220 6 C -0.048 4.048 7 S -0.130 6.130 8 C -0.185 4.185 9 C -0.069 4.069 10 C -0.136 4.136 11 C 0.136 3.864 12 C -0.433 4.433 13 H 0.090 0.910 14 C 0.073 3.927 15 N -0.778 5.778 16 Si 0.914 3.086 17 H -0.267 1.267 18 H -0.257 1.257 19 H -0.272 1.272 20 H 0.047 0.953 21 H 0.037 0.963 22 H 0.062 0.938 23 H 0.156 0.844 24 H 0.067 0.933 25 H 0.104 0.896 26 H 0.125 0.875 27 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.202 3.914 -1.164 4.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.202 4.202 3 C -0.178 4.178 4 S 0.298 5.702 5 C -0.356 4.356 6 C -0.173 4.173 7 S 0.024 5.976 8 C -0.192 4.192 9 C -0.089 4.089 10 C -0.155 4.155 11 C 0.130 3.870 12 C -0.462 4.462 13 H 0.108 0.892 14 C -0.148 4.148 15 N -0.402 5.402 16 Si 0.737 3.263 17 H -0.193 1.193 18 H -0.180 1.180 19 H -0.197 1.197 20 H 0.066 0.934 21 H 0.056 0.944 22 H 0.080 0.920 23 H 0.173 0.827 24 H 0.031 0.969 25 H 0.122 0.878 26 H 0.143 0.857 27 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.510 4.690 -1.233 4.876 hybrid contribution 0.396 -1.464 1.074 1.858 sum -0.115 3.226 -0.159 3.232 Atomic orbital electron populations 1.20355 0.92868 1.00325 1.00217 1.18978 0.94183 0.90056 1.16981 1.22007 0.95471 0.94791 1.05580 1.83581 1.06880 0.99645 1.80133 1.25173 0.95245 1.01539 1.13692 1.19826 0.93881 0.94742 1.08827 1.85467 1.05789 1.95195 1.11121 1.17618 0.91686 0.92186 1.17726 1.20426 0.98042 0.90750 0.99718 1.20972 0.94615 0.96878 1.03061 1.17411 0.91696 0.91273 0.86636 1.19683 1.02611 0.92280 1.31582 0.89217 1.26034 0.94087 1.02002 0.92659 1.69872 1.17661 1.32703 1.19917 0.86182 0.79610 0.80094 0.80372 1.19251 1.18049 1.19717 0.93433 0.94406 0.91963 0.82690 0.96908 0.87829 0.85733 0.90216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.65 9.47 36.00 0.34 -1.30 15 2 C -0.19 -4.57 5.96 -103.59 -0.62 -5.19 15 3 C -0.06 -1.43 6.28 -38.57 -0.24 -1.67 15 4 S 0.04 0.70 22.56 -107.50 -2.43 -1.72 15 5 C -0.22 -4.10 10.90 29.03 0.32 -3.79 15 6 C -0.05 -0.98 6.05 -40.34 -0.24 -1.22 15 7 S -0.13 -2.28 25.38 -107.50 -2.73 -5.01 15 8 C -0.19 -4.27 5.88 -106.74 -0.63 -4.90 15 9 C -0.07 -1.60 9.67 -39.24 -0.38 -1.98 15 10 C -0.14 -3.34 8.56 -39.53 -0.34 -3.68 15 11 C 0.14 3.39 5.54 -106.91 -0.59 2.80 15 12 C -0.43 -10.41 8.41 -37.99 -0.32 -10.73 15 13 H 0.09 2.04 6.25 -52.49 -0.33 1.71 15 14 C 0.07 1.65 5.14 -17.37 -0.09 1.57 15 15 N -0.78 -18.44 11.00 55.54 0.61 -17.83 15 16 Si 0.91 16.99 29.59 -169.99 -5.03 11.96 15 17 H -0.27 -4.94 7.11 56.52 0.40 -4.53 15 18 H -0.26 -4.74 7.11 56.52 0.40 -4.34 15 19 H -0.27 -4.98 7.11 56.52 0.40 -4.58 15 20 H 0.05 0.94 8.14 -51.93 -0.42 0.51 15 21 H 0.04 0.70 7.58 -51.93 -0.39 0.31 15 22 H 0.06 1.22 6.24 -51.93 -0.32 0.90 15 23 H 0.16 2.43 8.06 -52.49 -0.42 2.01 15 24 H 0.07 1.10 9.07 97.61 0.89 1.99 15 25 H 0.10 2.22 7.77 -52.48 -0.41 1.81 15 26 H 0.12 3.08 6.24 -52.49 -0.33 2.75 15 27 H 0.29 6.14 8.30 -40.82 -0.34 5.80 15 LS Contribution 259.40 15.07 3.91 3.91 Total: -1.00 -25.12 259.40 -9.33 -34.45 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -0.88 Total: 4.34 kcal Atomic # 6 Polarization: -27.31 SS G_CDS: -2.79 Total: -30.10 kcal Atomic # 7 Polarization: -18.44 SS G_CDS: 0.61 Total: -17.83 kcal Atomic # 14 Polarization: 16.99 SS G_CDS: -5.03 Total: 11.96 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -5.15 Total: -6.73 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -25.12 -9.33 -34.45 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306879767.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.419 kcal (2) G-P(sol) polarization free energy of solvation -25.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds