Wall clock time and date at job start Mon Mar 30 2020 06:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.31544 * 122.52639 * 2 1 4 4 S 1.75217 * 111.56974 * 180.02562 * 3 2 1 5 5 C 1.76131 * 92.26954 * 0.02562 * 4 3 2 6 6 C 1.40039 * 129.70974 * 179.97438 * 5 4 3 7 7 C 1.37766 * 120.76959 * 179.70303 * 6 5 4 8 8 S 1.76200 * 120.43019 * 180.28767 * 7 6 5 9 9 C 1.46413 * 119.14098 * 0.56485 * 7 6 5 10 10 C 1.40988 * 120.41766 * 179.71407 * 9 7 6 11 11 H 1.07999 * 120.00157 * 24.89407 * 10 9 7 12 12 C 1.39841 * 119.99693 * 204.89966 * 10 9 7 13 13 N 1.30946 * 120.00400 * 26.64438 * 12 10 9 14 14 Si 1.86810 * 119.99898 * 206.64300 * 12 10 9 15 15 H 1.48500 * 109.47086 * 179.97438 * 14 12 10 16 16 H 1.48500 * 109.46908 * 300.00069 * 14 12 10 17 17 H 1.48495 * 109.46760 * 59.99685 * 14 12 10 18 18 C 1.39843 * 119.16150 * 359.44696 * 9 7 6 19 19 C 1.40271 * 109.54029 * 359.97438 * 5 4 3 20 20 H 1.08999 * 109.47412 * 269.97832 * 1 2 3 21 21 H 1.09002 * 109.46959 * 29.98038 * 1 2 3 22 22 H 1.09003 * 109.46757 * 149.97694 * 1 2 3 23 23 H 1.07999 * 124.21922 * 0.05322 * 3 2 1 24 24 H 1.08001 * 119.61942 * 0.02562 * 6 5 4 25 25 H 1.34501 * 102.99780 * 266.88409 * 8 7 6 26 26 H 0.97001 * 120.00078 * 5.78601 * 13 12 10 27 27 H 1.08008 * 119.81644 * 180.25229 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2143 1.1091 0.0000 4 16 3.9345 0.7761 -0.0007 5 6 3.6685 -0.9650 -0.0018 6 6 4.5983 -2.0122 -0.0033 7 6 4.1811 -3.3252 0.0022 8 16 5.3589 -4.6357 0.0079 9 6 2.7465 -3.6174 -0.0030 10 6 2.2898 -4.9513 -0.0037 11 1 2.9160 -5.7367 0.3930 12 6 1.0259 -5.2573 -0.5182 13 7 0.4888 -4.4911 -1.4342 14 14 0.1039 -6.7592 0.1014 15 1 -1.2028 -6.8607 -0.5968 16 1 0.9063 -7.9790 -0.1691 17 1 -0.1250 -6.6313 1.5630 18 6 1.8350 -2.5569 -0.0016 19 6 2.2909 -1.2291 -0.0010 20 1 -0.3634 -0.0004 1.0276 21 1 -0.3633 0.8902 -0.5135 22 1 -0.3633 -0.8898 -0.5142 23 1 1.7879 2.1014 0.0008 24 1 5.6548 -1.7879 -0.0035 25 1 5.5083 -4.9139 -1.2995 26 1 1.0001 -3.7608 -1.8165 27 1 0.7743 -2.7604 -0.0013 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306889976.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:47 Heat of formation + Delta-G solvation = 18.481041 kcal Electronic energy + Delta-G solvation = -13520.945862 eV Core-core repulsion = 11267.158141 eV Total energy + Delta-G solvation = -2253.787720 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.27999 -35.48404 -33.67033 -29.75330 -28.98840 -27.55475 -25.20419 -22.14508 -21.29548 -19.14506 -17.87480 -17.08373 -16.36008 -14.82305 -14.70105 -14.21137 -13.91702 -13.45848 -13.10248 -12.85670 -12.34119 -12.14657 -11.91285 -11.64172 -11.37895 -11.10154 -10.71309 -10.53409 -10.18754 -10.00048 -9.73291 -9.58859 -9.20888 -8.51811 -7.69389 -7.41436 -7.17517 -6.94638 -4.67532 1.49819 2.40588 2.47237 2.64396 2.90065 3.04757 3.07823 3.19190 3.26572 3.78309 3.84170 4.26287 5.11343 5.29298 5.53373 5.81566 5.87899 5.99964 6.16812 6.45305 6.47478 6.61662 6.82676 7.00177 7.09030 7.28943 7.39244 7.58453 7.76591 7.89203 8.40040 8.53638 9.72741 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.020844 B = 0.009288 C = 0.006610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.970139 B = 3013.814926 C = 4234.761081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.090 4.090 3 C -0.196 4.196 4 S -0.003 6.003 5 C -0.255 4.255 6 C 0.011 3.989 7 C -0.195 4.195 8 S -0.138 6.138 9 C 0.120 3.880 10 C -0.480 4.480 11 H 0.101 0.899 12 C 0.036 3.964 13 N -0.774 5.774 14 Si 1.067 2.933 15 H -0.272 1.272 16 H -0.271 1.271 17 H -0.270 1.270 18 C -0.204 4.204 19 C -0.009 4.009 20 H 0.065 0.935 21 H 0.059 0.941 22 H 0.070 0.930 23 H 0.151 0.849 24 H 0.107 0.893 25 H 0.047 0.953 26 H 0.302 0.698 27 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.005 3.686 1.524 3.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.103 4.103 3 C -0.329 4.329 4 S 0.256 5.744 5 C -0.370 4.370 6 C -0.014 4.014 7 C -0.310 4.310 8 S 0.019 5.981 9 C 0.112 3.888 10 C -0.507 4.507 11 H 0.119 0.881 12 C -0.189 4.189 13 N -0.395 5.395 14 Si 0.889 3.111 15 H -0.197 1.197 16 H -0.196 1.196 17 H -0.195 1.195 18 C -0.227 4.227 19 C -0.015 4.015 20 H 0.084 0.916 21 H 0.078 0.922 22 H 0.089 0.911 23 H 0.168 0.832 24 H 0.125 0.875 25 H 0.011 0.989 26 H 0.115 0.885 27 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.462 3.168 1.556 3.559 hybrid contribution -0.341 0.818 -0.993 1.331 sum 0.121 3.986 0.564 4.027 Atomic orbital electron populations 1.20492 0.90515 1.02387 1.01869 1.19874 0.96335 0.91839 1.02268 1.24443 0.96634 1.01077 1.10788 1.83363 1.05128 1.01768 1.84110 1.21579 0.96027 0.94189 1.25250 1.20290 0.96525 0.90184 0.94363 1.21741 0.94647 0.92417 1.22201 1.85008 1.54073 1.48125 1.10870 1.18524 0.89035 0.93249 0.87968 1.20888 1.02162 0.94455 1.33153 0.88116 1.27302 0.95309 1.03089 0.93159 1.70514 1.40151 1.13548 1.15312 0.83605 0.76456 0.73623 0.77458 1.19675 1.19621 1.19465 1.20853 0.98724 0.89247 1.13890 1.18949 0.90788 0.93020 0.98727 0.91588 0.92182 0.91128 0.83165 0.87512 0.98862 0.88452 0.86697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.52 10.00 36.01 0.36 -1.16 15 2 C -0.09 -1.75 5.97 -103.46 -0.62 -2.37 15 3 C -0.20 -3.49 10.72 28.88 0.31 -3.18 15 4 S 0.00 -0.07 23.23 -107.50 -2.50 -2.56 15 5 C -0.25 -5.73 6.47 -38.14 -0.25 -5.98 15 6 C 0.01 0.26 9.78 -39.08 -0.38 -0.13 15 7 C -0.19 -4.63 6.32 -36.47 -0.23 -4.86 15 8 S -0.14 -2.91 24.51 -107.50 -2.63 -5.54 15 9 C 0.12 3.01 5.44 -104.97 -0.57 2.44 15 10 C -0.48 -11.84 8.47 -37.94 -0.32 -12.16 15 11 H 0.10 2.45 7.20 -52.49 -0.38 2.07 15 12 C 0.04 0.84 4.90 -17.33 -0.08 0.76 15 13 N -0.77 -19.05 12.33 55.54 0.68 -18.36 15 14 Si 1.07 20.00 30.01 -169.99 -5.10 14.90 15 15 H -0.27 -5.08 7.11 56.52 0.40 -4.68 15 16 H -0.27 -4.85 7.11 56.52 0.40 -4.44 15 17 H -0.27 -4.90 7.11 56.52 0.40 -4.50 15 18 C -0.20 -4.98 7.69 -38.17 -0.29 -5.27 15 19 C -0.01 -0.21 6.00 -105.31 -0.63 -0.84 15 20 H 0.07 0.99 8.14 -51.93 -0.42 0.57 15 21 H 0.06 0.82 8.11 -51.93 -0.42 0.39 15 22 H 0.07 1.22 7.50 -51.93 -0.39 0.83 15 23 H 0.15 2.16 8.06 -52.49 -0.42 1.74 15 24 H 0.11 2.17 8.06 -52.49 -0.42 1.75 15 25 H 0.05 0.96 9.07 97.61 0.89 1.85 15 26 H 0.30 7.71 6.78 -40.82 -0.28 7.43 15 27 H 0.12 2.84 5.97 -52.48 -0.31 2.52 15 LS Contribution 262.05 15.07 3.95 3.95 Total: -1.00 -25.57 262.05 -9.27 -34.83 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -0.96 Total: 5.54 kcal Atomic # 6 Polarization: -30.04 SS G_CDS: -2.71 Total: -32.75 kcal Atomic # 7 Polarization: -19.05 SS G_CDS: 0.68 Total: -18.36 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.10 Total: 14.90 kcal Atomic # 16 Polarization: -2.97 SS G_CDS: -5.13 Total: -8.11 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -25.57 -9.27 -34.83 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306889976.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.316 kcal (2) G-P(sol) polarization free energy of solvation -25.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds