Wall clock time and date at job start Mon Mar 30 2020 06:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.31544 * 122.52639 * 2 1 4 4 S 1.75217 * 111.56974 * 180.02562 * 3 2 1 5 5 C 1.76131 * 92.26954 * 0.02562 * 4 3 2 6 6 C 1.40039 * 129.70974 * 179.97438 * 5 4 3 7 7 C 1.37766 * 120.76959 * 179.70303 * 6 5 4 8 8 S 1.76200 * 120.43019 * 180.28767 * 7 6 5 9 9 C 1.46413 * 119.14098 * 0.56485 * 7 6 5 10 10 C 1.40988 * 120.41766 * 179.71407 * 9 7 6 11 11 H 1.07999 * 120.00157 * 24.89407 * 10 9 7 12 12 C 1.39841 * 119.99693 * 204.89966 * 10 9 7 13 13 N 1.30946 * 120.00400 * 26.64438 * 12 10 9 14 14 Si 1.86810 * 119.99898 * 206.64300 * 12 10 9 15 15 H 1.48500 * 109.47086 * 179.97438 * 14 12 10 16 16 H 1.48500 * 109.46908 * 300.00069 * 14 12 10 17 17 H 1.48495 * 109.46760 * 59.99685 * 14 12 10 18 18 C 1.39843 * 119.16150 * 359.44696 * 9 7 6 19 19 C 1.40271 * 109.54029 * 359.97438 * 5 4 3 20 20 H 1.08999 * 109.47412 * 269.97832 * 1 2 3 21 21 H 1.09002 * 109.46959 * 29.98038 * 1 2 3 22 22 H 1.09003 * 109.46757 * 149.97694 * 1 2 3 23 23 H 1.07999 * 124.21922 * 0.05322 * 3 2 1 24 24 H 1.08001 * 119.61942 * 0.02562 * 6 5 4 25 25 H 1.34501 * 102.99780 * 266.88409 * 8 7 6 26 26 H 0.97001 * 120.00078 * 5.78601 * 13 12 10 27 27 H 1.08008 * 119.81644 * 180.25229 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2143 1.1091 0.0000 4 16 3.9345 0.7761 -0.0007 5 6 3.6685 -0.9650 -0.0018 6 6 4.5983 -2.0122 -0.0033 7 6 4.1811 -3.3252 0.0022 8 16 5.3589 -4.6357 0.0079 9 6 2.7465 -3.6174 -0.0030 10 6 2.2898 -4.9513 -0.0037 11 1 2.9160 -5.7367 0.3930 12 6 1.0259 -5.2573 -0.5182 13 7 0.4888 -4.4911 -1.4342 14 14 0.1039 -6.7592 0.1014 15 1 -1.2028 -6.8607 -0.5968 16 1 0.9063 -7.9790 -0.1691 17 1 -0.1250 -6.6313 1.5630 18 6 1.8350 -2.5569 -0.0016 19 6 2.2909 -1.2291 -0.0010 20 1 -0.3634 -0.0004 1.0276 21 1 -0.3633 0.8902 -0.5135 22 1 -0.3633 -0.8898 -0.5142 23 1 1.7879 2.1014 0.0008 24 1 5.6548 -1.7879 -0.0035 25 1 5.5083 -4.9139 -1.2995 26 1 1.0001 -3.7608 -1.8165 27 1 0.7743 -2.7604 -0.0013 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306889976.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:46 Heat of formation + Delta-G solvation = 6.886481 kcal Electronic energy + Delta-G solvation = -13521.448639 eV Core-core repulsion = 11267.158141 eV Total energy + Delta-G solvation = -2254.290498 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.97203 -37.14324 -35.37500 -31.50993 -30.67222 -29.02210 -26.95210 -23.82992 -23.05990 -20.76852 -19.57741 -18.77362 -17.98055 -16.54427 -16.41011 -15.83172 -15.49615 -14.93418 -14.63570 -14.50971 -14.00812 -13.77841 -13.54383 -13.17575 -12.93255 -12.58230 -12.30410 -12.00433 -11.78181 -11.65727 -11.42977 -11.28579 -10.92239 -10.24647 -9.49764 -9.18722 -8.86306 -8.55662 -6.52461 -0.17199 0.68193 0.81506 1.03195 1.28495 1.40450 1.52031 1.65418 1.81529 2.05609 2.28041 2.51919 3.29022 3.83623 3.96570 4.29937 4.54204 4.65092 4.73820 4.79441 4.89001 5.08709 5.14210 5.28335 5.36550 5.47151 5.62131 5.80138 5.94405 6.08296 6.55785 6.72109 7.85821 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.020844 B = 0.009288 C = 0.006610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.970139 B = 3013.814926 C = 4234.761081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.119 4.119 3 C -0.177 4.177 4 S 0.037 5.963 5 C -0.279 4.279 6 C 0.006 3.994 7 C -0.221 4.221 8 S -0.113 6.113 9 C 0.096 3.904 10 C -0.508 4.508 11 H 0.098 0.902 12 C 0.006 3.994 13 N -0.793 5.793 14 Si 1.114 2.886 15 H -0.270 1.270 16 H -0.255 1.255 17 H -0.260 1.260 18 C -0.227 4.227 19 C -0.022 4.022 20 H 0.076 0.924 21 H 0.092 0.908 22 H 0.048 0.952 23 H 0.195 0.805 24 H 0.127 0.873 25 H 0.047 0.953 26 H 0.285 0.715 27 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.015 5.050 1.966 5.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C -0.310 4.310 4 S 0.297 5.703 5 C -0.394 4.394 6 C -0.019 4.019 7 C -0.336 4.336 8 S 0.045 5.955 9 C 0.089 3.911 10 C -0.535 4.535 11 H 0.116 0.884 12 C -0.213 4.213 13 N -0.414 5.414 14 Si 0.930 3.070 15 H -0.195 1.195 16 H -0.179 1.179 17 H -0.185 1.185 18 C -0.250 4.250 19 C -0.028 4.028 20 H 0.095 0.905 21 H 0.111 0.889 22 H 0.067 0.933 23 H 0.212 0.788 24 H 0.145 0.855 25 H 0.012 0.988 26 H 0.098 0.902 27 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.495 4.550 1.998 4.994 hybrid contribution -0.213 0.598 -1.126 1.293 sum 0.281 5.148 0.871 5.229 Atomic orbital electron populations 1.20493 0.88472 1.02908 1.02743 1.20086 0.97996 0.90862 1.04230 1.24967 0.95890 1.02464 1.07699 1.83200 1.05864 0.97932 1.83257 1.22100 0.96105 0.96945 1.24272 1.20574 0.97655 0.89980 0.93648 1.22089 0.94925 0.94009 1.22537 1.84756 1.52593 1.47489 1.10708 1.18879 0.90087 0.93862 0.88260 1.21010 1.03298 0.94403 1.34777 0.88427 1.28597 0.95712 1.04780 0.92179 1.70618 1.40014 1.14054 1.16708 0.83038 0.75524 0.71035 0.77356 1.19485 1.17883 1.18471 1.20797 0.98055 0.90275 1.15898 1.19414 0.91938 0.93808 0.97665 0.90513 0.88948 0.93270 0.78840 0.85540 0.98831 0.90249 0.88057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.69 10.00 71.24 0.71 -1.98 15 2 C -0.12 -4.44 5.97 -18.47 -0.11 -4.55 15 3 C -0.18 -5.67 10.72 67.26 0.72 -4.95 15 4 S 0.04 1.30 23.23 -56.49 -1.31 -0.01 15 5 C -0.28 -12.33 6.47 23.20 0.15 -12.18 15 6 C 0.01 0.27 9.78 22.59 0.22 0.50 15 7 C -0.22 -10.63 6.32 24.29 0.15 -10.48 15 8 S -0.11 -4.73 24.51 -56.49 -1.38 -6.12 15 9 C 0.10 5.01 5.44 -20.09 -0.11 4.90 15 10 C -0.51 -25.87 8.47 23.33 0.20 -25.67 15 11 H 0.10 4.87 7.20 -2.91 -0.02 4.85 15 12 C 0.01 0.31 4.90 85.21 0.42 0.73 15 13 N -0.79 -40.48 12.33 21.81 0.27 -40.21 15 14 Si 1.11 40.49 30.01 68.60 2.06 42.55 15 15 H -0.27 -9.66 7.11 99.48 0.71 -8.95 15 16 H -0.25 -8.52 7.11 99.48 0.71 -7.81 15 17 H -0.26 -8.99 7.11 99.48 0.71 -8.28 15 18 C -0.23 -11.50 7.69 23.18 0.18 -11.32 15 19 C -0.02 -1.01 6.00 -20.31 -0.12 -1.13 15 20 H 0.08 2.17 8.14 -2.39 -0.02 2.15 15 21 H 0.09 2.21 8.11 -2.39 -0.02 2.19 15 22 H 0.05 1.71 7.50 -2.39 -0.02 1.70 15 23 H 0.19 4.48 8.06 -2.91 -0.02 4.46 15 24 H 0.13 5.01 8.06 -2.91 -0.02 4.99 15 25 H 0.05 1.94 9.07 73.35 0.67 2.61 15 26 H 0.29 15.37 6.78 -92.71 -0.63 14.74 15 27 H 0.10 5.28 5.97 -2.91 -0.02 5.26 15 Total: -1.00 -56.09 262.05 4.06 -52.03 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 2.02 Total: 17.90 kcal Atomic # 6 Polarization: -68.55 SS G_CDS: 2.41 Total: -66.14 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: 0.27 Total: -40.21 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.06 Total: 42.55 kcal Atomic # 16 Polarization: -3.43 SS G_CDS: -2.70 Total: -6.13 kcal Total: -56.09 4.06 -52.03 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306889976.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.917 kcal (2) G-P(sol) polarization free energy of solvation -56.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds