Wall clock time and date at job start Mon Mar 30 2020 06:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38448 * 119.92169 * 2 1 4 4 C 1.37707 * 120.28541 * 180.02562 * 3 2 1 5 5 C 1.39926 * 120.55266 * 359.97438 * 4 3 2 6 6 S 1.75802 * 130.15114 * 180.29227 * 5 4 3 7 7 C 1.69985 * 93.21469 * 180.02562 * 6 5 4 8 8 C 1.36515 * 111.91890 * 359.69795 * 7 6 5 9 9 C 1.40838 * 123.30235 * 180.23406 * 8 7 6 10 10 H 1.07998 * 120.00033 * 208.36200 * 9 8 7 11 11 C 1.39632 * 119.99990 * 28.36049 * 9 8 7 12 12 N 1.31113 * 120.00317 * 9.14567 * 11 9 8 13 13 Si 1.86807 * 119.99831 * 189.14239 * 11 9 8 14 14 H 1.48496 * 109.46763 * 90.00113 * 13 11 9 15 15 H 1.48504 * 109.46891 * 209.99891 * 13 11 9 16 16 H 1.48497 * 109.47099 * 329.99800 * 13 11 9 17 17 C 1.39238 * 119.66544 * 0.02562 * 5 4 3 18 18 C 1.38332 * 119.91996 * 179.97438 * 2 1 3 19 19 S 1.76208 * 119.92549 * 359.97438 * 18 2 1 20 20 H 1.09007 * 109.47301 * 90.00023 * 1 2 3 21 21 H 1.08992 * 109.47423 * 210.00003 * 1 2 3 22 22 H 1.09001 * 109.47081 * 330.00187 * 1 2 3 23 23 H 1.08002 * 119.85642 * 359.97438 * 3 2 1 24 24 H 1.08001 * 119.72609 * 179.97438 * 4 3 2 25 25 H 1.07997 * 124.03948 * 179.97438 * 7 6 5 26 26 H 0.96998 * 120.00520 * 180.02562 * 12 11 9 27 27 H 1.34493 * 102.99991 * 269.98143 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1999 0.0000 4 6 3.5746 1.2087 -0.0005 5 6 4.2935 0.0082 -0.0005 6 16 6.0287 -0.2739 0.0057 7 6 5.8505 -1.9644 0.0002 8 6 4.5376 -2.3384 0.0005 9 6 4.1163 -3.6823 0.0012 10 1 3.1694 -3.9516 -0.4429 11 6 4.9229 -4.6664 0.5761 12 7 5.9809 -4.3238 1.2706 13 14 4.4946 -6.4713 0.3558 14 1 5.1587 -6.9920 -0.8662 15 1 4.9617 -7.2388 1.5382 16 1 3.0231 -6.6179 0.2202 17 6 3.6096 -1.2046 -0.0005 18 6 2.1969 -1.1990 0.0005 19 16 1.3118 -2.7226 0.0019 20 1 -0.3634 0.0000 -1.0277 21 1 -0.3634 -0.8899 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 1.6539 2.1332 -0.0004 24 1 4.1042 2.1500 -0.0009 25 1 6.6771 -2.6594 0.0012 26 1 6.5415 -5.0075 1.6697 27 1 1.1607 -2.9835 1.3126 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306896114.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:03 Heat of formation + Delta-G solvation = 31.522321 kcal Electronic energy + Delta-G solvation = -13608.378334 eV Core-core repulsion = 11355.156126 eV Total energy + Delta-G solvation = -2253.222208 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.73761 -35.19897 -32.74309 -31.30053 -28.61810 -26.88736 -25.42098 -22.26442 -21.53877 -19.15636 -17.76769 -16.55811 -16.12312 -15.15695 -14.80496 -14.21969 -13.87811 -13.60153 -13.02904 -12.78692 -12.27527 -12.02621 -11.46476 -11.33522 -11.29727 -10.97058 -10.84956 -10.61937 -10.45083 -10.05220 -9.74863 -9.30824 -9.08887 -8.48400 -7.41928 -6.98908 -6.60177 -6.51513 -4.19283 1.45142 1.82485 2.44636 2.80020 3.03469 3.15820 3.20793 3.46799 3.71498 3.79919 4.08537 4.39230 5.26619 5.32382 5.41600 5.63236 5.79180 5.95550 6.07931 6.18366 6.39739 6.55290 6.73539 6.95075 6.98926 7.34129 7.42369 7.74823 8.04674 8.62953 8.90028 9.00314 10.40909 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.021531 B = 0.010696 C = 0.007289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.125694 B = 2617.267822 C = 3840.306454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.061 4.061 3 C -0.138 4.138 4 C -0.065 4.065 5 C -0.157 4.157 6 S 0.038 5.962 7 C -0.340 4.340 8 C 0.076 3.924 9 C -0.432 4.432 10 H 0.110 0.890 11 C 0.064 3.936 12 N -0.812 5.812 13 Si 0.907 3.093 14 H -0.270 1.270 15 H -0.282 1.282 16 H -0.260 1.260 17 C -0.018 4.018 18 C -0.070 4.070 19 S -0.122 6.122 20 H 0.071 0.929 21 H 0.073 0.927 22 H 0.058 0.942 23 H 0.121 0.879 24 H 0.117 0.883 25 H 0.158 0.842 26 H 0.274 0.726 27 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.465 5.935 -1.362 8.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.068 4.068 3 C -0.160 4.160 4 C -0.089 4.089 5 C -0.274 4.274 6 S 0.301 5.699 7 C -0.476 4.476 8 C 0.067 3.933 9 C -0.466 4.466 10 H 0.127 0.873 11 C -0.150 4.150 12 N -0.439 5.439 13 Si 0.732 3.268 14 H -0.195 1.195 15 H -0.208 1.208 16 H -0.184 1.184 17 C -0.031 4.031 18 C -0.183 4.183 19 S 0.038 5.962 20 H 0.090 0.910 21 H 0.092 0.908 22 H 0.077 0.923 23 H 0.139 0.861 24 H 0.135 0.865 25 H 0.175 0.825 26 H 0.084 0.916 27 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -5.416 5.828 -1.436 8.085 hybrid contribution -0.571 -1.116 1.182 1.723 sum -5.987 4.712 -0.253 7.623 Atomic orbital electron populations 1.20847 0.90997 1.02400 1.02520 1.19870 0.95795 0.91952 0.99172 1.20583 0.93383 0.96726 1.05319 1.20536 0.93574 0.95576 0.99189 1.22721 0.98799 0.96243 1.09618 1.81885 1.00501 1.06459 1.81067 1.24303 1.01066 0.93982 1.28265 1.17357 0.88689 0.91919 0.95364 1.19804 1.05546 0.89825 1.31388 0.87272 1.25841 0.94415 1.01168 0.93614 1.69913 1.13292 1.35105 1.25636 0.86307 0.80085 0.81997 0.78362 1.19479 1.20792 1.18414 1.19961 0.92341 0.93761 0.97031 1.20771 0.93546 0.93999 1.10007 1.85270 1.71369 1.28210 1.11396 0.90994 0.90826 0.92321 0.86064 0.86500 0.82480 0.91570 0.96648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.51 9.55 36.00 0.34 -1.17 15 2 C -0.06 -1.08 5.89 -104.51 -0.62 -1.70 15 3 C -0.14 -2.27 9.67 -39.70 -0.38 -2.65 15 4 C -0.07 -1.18 10.06 -39.14 -0.39 -1.58 15 5 C -0.16 -3.47 6.44 -38.58 -0.25 -3.71 15 6 S 0.04 0.84 22.96 -107.50 -2.47 -1.63 15 7 C -0.34 -8.93 9.47 30.11 0.29 -8.64 15 8 C 0.08 2.02 5.63 -106.20 -0.60 1.42 15 9 C -0.43 -11.47 8.16 -38.08 -0.31 -11.78 15 10 H 0.11 2.78 5.23 -43.37 -0.23 2.56 15 11 C 0.06 1.65 5.36 -17.34 -0.09 1.56 15 12 N -0.81 -21.76 11.06 55.53 0.61 -21.15 15 13 Si 0.91 19.54 29.57 -169.99 -5.03 14.51 15 14 H -0.27 -5.73 7.11 56.52 0.40 -5.33 15 15 H -0.28 -6.00 7.11 56.52 0.40 -5.60 15 16 H -0.26 -5.50 7.11 56.52 0.40 -5.09 15 17 C -0.02 -0.43 6.02 -105.04 -0.63 -1.06 15 18 C -0.07 -1.48 6.16 -38.40 -0.24 -1.72 15 19 S -0.12 -2.42 20.35 -107.50 -2.19 -4.60 15 20 H 0.07 0.90 8.14 -51.93 -0.42 0.48 15 21 H 0.07 1.02 6.74 -51.93 -0.35 0.67 15 22 H 0.06 0.67 8.08 -51.93 -0.42 0.25 15 23 H 0.12 1.55 8.06 -52.49 -0.42 1.13 15 24 H 0.12 1.77 8.06 -52.49 -0.42 1.35 15 25 H 0.16 4.37 6.62 -52.49 -0.35 4.02 15 26 H 0.27 6.79 8.30 -40.82 -0.34 6.45 15 27 H 0.07 1.35 9.07 97.61 0.89 2.24 15 LS Contribution 255.97 15.07 3.86 3.86 Total: -1.00 -27.96 255.97 -8.95 -36.92 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -0.86 Total: 3.12 kcal Atomic # 6 Polarization: -28.15 SS G_CDS: -2.88 Total: -31.03 kcal Atomic # 7 Polarization: -21.76 SS G_CDS: 0.61 Total: -21.15 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.03 Total: 14.51 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -4.66 Total: -6.24 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -27.96 -8.95 -36.92 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306896114.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.441 kcal (2) G-P(sol) polarization free energy of solvation -27.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds