Wall clock time and date at job start Mon Mar 30 2020 06:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38448 * 119.92169 * 2 1 4 4 C 1.37707 * 120.28541 * 180.02562 * 3 2 1 5 5 C 1.39926 * 120.55266 * 359.97438 * 4 3 2 6 6 S 1.75802 * 130.15114 * 180.29227 * 5 4 3 7 7 C 1.69985 * 93.21469 * 180.02562 * 6 5 4 8 8 C 1.36515 * 111.91890 * 359.69795 * 7 6 5 9 9 C 1.40838 * 123.30235 * 180.23406 * 8 7 6 10 10 H 1.07998 * 120.00033 * 208.36200 * 9 8 7 11 11 C 1.39632 * 119.99990 * 28.36049 * 9 8 7 12 12 N 1.31113 * 120.00317 * 9.14567 * 11 9 8 13 13 Si 1.86807 * 119.99831 * 189.14239 * 11 9 8 14 14 H 1.48496 * 109.46763 * 90.00113 * 13 11 9 15 15 H 1.48504 * 109.46891 * 209.99891 * 13 11 9 16 16 H 1.48497 * 109.47099 * 329.99800 * 13 11 9 17 17 C 1.39238 * 119.66544 * 0.02562 * 5 4 3 18 18 C 1.38332 * 119.91996 * 179.97438 * 2 1 3 19 19 S 1.76208 * 119.92549 * 359.97438 * 18 2 1 20 20 H 1.09007 * 109.47301 * 90.00023 * 1 2 3 21 21 H 1.08992 * 109.47423 * 210.00003 * 1 2 3 22 22 H 1.09001 * 109.47081 * 330.00187 * 1 2 3 23 23 H 1.08002 * 119.85642 * 359.97438 * 3 2 1 24 24 H 1.08001 * 119.72609 * 179.97438 * 4 3 2 25 25 H 1.07997 * 124.03948 * 179.97438 * 7 6 5 26 26 H 0.96998 * 120.00520 * 180.02562 * 12 11 9 27 27 H 1.34493 * 102.99991 * 269.98143 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1999 0.0000 4 6 3.5746 1.2087 -0.0005 5 6 4.2935 0.0082 -0.0005 6 16 6.0287 -0.2739 0.0057 7 6 5.8505 -1.9644 0.0002 8 6 4.5376 -2.3384 0.0005 9 6 4.1163 -3.6823 0.0012 10 1 3.1694 -3.9516 -0.4429 11 6 4.9229 -4.6664 0.5761 12 7 5.9809 -4.3238 1.2706 13 14 4.4946 -6.4713 0.3558 14 1 5.1587 -6.9920 -0.8662 15 1 4.9617 -7.2388 1.5382 16 1 3.0231 -6.6179 0.2202 17 6 3.6096 -1.2046 -0.0005 18 6 2.1969 -1.1990 0.0005 19 16 1.3118 -2.7226 0.0019 20 1 -0.3634 0.0000 -1.0277 21 1 -0.3634 -0.8899 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 1.6539 2.1332 -0.0004 24 1 4.1042 2.1500 -0.0009 25 1 6.6771 -2.6594 0.0012 26 1 6.5415 -5.0075 1.6697 27 1 1.1607 -2.9835 1.3126 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306896114.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:02 Heat of formation + Delta-G solvation = 16.622970 kcal Electronic energy + Delta-G solvation = -13609.024418 eV Core-core repulsion = 11355.156126 eV Total energy + Delta-G solvation = -2253.868292 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.28242 -36.94963 -34.47374 -32.82105 -30.25854 -28.53253 -27.05938 -23.91011 -23.09375 -20.88028 -19.35462 -18.42514 -17.75195 -16.90818 -16.33645 -15.81533 -15.38091 -15.06144 -14.58409 -14.45358 -13.74681 -13.38853 -13.04104 -13.01828 -12.87674 -12.69523 -12.47617 -12.27169 -12.10139 -11.65172 -11.44244 -11.06793 -10.92764 -10.09050 -9.09569 -8.65432 -8.50164 -8.23126 -6.17930 -0.10527 0.26942 0.90020 1.14136 1.30182 1.38256 1.51075 1.87020 1.94463 1.98445 2.27253 2.74801 3.39621 3.99529 4.01649 4.31300 4.48744 4.69063 4.80077 4.95427 4.99232 5.20183 5.32228 5.35646 5.42539 5.56664 5.72540 6.01743 6.09362 6.65620 6.94432 7.03584 8.49175 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.021531 B = 0.010696 C = 0.007289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.125694 B = 2617.267822 C = 3840.306454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.050 4.050 3 C -0.119 4.119 4 C -0.063 4.063 5 C -0.175 4.175 6 S 0.060 5.940 7 C -0.377 4.377 8 C 0.052 3.948 9 C -0.458 4.458 10 H 0.114 0.886 11 C 0.020 3.980 12 N -0.847 5.847 13 Si 0.974 3.026 14 H -0.264 1.264 15 H -0.276 1.276 16 H -0.252 1.252 17 C -0.060 4.060 18 C -0.100 4.100 19 S -0.116 6.116 20 H 0.089 0.911 21 H 0.069 0.931 22 H 0.092 0.908 23 H 0.175 0.825 24 H 0.152 0.848 25 H 0.128 0.872 26 H 0.277 0.723 27 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.954 7.793 -1.577 11.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.056 4.056 3 C -0.141 4.141 4 C -0.087 4.087 5 C -0.292 4.292 6 S 0.323 5.677 7 C -0.513 4.513 8 C 0.043 3.957 9 C -0.492 4.492 10 H 0.131 0.869 11 C -0.191 4.191 12 N -0.476 5.476 13 Si 0.795 3.205 14 H -0.189 1.189 15 H -0.202 1.202 16 H -0.175 1.175 17 C -0.072 4.072 18 C -0.213 4.213 19 S 0.043 5.957 20 H 0.107 0.893 21 H 0.087 0.913 22 H 0.111 0.889 23 H 0.192 0.808 24 H 0.170 0.830 25 H 0.146 0.854 26 H 0.087 0.913 27 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -7.918 7.706 -1.656 11.172 hybrid contribution 0.096 -1.524 1.236 1.965 sum -7.822 6.182 -0.420 9.979 Atomic orbital electron populations 1.20957 0.87763 1.03918 1.04017 1.20473 0.98107 0.91022 0.96007 1.21223 0.92785 0.98263 1.01862 1.21037 0.94592 0.95352 0.97674 1.23034 0.98276 0.97341 1.10541 1.81399 1.01527 1.03067 1.81729 1.24188 1.00526 0.96374 1.30210 1.17816 0.89683 0.93253 0.94965 1.20127 1.06183 0.90642 1.32253 0.86851 1.26725 0.94057 1.05430 0.92924 1.70029 1.14410 1.36505 1.26628 0.85303 0.80183 0.76518 0.78448 1.18930 1.20160 1.17496 1.20053 0.93757 0.93569 0.99826 1.21101 0.92786 0.95778 1.11671 1.85090 1.70404 1.29043 1.11118 0.89268 0.91263 0.88935 0.80783 0.83014 0.85386 0.91305 0.97068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.49 9.55 71.23 0.68 -1.81 15 2 C -0.05 -1.59 5.89 -19.79 -0.12 -1.70 15 3 C -0.12 -3.31 9.67 22.19 0.21 -3.10 15 4 C -0.06 -2.08 10.06 22.55 0.23 -1.85 15 5 C -0.18 -7.62 6.44 22.92 0.15 -7.48 15 6 S 0.06 2.73 22.96 -56.49 -1.30 1.44 15 7 C -0.38 -20.93 9.47 67.42 0.64 -20.30 15 8 C 0.05 2.92 5.63 -20.89 -0.12 2.80 15 9 C -0.46 -25.29 8.16 23.24 0.19 -25.10 15 10 H 0.11 5.96 5.23 -8.71 -0.05 5.91 15 11 C 0.02 1.05 5.36 85.14 0.46 1.50 15 12 N -0.85 -47.63 11.06 21.78 0.24 -47.39 15 13 Si 0.97 40.97 29.57 68.60 2.03 43.00 15 14 H -0.26 -10.81 7.11 99.48 0.71 -10.10 15 15 H -0.28 -11.25 7.11 99.48 0.71 -10.54 15 16 H -0.25 -10.12 7.11 99.48 0.71 -9.41 15 17 C -0.06 -2.91 6.02 -20.14 -0.12 -3.03 15 18 C -0.10 -4.14 6.16 23.04 0.14 -4.00 15 19 S -0.12 -4.55 20.35 -56.49 -1.15 -5.70 15 20 H 0.09 1.80 8.14 -2.38 -0.02 1.78 15 21 H 0.07 1.68 6.74 -2.39 -0.02 1.66 15 22 H 0.09 1.52 8.08 -2.39 -0.02 1.50 15 23 H 0.17 3.08 8.06 -2.91 -0.02 3.06 15 24 H 0.15 3.87 8.06 -2.91 -0.02 3.85 15 25 H 0.13 7.69 6.62 -2.91 -0.02 7.67 15 26 H 0.28 14.37 8.30 -92.71 -0.77 13.60 15 27 H 0.06 2.55 9.07 73.35 0.67 3.21 15 Total: -1.00 -64.53 255.97 4.01 -60.52 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: 1.85 Total: 12.18 kcal Atomic # 6 Polarization: -66.39 SS G_CDS: 2.34 Total: -64.05 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: 0.24 Total: -47.39 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 43.00 kcal Atomic # 16 Polarization: -1.82 SS G_CDS: -2.45 Total: -4.26 kcal Total: -64.53 4.01 -60.52 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306896114.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.139 kcal (2) G-P(sol) polarization free energy of solvation -64.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds