Wall clock time and date at job start Mon Mar 30 2020 06:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37482 * 119.93946 * 2 1 4 4 C 1.38368 * 121.12708 * 180.02562 * 3 2 1 5 5 C 1.39233 * 121.50907 * 359.97438 * 4 3 2 6 6 S 1.76065 * 130.49628 * 179.97438 * 5 4 3 7 7 C 1.75508 * 91.56386 * 180.02562 * 6 5 4 8 8 S 1.76203 * 124.73566 * 179.97438 * 7 6 5 9 9 C 1.34161 * 110.52782 * 0.02562 * 7 6 5 10 10 C 1.39523 * 115.60735 * 359.71204 * 9 7 6 11 11 C 1.40369 * 119.94271 * 180.02562 * 2 1 3 12 12 C 1.40507 * 120.42269 * 359.97438 * 11 2 1 13 13 H 1.07997 * 119.99884 * 321.46237 * 12 11 2 14 14 C 1.39849 * 119.99859 * 141.44763 * 12 11 2 15 15 N 1.30931 * 120.00243 * 334.27962 * 14 12 11 16 16 Si 1.86801 * 119.99459 * 154.27349 * 14 12 11 17 17 H 1.48503 * 109.47011 * 180.02562 * 16 14 12 18 18 H 1.48502 * 109.47481 * 300.00078 * 16 14 12 19 19 H 1.48504 * 109.47207 * 60.00400 * 16 14 12 20 20 H 1.09000 * 109.47211 * 265.16283 * 1 2 3 21 21 H 1.09007 * 109.47003 * 25.15749 * 1 2 3 22 22 H 1.08995 * 109.47250 * 145.16152 * 1 2 3 23 23 H 1.07994 * 119.44033 * 0.02562 * 3 2 1 24 24 H 1.07998 * 119.24734 * 179.97438 * 4 3 2 25 25 H 1.41003 * 99.99941 * 0.03061 * 8 7 6 26 26 H 1.08001 * 122.19819 * 180.02562 * 9 7 6 27 27 H 0.96996 * 120.00232 * 352.95412 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1931 1.1914 0.0000 4 6 3.5765 1.2200 -0.0005 5 6 4.3286 0.0483 -0.0006 6 16 6.0730 -0.1906 -0.0018 7 6 5.8823 -1.9353 -0.0016 8 16 7.2127 -3.0906 -0.0031 9 6 4.5822 -2.2665 -0.0012 10 6 3.6873 -1.1961 0.0052 11 6 2.2076 -1.2163 -0.0005 12 6 1.5128 -2.4376 -0.0005 13 1 0.6101 -2.5453 0.5825 14 6 1.9900 -3.5135 -0.7558 15 7 2.7313 -3.2940 -1.8125 16 14 1.5701 -5.2640 -0.2567 17 1 2.1927 -6.2143 -1.2131 18 1 2.0883 -5.5270 1.1099 19 1 0.0958 -5.4423 -0.2699 20 1 -0.3633 -0.0867 1.0240 21 1 -0.3633 0.9302 -0.4369 22 1 -0.3633 -0.8434 -0.5870 23 1 1.6430 2.1207 0.0004 24 1 4.0845 2.1731 -0.0009 25 1 8.3081 -2.2027 -0.0036 26 1 4.2502 -3.2942 -0.0007 27 1 2.8652 -2.3877 -2.1313 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306910383.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:39 Heat of formation + Delta-G solvation = 23.897472 kcal Electronic energy + Delta-G solvation = -13735.418562 eV Core-core repulsion = 11481.865716 eV Total energy + Delta-G solvation = -2253.552846 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.42019 -34.57214 -34.12380 -30.86921 -28.73469 -26.15006 -24.92874 -22.64632 -21.07937 -19.23017 -18.49203 -16.63995 -16.02434 -15.17508 -14.51379 -14.17718 -13.73452 -13.29025 -13.02005 -12.72867 -12.25513 -12.03266 -11.88650 -11.37423 -11.13334 -10.88349 -10.60184 -10.51245 -10.37355 -10.19177 -10.06626 -9.47098 -9.04940 -8.48928 -8.20686 -7.54715 -6.96636 -6.62304 -4.63976 1.61763 1.96244 2.17691 2.50027 2.78255 3.06555 3.13422 3.14123 3.27615 3.39304 3.86836 4.33739 5.08828 5.84985 5.96162 6.11288 6.25738 6.49565 6.53614 6.59151 6.78892 6.83846 6.94002 7.09769 7.42220 7.47912 7.55346 7.65271 7.81029 7.98343 8.41531 8.57486 9.79887 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.016500 B = 0.012745 C = 0.007492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.584777 B = 2196.388812 C = 3736.263954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.211 4.211 3 C -0.042 4.042 4 C -0.230 4.230 5 C -0.058 4.058 6 S 0.008 5.992 7 C -0.249 4.249 8 S -0.084 6.084 9 C -0.004 4.004 10 C -0.172 4.172 11 C 0.143 3.857 12 C -0.493 4.493 13 H 0.089 0.911 14 C 0.036 3.964 15 N -0.763 5.763 16 Si 1.055 2.945 17 H -0.269 1.269 18 H -0.269 1.269 19 H -0.272 1.272 20 H 0.043 0.957 21 H 0.040 0.960 22 H 0.061 0.939 23 H 0.099 0.901 24 H 0.094 0.906 25 H 0.087 0.913 26 H 0.140 0.860 27 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.187 0.711 1.978 2.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.215 4.215 3 C -0.064 4.064 4 C -0.256 4.256 5 C -0.175 4.175 6 S 0.266 5.734 7 C -0.474 4.474 8 S 0.076 5.924 9 C -0.039 4.039 10 C -0.180 4.180 11 C 0.137 3.863 12 C -0.520 4.520 13 H 0.107 0.893 14 C -0.189 4.189 15 N -0.383 5.383 16 Si 0.877 3.123 17 H -0.193 1.193 18 H -0.195 1.195 19 H -0.197 1.197 20 H 0.062 0.938 21 H 0.059 0.941 22 H 0.080 0.920 23 H 0.117 0.883 24 H 0.112 0.888 25 H 0.050 0.950 26 H 0.158 0.842 27 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.444 -0.842 1.529 3.861 hybrid contribution -1.320 2.258 0.330 2.637 sum 2.124 1.416 1.860 3.158 Atomic orbital electron populations 1.20345 0.92632 1.00517 1.00128 1.19543 0.94769 0.92399 1.14758 1.20322 0.92865 0.96382 0.96799 1.19465 0.93129 0.94074 1.18922 1.22210 0.93252 0.97662 1.04335 1.83447 1.06549 1.00370 1.83013 1.24332 0.99280 0.97090 1.26742 1.86324 0.99731 1.10176 1.96146 1.19765 0.89235 1.00338 0.94566 1.19000 0.93952 0.89877 1.15190 1.18324 0.87889 0.92604 0.87464 1.20482 1.10459 0.95990 1.25077 0.89271 1.27113 0.92087 1.06555 0.93137 1.70481 1.23202 1.28468 1.16157 0.83772 0.77674 0.73149 0.77714 1.19300 1.19453 1.19724 0.93786 0.94107 0.92043 0.88298 0.88782 0.94966 0.84248 0.88596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.52 9.35 36.00 0.34 -1.18 15 2 C -0.21 -4.75 5.92 -104.10 -0.62 -5.37 15 3 C -0.04 -0.90 9.58 -39.81 -0.38 -1.28 15 4 C -0.23 -5.06 10.01 -39.16 -0.39 -5.46 15 5 C -0.06 -1.35 6.47 -38.55 -0.25 -1.60 15 6 S 0.01 0.18 23.28 -107.50 -2.50 -2.33 15 7 C -0.25 -5.45 6.72 29.30 0.20 -5.26 15 8 S -0.08 -1.54 26.18 -107.50 -2.81 -4.35 15 9 C 0.00 -0.10 8.26 -40.54 -0.34 -0.44 15 10 C -0.17 -4.26 5.14 -104.76 -0.54 -4.80 15 11 C 0.14 3.52 5.08 -104.25 -0.53 2.99 15 12 C -0.49 -11.83 7.61 -38.12 -0.29 -12.12 15 13 H 0.09 2.05 7.58 -52.49 -0.40 1.66 15 14 C 0.04 0.84 3.59 -17.33 -0.06 0.78 15 15 N -0.76 -18.93 11.68 55.54 0.65 -18.28 15 16 Si 1.05 20.03 30.00 -169.99 -5.10 14.93 15 17 H -0.27 -5.14 7.11 56.52 0.40 -4.74 15 18 H -0.27 -5.00 7.11 56.52 0.40 -4.60 15 19 H -0.27 -4.85 7.11 56.52 0.40 -4.45 15 20 H 0.04 0.79 8.14 -51.93 -0.42 0.36 15 21 H 0.04 0.68 8.04 -51.92 -0.42 0.26 15 22 H 0.06 1.20 7.24 -51.93 -0.38 0.83 15 23 H 0.10 1.79 8.05 -52.49 -0.42 1.36 15 24 H 0.09 1.86 8.06 -52.49 -0.42 1.44 15 25 H 0.09 1.40 9.55 96.90 0.93 2.32 15 26 H 0.14 3.43 6.11 -52.49 -0.32 3.11 15 27 H 0.30 7.88 7.30 -40.82 -0.30 7.58 15 LS Contribution 260.27 15.07 3.92 3.92 Total: -1.00 -25.04 260.27 -9.66 -34.70 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -0.95 Total: 5.14 kcal Atomic # 6 Polarization: -30.86 SS G_CDS: -2.86 Total: -33.72 kcal Atomic # 7 Polarization: -18.93 SS G_CDS: 0.65 Total: -18.28 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.10 Total: 14.93 kcal Atomic # 16 Polarization: -1.36 SS G_CDS: -5.32 Total: -6.68 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -25.04 -9.66 -34.70 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306910383.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.593 kcal (2) G-P(sol) polarization free energy of solvation -25.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds