Wall clock time and date at job start Mon Mar 30 2020 06:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37482 * 119.93946 * 2 1 4 4 C 1.38368 * 121.12708 * 180.02562 * 3 2 1 5 5 C 1.39233 * 121.50907 * 359.97438 * 4 3 2 6 6 S 1.76065 * 130.49628 * 179.97438 * 5 4 3 7 7 C 1.75508 * 91.56386 * 180.02562 * 6 5 4 8 8 S 1.76203 * 124.73566 * 179.97438 * 7 6 5 9 9 C 1.34161 * 110.52782 * 0.02562 * 7 6 5 10 10 C 1.39523 * 115.60735 * 359.71204 * 9 7 6 11 11 C 1.40369 * 119.94271 * 180.02562 * 2 1 3 12 12 C 1.40507 * 120.42269 * 359.97438 * 11 2 1 13 13 H 1.07997 * 119.99884 * 321.46237 * 12 11 2 14 14 C 1.39849 * 119.99859 * 141.44763 * 12 11 2 15 15 N 1.30931 * 120.00243 * 334.27962 * 14 12 11 16 16 Si 1.86801 * 119.99459 * 154.27349 * 14 12 11 17 17 H 1.48503 * 109.47011 * 180.02562 * 16 14 12 18 18 H 1.48502 * 109.47481 * 300.00078 * 16 14 12 19 19 H 1.48504 * 109.47207 * 60.00400 * 16 14 12 20 20 H 1.09000 * 109.47211 * 265.16283 * 1 2 3 21 21 H 1.09007 * 109.47003 * 25.15749 * 1 2 3 22 22 H 1.08995 * 109.47250 * 145.16152 * 1 2 3 23 23 H 1.07994 * 119.44033 * 0.02562 * 3 2 1 24 24 H 1.07998 * 119.24734 * 179.97438 * 4 3 2 25 25 H 1.41003 * 99.99941 * 0.03061 * 8 7 6 26 26 H 1.08001 * 122.19819 * 180.02562 * 9 7 6 27 27 H 0.96996 * 120.00232 * 352.95412 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1931 1.1914 0.0000 4 6 3.5765 1.2200 -0.0005 5 6 4.3286 0.0483 -0.0006 6 16 6.0730 -0.1906 -0.0018 7 6 5.8823 -1.9353 -0.0016 8 16 7.2127 -3.0906 -0.0031 9 6 4.5822 -2.2665 -0.0012 10 6 3.6873 -1.1961 0.0052 11 6 2.2076 -1.2163 -0.0005 12 6 1.5128 -2.4376 -0.0005 13 1 0.6101 -2.5453 0.5825 14 6 1.9900 -3.5135 -0.7558 15 7 2.7313 -3.2940 -1.8125 16 14 1.5701 -5.2640 -0.2567 17 1 2.1927 -6.2143 -1.2131 18 1 2.0883 -5.5270 1.1099 19 1 0.0958 -5.4423 -0.2699 20 1 -0.3633 -0.0867 1.0240 21 1 -0.3633 0.9302 -0.4369 22 1 -0.3633 -0.8434 -0.5870 23 1 1.6430 2.1207 0.0004 24 1 4.0845 2.1731 -0.0009 25 1 8.3081 -2.2027 -0.0036 26 1 4.2502 -3.2942 -0.0007 27 1 2.8652 -2.3877 -2.1313 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306910383.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:39 Heat of formation + Delta-G solvation = 12.886355 kcal Electronic energy + Delta-G solvation = -13735.896040 eV Core-core repulsion = 11481.865716 eV Total energy + Delta-G solvation = -2254.030324 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.14423 -36.28150 -35.86513 -32.55765 -30.46461 -27.81142 -26.66400 -24.37238 -22.80068 -20.93426 -20.20900 -18.30365 -17.65505 -16.85200 -16.22775 -15.74328 -15.38102 -15.01812 -14.65638 -14.43375 -13.86874 -13.71990 -13.50830 -12.94264 -12.72524 -12.51427 -12.28195 -12.03798 -11.99664 -11.80457 -11.64446 -11.17929 -10.77526 -10.18088 -9.88117 -9.35053 -8.63819 -8.28897 -6.43574 -0.13811 0.40908 0.54311 0.74292 1.04192 1.51945 1.59882 1.61419 1.64162 1.79154 2.30250 2.61026 3.32645 4.20583 4.30860 4.41954 4.68188 4.85438 4.90979 5.00876 5.08937 5.11045 5.29567 5.37411 5.63681 5.66034 5.81736 5.90664 6.06927 6.24417 6.65554 6.83187 7.96045 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.016500 B = 0.012745 C = 0.007492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.584777 B = 2196.388812 C = 3736.263954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.226 4.226 3 C -0.046 4.046 4 C -0.231 4.231 5 C -0.092 4.092 6 S 0.052 5.948 7 C -0.252 4.252 8 S -0.069 6.069 9 C -0.030 4.030 10 C -0.193 4.193 11 C 0.114 3.886 12 C -0.517 4.517 13 H 0.090 0.910 14 C 0.011 3.989 15 N -0.786 5.786 16 Si 1.097 2.903 17 H -0.272 1.272 18 H -0.264 1.264 19 H -0.251 1.251 20 H 0.054 0.946 21 H 0.066 0.934 22 H 0.049 0.951 23 H 0.135 0.865 24 H 0.117 0.883 25 H 0.113 0.887 26 H 0.125 0.875 27 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.523 1.362 2.479 3.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.229 4.229 3 C -0.067 4.067 4 C -0.256 4.256 5 C -0.209 4.209 6 S 0.310 5.690 7 C -0.478 4.478 8 S 0.091 5.909 9 C -0.065 4.065 10 C -0.201 4.201 11 C 0.108 3.892 12 C -0.544 4.544 13 H 0.108 0.892 14 C -0.209 4.209 15 N -0.407 5.407 16 Si 0.914 3.086 17 H -0.196 1.196 18 H -0.189 1.189 19 H -0.174 1.174 20 H 0.073 0.927 21 H 0.085 0.915 22 H 0.068 0.932 23 H 0.152 0.848 24 H 0.135 0.865 25 H 0.076 0.924 26 H 0.143 0.857 27 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.778 -0.171 2.036 4.295 hybrid contribution -1.296 2.197 0.206 2.559 sum 2.482 2.027 2.243 3.912 Atomic orbital electron populations 1.20329 0.90516 1.01382 1.00817 1.20035 0.96604 0.92301 1.13990 1.20721 0.92920 0.97403 0.95700 1.19883 0.93773 0.94555 1.17427 1.22587 0.95056 0.97860 1.05377 1.83113 1.04468 0.98970 1.82400 1.24791 0.99998 0.98841 1.24173 1.86265 0.99212 1.09779 1.95655 1.19697 0.90187 0.99677 0.96966 1.19282 0.94523 0.90806 1.15530 1.18751 0.88430 0.93837 0.88184 1.20588 1.11035 0.96711 1.26101 0.89185 1.28222 0.90944 1.09522 0.92180 1.70596 1.25589 1.26853 1.17636 0.83266 0.78711 0.69220 0.77395 1.19638 1.18863 1.17441 0.92694 0.91486 0.93246 0.84753 0.86531 0.92353 0.85730 0.90742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.73 9.35 71.23 0.67 -2.06 15 2 C -0.23 -10.04 5.92 -19.53 -0.12 -10.15 15 3 C -0.05 -1.88 9.58 22.12 0.21 -1.67 15 4 C -0.23 -9.80 10.01 22.54 0.23 -9.57 15 5 C -0.09 -4.26 6.47 22.94 0.15 -4.11 15 6 S 0.05 2.12 23.28 -56.49 -1.32 0.80 15 7 C -0.25 -10.90 6.72 66.89 0.45 -10.45 15 8 S -0.07 -2.43 26.18 -56.49 -1.48 -3.91 15 9 C -0.03 -1.46 8.26 21.65 0.18 -1.28 15 10 C -0.19 -9.73 5.14 -19.96 -0.10 -9.84 15 11 C 0.11 5.69 5.08 -19.62 -0.10 5.59 15 12 C -0.52 -25.40 7.61 23.21 0.18 -25.22 15 13 H 0.09 4.23 7.58 -2.91 -0.02 4.21 15 14 C 0.01 0.53 3.59 85.22 0.31 0.83 15 15 N -0.79 -40.35 11.68 21.81 0.25 -40.09 15 16 Si 1.10 40.67 30.00 68.60 2.06 42.72 15 17 H -0.27 -10.12 7.11 99.48 0.71 -9.41 15 18 H -0.26 -9.45 7.11 99.48 0.71 -8.75 15 19 H -0.25 -8.35 7.11 99.48 0.71 -7.64 15 20 H 0.05 1.88 8.14 -2.39 -0.02 1.87 15 21 H 0.07 2.08 8.04 -2.38 -0.02 2.06 15 22 H 0.05 1.92 7.24 -2.39 -0.02 1.90 15 23 H 0.13 4.40 8.05 -2.91 -0.02 4.37 15 24 H 0.12 4.31 8.06 -2.91 -0.02 4.29 15 25 H 0.11 3.28 9.55 73.80 0.70 3.98 15 26 H 0.12 6.34 6.11 -2.91 -0.02 6.32 15 27 H 0.28 15.41 7.30 -92.71 -0.68 14.73 15 Total: -1.00 -54.03 260.27 3.57 -50.46 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 2.01 Total: 17.94 kcal Atomic # 6 Polarization: -69.97 SS G_CDS: 2.05 Total: -67.93 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: 0.25 Total: -40.09 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.06 Total: 42.72 kcal Atomic # 16 Polarization: -0.32 SS G_CDS: -2.79 Total: -3.11 kcal Total: -54.03 3.57 -50.46 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306910383.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.349 kcal (2) G-P(sol) polarization free energy of solvation -54.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds