Wall clock time and date at job start Mon Mar 30 2020 06:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.40382 * 119.81602 * 2 1 4 4 C 1.45791 * 128.51679 * 359.95160 * 3 2 1 5 5 C 1.31550 * 114.94702 * 180.30755 * 4 3 2 6 6 S 1.75217 * 111.56457 * 359.97438 * 5 4 3 7 7 C 1.40284 * 119.81116 * 180.27966 * 3 2 1 8 8 C 1.40039 * 120.74109 * 359.72671 * 7 3 2 9 9 C 1.37765 * 120.77220 * 359.97438 * 8 7 3 10 10 S 1.76205 * 120.42602 * 180.02562 * 9 8 7 11 11 C 1.39850 * 119.81690 * 179.72633 * 2 1 3 12 12 C 1.40979 * 120.41876 * 359.97438 * 11 2 1 13 13 H 1.07999 * 120.00141 * 43.98818 * 12 11 2 14 14 C 1.39839 * 120.00270 * 223.70679 * 12 11 2 15 15 N 1.30952 * 119.99923 * 20.91531 * 14 12 11 16 16 Si 1.86797 * 120.00204 * 200.91530 * 14 12 11 17 17 H 1.48493 * 109.47431 * 60.00152 * 16 14 12 18 18 H 1.48500 * 109.47300 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47374 * 300.00011 * 16 14 12 20 20 H 1.09005 * 109.46674 * 270.27510 * 1 2 3 21 21 H 1.08995 * 109.47108 * 30.27325 * 1 2 3 22 22 H 1.09000 * 109.46767 * 150.27856 * 1 2 3 23 23 H 1.07996 * 122.52509 * 0.28313 * 4 3 2 24 24 H 1.08000 * 124.21865 * 180.02562 * 5 4 3 25 25 H 1.08001 * 119.61284 * 179.97438 * 8 7 3 26 26 H 1.34493 * 102.99908 * 269.97946 * 10 9 8 27 27 H 0.96997 * 119.99751 * 179.81880 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2050 1.2180 0.0000 4 6 1.6667 2.5729 -0.0010 5 6 2.5703 3.5289 -0.0071 6 16 4.1969 2.8776 -0.0117 7 6 3.6078 1.2179 -0.0059 8 6 4.3235 0.0142 -0.0062 9 6 3.6664 -1.1966 0.0000 10 16 4.5761 -2.7056 0.0004 11 6 2.2024 -1.2134 0.0058 12 6 1.5025 -2.4371 0.0122 13 1 0.6500 -2.5751 -0.6364 14 6 1.9156 -3.4745 0.8540 15 7 2.6543 -3.2118 1.9029 16 14 1.4138 -5.2350 0.4823 17 1 1.9344 -5.6270 -0.8520 18 1 1.9751 -6.1390 1.5182 19 1 -0.0676 -5.3388 0.4857 20 1 -0.3633 0.0049 1.0277 21 1 -0.3633 0.8875 -0.5180 22 1 -0.3633 -0.8925 -0.5095 23 1 0.6061 2.7763 0.0027 24 1 2.3385 4.5837 -0.0083 25 1 5.4033 0.0354 -0.0112 26 1 4.7264 -2.9686 -1.3100 27 1 2.9387 -3.9311 2.4882 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306910411.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:49 Heat of formation + Delta-G solvation = 34.066779 kcal Electronic energy + Delta-G solvation = -13670.724328 eV Core-core repulsion = 11417.612456 eV Total energy + Delta-G solvation = -2253.111872 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.17694 -34.79631 -32.95065 -31.65640 -28.71604 -26.26233 -24.90881 -22.57266 -20.42042 -19.85524 -17.23121 -16.59843 -16.12748 -15.35580 -14.82940 -14.06790 -13.73114 -13.11958 -13.01465 -12.41583 -12.02084 -11.90101 -11.70789 -11.41953 -11.33520 -11.22884 -10.71481 -10.61232 -10.26696 -9.86169 -9.58800 -9.51558 -8.99241 -8.32607 -7.31163 -6.94226 -6.75588 -6.45778 -4.46306 1.56068 2.41173 2.57190 2.77511 2.89760 3.08648 3.11428 3.15008 3.28533 3.95561 4.06075 4.60937 5.18197 5.38729 5.75290 6.00553 6.24137 6.35536 6.41334 6.56896 6.65778 6.73818 6.88166 7.10587 7.15380 7.23092 7.42135 7.69445 7.87364 8.27274 8.63048 8.77112 10.20032 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.032947 B = 0.008340 C = 0.006951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.647928 B = 3356.413936 C = 4027.089362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.165 4.165 3 C -0.025 4.025 4 C -0.117 4.117 5 C -0.197 4.197 6 S 0.002 5.998 7 C -0.229 4.229 8 C -0.017 4.017 9 C -0.136 4.136 10 S -0.102 6.102 11 C 0.163 3.837 12 C -0.473 4.473 13 H 0.087 0.913 14 C 0.108 3.892 15 N -0.759 5.759 16 Si 0.902 3.098 17 H -0.264 1.264 18 H -0.276 1.276 19 H -0.269 1.269 20 H 0.050 0.950 21 H 0.038 0.962 22 H 0.061 0.939 23 H 0.131 0.869 24 H 0.151 0.849 25 H 0.106 0.894 26 H 0.021 0.979 27 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.564 4.146 -1.958 4.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.171 4.171 3 C -0.031 4.031 4 C -0.149 4.149 5 C -0.330 4.330 6 S 0.261 5.739 7 C -0.345 4.345 8 C -0.042 4.042 9 C -0.251 4.251 10 S 0.056 5.944 11 C 0.156 3.844 12 C -0.501 4.501 13 H 0.105 0.895 14 C -0.115 4.115 15 N -0.382 5.382 16 Si 0.726 3.274 17 H -0.188 1.188 18 H -0.201 1.201 19 H -0.194 1.194 20 H 0.069 0.931 21 H 0.057 0.943 22 H 0.080 0.920 23 H 0.149 0.851 24 H 0.169 0.831 25 H 0.124 0.876 26 H -0.014 1.014 27 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.450 3.947 -1.519 4.471 hybrid contribution -1.901 -0.549 -0.999 2.217 sum -0.451 3.398 -2.518 4.253 Atomic orbital electron populations 1.20352 0.92501 1.00280 1.00460 1.19675 0.94483 0.90293 1.12651 1.18955 0.91404 0.92388 1.00311 1.21043 0.99610 0.91523 1.02734 1.24630 0.96252 1.02111 1.10043 1.83448 1.07765 0.99425 1.83258 1.21714 0.95712 0.94635 1.22452 1.20373 0.97369 0.89624 0.96875 1.22149 0.95537 0.92026 1.15356 1.85442 1.69855 1.32222 1.06881 1.18324 0.89045 0.92052 0.84930 1.19222 1.13439 0.96458 1.21014 0.89518 1.25515 0.92420 1.00361 0.93193 1.69661 1.24298 1.35656 1.08580 0.86467 0.79309 0.81928 0.79659 1.18836 1.20052 1.19354 0.93112 0.94310 0.91999 0.85102 0.83109 0.87599 1.01425 0.90239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.57 9.41 36.01 0.34 -1.23 15 2 C -0.17 -3.86 5.99 -103.21 -0.62 -4.48 15 3 C -0.02 -0.55 5.96 -105.30 -0.63 -1.17 15 4 C -0.12 -2.17 9.75 -38.41 -0.37 -2.55 15 5 C -0.20 -3.33 10.99 28.88 0.32 -3.01 15 6 S 0.00 0.04 23.23 -107.50 -2.50 -2.46 15 7 C -0.23 -5.12 6.47 -38.14 -0.25 -5.37 15 8 C -0.02 -0.40 9.78 -39.08 -0.38 -0.78 15 9 C -0.14 -3.34 5.91 -36.47 -0.22 -3.56 15 10 S -0.10 -2.34 21.71 -107.50 -2.33 -4.67 15 11 C 0.16 4.11 5.38 -104.97 -0.56 3.54 15 12 C -0.47 -11.70 7.72 -37.95 -0.29 -11.99 15 13 H 0.09 2.06 6.87 -52.49 -0.36 1.70 15 14 C 0.11 2.58 3.74 -17.33 -0.06 2.51 15 15 N -0.76 -18.86 11.04 55.54 0.61 -18.25 15 16 Si 0.90 18.28 29.61 -169.99 -5.03 13.25 15 17 H -0.26 -5.39 7.11 56.52 0.40 -4.98 15 18 H -0.28 -5.46 7.11 56.52 0.40 -5.06 15 19 H -0.27 -5.32 7.11 56.52 0.40 -4.92 15 20 H 0.05 0.99 8.14 -51.93 -0.42 0.56 15 21 H 0.04 0.67 7.18 -51.93 -0.37 0.29 15 22 H 0.06 1.21 6.50 -51.93 -0.34 0.88 15 23 H 0.13 2.09 7.46 -52.49 -0.39 1.70 15 24 H 0.15 2.00 8.06 -52.49 -0.42 1.58 15 25 H 0.11 2.24 8.06 -52.49 -0.42 1.82 15 26 H 0.02 0.46 9.07 97.61 0.89 1.34 15 27 H 0.29 6.59 8.30 -40.82 -0.34 6.26 15 LS Contribution 257.66 15.07 3.88 3.88 Total: -1.00 -26.10 257.66 -9.08 -35.17 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -0.98 Total: 1.16 kcal Atomic # 6 Polarization: -25.36 SS G_CDS: -2.73 Total: -28.09 kcal Atomic # 7 Polarization: -18.86 SS G_CDS: 0.61 Total: -18.25 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -5.03 Total: 13.25 kcal Atomic # 16 Polarization: -2.30 SS G_CDS: -4.83 Total: -7.13 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -26.10 -9.08 -35.17 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306910411.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.241 kcal (2) G-P(sol) polarization free energy of solvation -26.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds