Wall clock time and date at job start Mon Mar 30 2020 06:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.40382 * 119.81602 * 2 1 4 4 C 1.45791 * 128.51679 * 359.95160 * 3 2 1 5 5 C 1.31550 * 114.94702 * 180.30755 * 4 3 2 6 6 S 1.75217 * 111.56457 * 359.97438 * 5 4 3 7 7 C 1.40284 * 119.81116 * 180.27966 * 3 2 1 8 8 C 1.40039 * 120.74109 * 359.72671 * 7 3 2 9 9 C 1.37765 * 120.77220 * 359.97438 * 8 7 3 10 10 S 1.76205 * 120.42602 * 180.02562 * 9 8 7 11 11 C 1.39850 * 119.81690 * 179.72633 * 2 1 3 12 12 C 1.40979 * 120.41876 * 359.97438 * 11 2 1 13 13 H 1.07999 * 120.00141 * 43.98818 * 12 11 2 14 14 C 1.39839 * 120.00270 * 223.70679 * 12 11 2 15 15 N 1.30952 * 119.99923 * 20.91531 * 14 12 11 16 16 Si 1.86797 * 120.00204 * 200.91530 * 14 12 11 17 17 H 1.48493 * 109.47431 * 60.00152 * 16 14 12 18 18 H 1.48500 * 109.47300 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47374 * 300.00011 * 16 14 12 20 20 H 1.09005 * 109.46674 * 270.27510 * 1 2 3 21 21 H 1.08995 * 109.47108 * 30.27325 * 1 2 3 22 22 H 1.09000 * 109.46767 * 150.27856 * 1 2 3 23 23 H 1.07996 * 122.52509 * 0.28313 * 4 3 2 24 24 H 1.08000 * 124.21865 * 180.02562 * 5 4 3 25 25 H 1.08001 * 119.61284 * 179.97438 * 8 7 3 26 26 H 1.34493 * 102.99908 * 269.97946 * 10 9 8 27 27 H 0.96997 * 119.99751 * 179.81880 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2050 1.2180 0.0000 4 6 1.6667 2.5729 -0.0010 5 6 2.5703 3.5289 -0.0071 6 16 4.1969 2.8776 -0.0117 7 6 3.6078 1.2179 -0.0059 8 6 4.3235 0.0142 -0.0062 9 6 3.6664 -1.1966 0.0000 10 16 4.5761 -2.7056 0.0004 11 6 2.2024 -1.2134 0.0058 12 6 1.5025 -2.4371 0.0122 13 1 0.6500 -2.5751 -0.6364 14 6 1.9156 -3.4745 0.8540 15 7 2.6543 -3.2118 1.9029 16 14 1.4138 -5.2350 0.4823 17 1 1.9344 -5.6270 -0.8520 18 1 1.9751 -6.1390 1.5182 19 1 -0.0676 -5.3388 0.4857 20 1 -0.3633 0.0049 1.0277 21 1 -0.3633 0.8875 -0.5180 22 1 -0.3633 -0.8925 -0.5095 23 1 0.6061 2.7763 0.0027 24 1 2.3385 4.5837 -0.0083 25 1 5.4033 0.0354 -0.0112 26 1 4.7264 -2.9686 -1.3100 27 1 2.9387 -3.9311 2.4882 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306910411.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:49 Heat of formation + Delta-G solvation = 21.784166 kcal Electronic energy + Delta-G solvation = -13671.256942 eV Core-core repulsion = 11417.612456 eV Total energy + Delta-G solvation = -2253.644486 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.83900 -36.44138 -34.63715 -33.35272 -30.39573 -27.93864 -26.63492 -24.17891 -22.11320 -21.44543 -18.98415 -18.32213 -17.75255 -17.04053 -16.46504 -15.75352 -15.37908 -14.69890 -14.60841 -14.09083 -13.64671 -13.50481 -13.29584 -13.05003 -13.02556 -12.84218 -12.30784 -12.25775 -11.84109 -11.49890 -11.31516 -11.17517 -10.73386 -9.96548 -9.02478 -8.65986 -8.46701 -8.21308 -6.28604 -0.05841 0.80158 0.88461 1.11971 1.33750 1.43738 1.48656 1.54748 1.64763 2.26010 2.32033 2.83956 3.39747 4.03437 4.10370 4.53228 4.67217 4.77469 4.87846 5.00543 5.10809 5.12707 5.27001 5.38198 5.46929 5.48671 5.76333 5.96022 6.15011 6.45982 6.84845 6.96495 8.45433 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.032947 B = 0.008340 C = 0.006951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.647928 B = 3356.413936 C = 4027.089362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.187 4.187 3 C -0.038 4.038 4 C -0.137 4.137 5 C -0.174 4.174 6 S 0.030 5.970 7 C -0.255 4.255 8 C -0.028 4.028 9 C -0.166 4.166 10 S -0.100 6.100 11 C 0.134 3.866 12 C -0.499 4.499 13 H 0.086 0.914 14 C 0.080 3.920 15 N -0.794 5.794 16 Si 0.956 3.044 17 H -0.267 1.267 18 H -0.268 1.268 19 H -0.260 1.260 20 H 0.050 0.950 21 H 0.065 0.935 22 H 0.056 0.944 23 H 0.160 0.840 24 H 0.198 0.802 25 H 0.116 0.884 26 H 0.023 0.977 27 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.182 5.805 -2.209 6.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.193 4.193 3 C -0.044 4.044 4 C -0.167 4.167 5 C -0.307 4.307 6 S 0.289 5.711 7 C -0.370 4.370 8 C -0.053 4.053 9 C -0.281 4.281 10 S 0.058 5.942 11 C 0.127 3.873 12 C -0.527 4.527 13 H 0.104 0.896 14 C -0.140 4.140 15 N -0.418 5.418 16 Si 0.778 3.222 17 H -0.192 1.192 18 H -0.193 1.193 19 H -0.184 1.184 20 H 0.069 0.931 21 H 0.084 0.916 22 H 0.075 0.925 23 H 0.177 0.823 24 H 0.215 0.785 25 H 0.134 0.866 26 H -0.012 1.012 27 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.828 5.617 -1.773 5.948 hybrid contribution -1.651 -0.827 -0.941 2.073 sum -0.823 4.790 -2.714 5.567 Atomic orbital electron populations 1.20318 0.90521 1.01325 1.00709 1.20124 0.96263 0.90421 1.12476 1.19445 0.91658 0.93957 0.99380 1.21193 1.01481 0.89726 1.04347 1.25181 0.94655 1.04070 1.06798 1.83359 1.08794 0.96249 1.82676 1.22197 0.96543 0.96655 1.21644 1.20565 0.98016 0.89876 0.96860 1.22425 0.95967 0.92970 1.16694 1.85276 1.69441 1.32431 1.07086 1.18702 0.89642 0.93154 0.85753 1.19374 1.14128 0.97333 1.21907 0.89628 1.26103 0.92090 1.03248 0.92518 1.69712 1.25892 1.36675 1.09497 0.85643 0.79413 0.77889 0.79256 1.19167 1.19253 1.18403 0.93134 0.91619 0.92522 0.82310 0.78544 0.86593 1.01176 0.89951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.80 9.41 71.24 0.67 -2.13 15 2 C -0.19 -8.76 5.99 -18.95 -0.11 -8.87 15 3 C -0.04 -1.64 5.96 -20.31 -0.12 -1.76 15 4 C -0.14 -4.61 9.75 23.66 0.23 -4.38 15 5 C -0.17 -5.11 10.99 67.26 0.74 -4.37 15 6 S 0.03 1.04 23.23 -56.49 -1.31 -0.27 15 7 C -0.25 -11.17 6.47 23.20 0.15 -11.02 15 8 C -0.03 -1.32 9.78 22.59 0.22 -1.10 15 9 C -0.17 -8.36 5.91 24.29 0.14 -8.21 15 10 S -0.10 -4.68 21.71 -56.49 -1.23 -5.91 15 11 C 0.13 6.89 5.38 -20.09 -0.11 6.79 15 12 C -0.50 -25.23 7.72 23.33 0.18 -25.05 15 13 H 0.09 4.17 6.87 -2.91 -0.02 4.15 15 14 C 0.08 3.88 3.74 85.21 0.32 4.20 15 15 N -0.79 -40.24 11.04 21.81 0.24 -40.00 15 16 Si 0.96 37.62 29.61 68.60 2.03 39.65 15 17 H -0.27 -10.54 7.11 99.48 0.71 -9.84 15 18 H -0.27 -10.11 7.11 99.48 0.71 -9.41 15 19 H -0.26 -9.75 7.11 99.48 0.71 -9.04 15 20 H 0.05 1.94 8.14 -2.38 -0.02 1.92 15 21 H 0.06 2.14 7.18 -2.39 -0.02 2.12 15 22 H 0.06 2.22 6.50 -2.39 -0.02 2.21 15 23 H 0.16 4.40 7.46 -2.91 -0.02 4.38 15 24 H 0.20 3.97 8.06 -2.91 -0.02 3.95 15 25 H 0.12 4.96 8.06 -2.91 -0.02 4.94 15 26 H 0.02 1.04 9.07 73.35 0.67 1.71 15 27 H 0.29 13.59 8.30 -92.71 -0.77 12.82 15 Total: -1.00 -56.45 257.66 3.92 -52.53 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: 1.88 Total: 9.92 kcal Atomic # 6 Polarization: -58.22 SS G_CDS: 2.31 Total: -55.91 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: 0.24 Total: -40.00 kcal Atomic # 14 Polarization: 37.62 SS G_CDS: 2.03 Total: 39.65 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -2.54 Total: -6.19 kcal Total: -56.45 3.92 -52.53 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306910411.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.311 kcal (2) G-P(sol) polarization free energy of solvation -56.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds