Wall clock time and date at job start Mon Mar 30 2020 06:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.41323 * 119.58651 * 2 1 4 4 C 1.45488 * 129.08810 * 359.97438 * 3 2 1 5 5 C 1.31868 * 114.88364 * 180.02562 * 4 3 2 6 6 S 1.75293 * 111.33604 * 0.02562 * 5 4 3 7 7 C 1.39407 * 119.06948 * 180.02562 * 3 2 1 8 8 C 1.42273 * 119.79722 * 0.02562 * 7 3 2 9 9 C 1.40928 * 120.05042 * 179.97438 * 8 7 3 10 10 H 1.08001 * 119.99817 * 334.38369 * 9 8 7 11 11 C 1.39879 * 120.00025 * 154.39007 * 9 8 7 12 12 N 1.30898 * 119.99773 * 342.55184 * 11 9 8 13 13 Si 1.86798 * 120.00389 * 162.55782 * 11 9 8 14 14 H 1.48506 * 109.46647 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47345 * 119.99702 * 13 11 9 16 16 H 1.48498 * 109.47260 * 239.99961 * 13 11 9 17 17 C 1.40228 * 119.89983 * 0.02562 * 8 7 3 18 18 C 1.38530 * 119.58256 * 180.02562 * 2 1 3 19 19 S 1.76203 * 119.71052 * 359.97438 * 18 2 1 20 20 H 1.08996 * 109.46822 * 90.00299 * 1 2 3 21 21 H 1.09004 * 109.46804 * 209.99597 * 1 2 3 22 22 H 1.08994 * 109.47327 * 329.99974 * 1 2 3 23 23 H 1.08008 * 122.56087 * 359.97438 * 4 3 2 24 24 H 1.08002 * 124.33247 * 179.97438 * 5 4 3 25 25 H 0.97003 * 119.99670 * 180.02562 * 12 11 9 26 26 H 1.08001 * 120.09351 * 179.97438 * 17 8 7 27 27 H 1.34502 * 102.99896 * 270.01042 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2048 1.2290 0.0000 4 6 1.6757 2.5842 -0.0005 5 6 2.5883 3.5361 -0.0009 6 16 4.2083 2.8666 -0.0014 7 6 3.5988 1.2164 -0.0005 8 6 4.2946 -0.0246 -0.0016 9 6 5.7038 -0.0435 -0.0027 10 1 6.2547 0.7927 -0.4072 11 6 6.3889 -1.1454 0.5198 12 7 5.7687 -1.9893 1.3052 13 14 8.1887 -1.4127 0.0972 14 1 8.6525 -0.3258 -0.8022 15 1 8.9965 -1.4033 1.3432 16 1 8.3477 -2.7216 -0.5859 17 6 3.5762 -1.2288 -0.0027 18 6 2.1909 -1.2047 -0.0005 19 16 1.2912 -2.7197 -0.0005 20 1 -0.3633 -0.0001 -1.0276 21 1 -0.3633 -0.8901 0.5138 22 1 -0.3633 0.8899 0.5138 23 1 0.6163 2.7947 -0.0014 24 1 2.3660 4.5930 -0.0017 25 1 6.2439 -2.7532 1.6679 26 1 4.1012 -2.1726 -0.0040 27 1 1.1370 -2.9800 1.3100 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306929320.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:53 Heat of formation + Delta-G solvation = 13.951897 kcal Electronic energy + Delta-G solvation = -13556.721617 eV Core-core repulsion = 11302.737499 eV Total energy + Delta-G solvation = -2253.984119 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.98746 -36.61385 -35.10897 -33.07500 -30.21604 -29.01961 -25.73025 -24.31614 -22.44783 -21.57663 -19.30627 -18.30883 -17.75192 -16.81725 -16.50618 -15.91144 -15.52060 -14.79539 -14.62068 -14.38057 -13.70245 -13.42457 -13.24184 -13.04949 -12.91494 -12.65851 -12.55712 -12.16125 -11.94505 -11.70337 -11.49101 -11.09939 -10.98387 -9.95939 -9.14921 -8.91185 -8.78026 -8.49605 -6.37439 0.19607 0.34224 0.89536 1.07917 1.31906 1.36989 1.48651 1.51290 1.73777 1.97190 2.15732 2.62394 3.43415 4.03492 4.41264 4.52791 4.57476 4.81206 4.92783 4.99348 5.08327 5.14011 5.30068 5.35550 5.42856 5.65866 5.79671 5.93097 6.11434 6.39584 6.73911 6.76100 8.20793 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.017420 B = 0.010982 C = 0.006887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.925694 B = 2549.023135 C = 4064.617128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.140 4.140 3 C -0.069 4.069 4 C -0.125 4.125 5 C -0.193 4.193 6 S 0.037 5.963 7 C -0.221 4.221 8 C 0.106 3.894 9 C -0.482 4.482 10 H 0.078 0.922 11 C 0.039 3.961 12 N -0.816 5.816 13 Si 0.981 3.019 14 H -0.257 1.257 15 H -0.264 1.264 16 H -0.261 1.261 17 C -0.149 4.149 18 C -0.087 4.087 19 S -0.131 6.131 20 H 0.070 0.930 21 H 0.066 0.934 22 H 0.067 0.933 23 H 0.166 0.834 24 H 0.197 0.803 25 H 0.292 0.708 26 H 0.117 0.883 27 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.788 4.330 -1.366 6.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.146 4.146 3 C -0.078 4.078 4 C -0.156 4.156 5 C -0.327 4.327 6 S 0.299 5.701 7 C -0.337 4.337 8 C 0.099 3.901 9 C -0.511 4.511 10 H 0.096 0.904 11 C -0.178 4.178 12 N -0.441 5.441 13 Si 0.801 3.199 14 H -0.181 1.181 15 H -0.188 1.188 16 H -0.185 1.185 17 C -0.175 4.175 18 C -0.200 4.200 19 S 0.027 5.973 20 H 0.089 0.911 21 H 0.085 0.915 22 H 0.086 0.914 23 H 0.183 0.817 24 H 0.214 0.786 25 H 0.103 0.897 26 H 0.135 0.865 27 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -3.819 4.035 -1.437 5.738 hybrid contribution 0.133 -0.317 1.092 1.145 sum -3.686 3.717 -0.345 5.246 Atomic orbital electron populations 1.20624 0.89265 1.02317 1.02307 1.19785 0.96438 0.89475 1.08929 1.19292 0.91368 0.93972 1.03188 1.21123 1.01385 0.89283 1.03823 1.25352 0.94914 1.04160 1.08249 1.83559 1.08958 0.97107 1.80440 1.23140 0.96593 0.97214 1.16708 1.17263 0.93708 0.88921 0.90206 1.19682 0.91411 1.04030 1.36000 0.90430 1.26734 1.05555 0.93791 0.91671 1.69871 1.40805 1.11815 1.21623 0.85162 0.75749 0.79585 0.79377 1.18081 1.18849 1.18516 1.21409 0.91630 0.97987 1.06485 1.20769 0.95381 0.94210 1.09629 1.85021 1.72961 1.28078 1.11262 0.91138 0.91488 0.91395 0.81711 0.78615 0.89711 0.86513 0.96804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.88 9.37 71.24 0.67 -2.21 15 2 C -0.14 -6.00 5.98 -19.03 -0.11 -6.12 15 3 C -0.07 -3.02 5.96 -20.37 -0.12 -3.14 15 4 C -0.13 -4.29 9.79 23.32 0.23 -4.07 15 5 C -0.19 -6.19 11.02 67.00 0.74 -5.45 15 6 S 0.04 1.50 22.82 -56.49 -1.29 0.21 15 7 C -0.22 -10.82 6.37 23.55 0.15 -10.67 15 8 C 0.11 5.73 5.58 -21.13 -0.12 5.61 15 9 C -0.48 -25.66 8.81 23.33 0.21 -25.46 15 10 H 0.08 4.05 7.75 -2.91 -0.02 4.02 15 11 C 0.04 1.92 5.12 85.23 0.44 2.36 15 12 N -0.82 -41.94 10.99 21.82 0.24 -41.70 15 13 Si 0.98 37.66 29.59 68.60 2.03 39.69 15 14 H -0.26 -9.74 7.11 99.48 0.71 -9.03 15 15 H -0.26 -9.68 7.11 99.48 0.71 -8.97 15 16 H -0.26 -9.59 7.11 99.48 0.71 -8.89 15 17 C -0.15 -7.87 8.38 22.83 0.19 -7.68 15 18 C -0.09 -4.05 6.08 22.41 0.14 -3.92 15 19 S -0.13 -5.09 23.85 -56.49 -1.35 -6.43 15 20 H 0.07 2.11 8.14 -2.39 -0.02 2.10 15 21 H 0.07 2.11 6.70 -2.39 -0.02 2.10 15 22 H 0.07 1.92 7.22 -2.39 -0.02 1.90 15 23 H 0.17 4.38 7.51 -2.91 -0.02 4.36 15 24 H 0.20 4.43 8.06 -2.91 -0.02 4.41 15 25 H 0.29 13.50 8.30 -92.71 -0.77 12.73 15 26 H 0.12 6.44 6.19 -2.91 -0.02 6.43 15 27 H 0.07 2.53 9.07 73.35 0.67 3.20 15 Total: -1.00 -58.52 259.98 3.91 -54.60 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 1.88 Total: 14.35 kcal Atomic # 6 Polarization: -63.13 SS G_CDS: 2.40 Total: -60.73 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: 0.24 Total: -41.70 kcal Atomic # 14 Polarization: 37.66 SS G_CDS: 2.03 Total: 39.69 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -2.64 Total: -6.22 kcal Total: -58.52 3.91 -54.60 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306929320.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.556 kcal (2) G-P(sol) polarization free energy of solvation -58.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds