Wall clock time and date at job start Mon Mar 30 2020 06:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37465 * 119.99945 * 2 1 4 4 C 1.38943 * 120.62589 * 179.74836 * 3 2 1 5 5 S 1.76195 * 119.66332 * 180.26223 * 4 3 2 6 6 C 1.42360 * 120.68034 * 0.53138 * 4 3 2 7 7 C 1.45288 * 129.11265 * 179.75421 * 6 4 3 8 8 C 1.31993 * 114.87424 * 179.97438 * 7 6 4 9 9 S 1.75319 * 111.23162 * 359.97438 * 8 7 6 10 10 C 1.39017 * 118.92617 * 359.73302 * 6 4 3 11 11 C 1.40552 * 120.00178 * 180.27941 * 2 1 3 12 12 C 1.40735 * 119.99631 * 359.97438 * 11 2 1 13 13 H 1.07998 * 119.99730 * 321.10967 * 12 11 2 14 14 C 1.39705 * 120.00127 * 141.10418 * 12 11 2 15 15 N 1.31035 * 120.00204 * 338.30620 * 14 12 11 16 16 Si 1.86798 * 120.00005 * 158.30214 * 14 12 11 17 17 H 1.48507 * 109.46979 * 60.00310 * 16 14 12 18 18 H 1.48499 * 109.47355 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47226 * 300.00413 * 16 14 12 20 20 H 1.09003 * 109.46900 * 269.72129 * 1 2 3 21 21 H 1.09000 * 109.46904 * 149.72142 * 1 2 3 22 22 H 1.08993 * 109.47027 * 29.71694 * 1 2 3 23 23 H 1.07997 * 119.68881 * 0.02562 * 3 2 1 24 24 H 1.40999 * 99.99929 * 270.26917 * 5 4 3 25 25 H 1.08001 * 122.56058 * 0.02562 * 7 6 4 26 26 H 1.08003 * 124.38814 * 179.97438 * 8 7 6 27 27 H 0.96998 * 119.99784 * 185.42126 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1944 1.1905 0.0000 4 6 3.5837 1.2057 0.0053 5 16 4.4389 2.7462 0.0121 6 6 4.3235 -0.0106 -0.0006 7 6 5.7629 -0.2079 -0.0015 8 6 6.1503 -1.4697 -0.0071 9 16 4.7745 -2.5563 -0.0111 10 6 3.6333 -1.2173 -0.0060 11 6 2.2099 -1.2172 -0.0059 12 6 1.5061 -2.4359 -0.0113 13 1 0.6059 -2.5423 0.5757 14 6 1.9720 -3.5082 -0.7762 15 7 2.7741 -3.2907 -1.7893 16 14 1.4516 -5.2520 -0.3546 17 1 -0.0266 -5.3628 -0.4444 18 1 2.0784 -6.2004 -1.3100 19 1 1.8895 -5.5791 1.0261 20 1 -0.3633 -0.0050 1.0277 21 1 -0.3633 -0.8875 -0.5182 22 1 -0.3633 0.8925 -0.5094 23 1 1.6493 2.1228 0.0004 24 1 4.5572 2.9667 -1.3755 25 1 6.4624 0.6150 0.0029 26 1 7.1814 -1.7911 -0.0089 27 1 3.0347 -4.0245 -2.3677 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306931051.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:26 Heat of formation + Delta-G solvation = 14.326519 kcal Electronic energy + Delta-G solvation = -13752.003940 eV Core-core repulsion = 11498.036067 eV Total energy + Delta-G solvation = -2253.967874 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -39.86561 -36.66765 -35.29043 -32.09017 -31.25566 -27.82602 -26.75838 -23.78694 -22.77700 -20.85772 -19.42142 -18.51077 -17.19534 -16.87812 -16.41046 -15.76199 -15.23674 -14.70028 -14.62420 -14.41583 -13.66466 -13.58138 -13.15605 -12.98923 -12.83354 -12.74957 -12.45576 -12.11465 -12.00350 -11.65512 -11.29219 -11.16535 -10.70843 -9.95769 -8.99734 -8.88959 -8.85829 -8.07477 -6.49747 0.05134 0.71876 1.12404 1.16664 1.36240 1.41421 1.47781 1.66709 1.77257 1.96003 2.15368 2.64468 3.37649 4.02638 4.42203 4.60084 4.64220 4.75268 4.97964 5.06851 5.09135 5.21369 5.23063 5.39803 5.51455 5.67199 5.75730 5.98559 6.17509 6.38788 6.71642 6.79062 8.17070 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.025332 B = 0.010184 C = 0.007579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.077680 B = 2748.778951 C = 3693.530138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.214 4.214 3 C -0.035 4.035 4 C -0.216 4.216 5 S -0.149 6.149 6 C -0.037 4.037 7 C -0.143 4.143 8 C -0.214 4.214 9 S 0.086 5.914 10 C -0.203 4.203 11 C 0.140 3.860 12 C -0.479 4.479 13 H 0.094 0.906 14 C 0.042 3.958 15 N -0.786 5.786 16 Si 0.961 3.039 17 H -0.254 1.254 18 H -0.266 1.266 19 H -0.260 1.260 20 H 0.058 0.942 21 H 0.054 0.946 22 H 0.062 0.938 23 H 0.128 0.872 24 H 0.071 0.929 25 H 0.151 0.849 26 H 0.186 0.814 27 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.480 0.639 1.400 2.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.220 4.220 3 C -0.057 4.057 4 C -0.332 4.332 5 S 0.008 5.992 6 C -0.048 4.048 7 C -0.175 4.175 8 C -0.349 4.349 9 S 0.351 5.649 10 C -0.320 4.320 11 C 0.134 3.866 12 C -0.507 4.507 13 H 0.111 0.889 14 C -0.178 4.178 15 N -0.410 5.410 16 Si 0.782 3.218 17 H -0.178 1.178 18 H -0.190 1.190 19 H -0.184 1.184 20 H 0.077 0.923 21 H 0.073 0.927 22 H 0.081 0.919 23 H 0.146 0.854 24 H 0.036 0.964 25 H 0.168 0.832 26 H 0.203 0.797 27 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.058 -0.260 1.457 2.535 hybrid contribution -0.412 0.032 -1.073 1.150 sum 1.646 -0.228 0.384 1.705 Atomic orbital electron populations 1.20344 0.90289 1.01497 1.00967 1.20043 0.96578 0.91722 1.13686 1.20959 0.92177 0.97426 0.95113 1.20496 0.94696 0.92135 1.25853 1.85967 1.77128 1.24616 1.11494 1.19494 0.92873 0.92595 0.99799 1.21072 0.93366 0.97576 1.05436 1.25669 1.04092 0.97402 1.07701 1.83582 0.94225 1.09653 1.77421 1.22833 0.97914 0.94799 1.16473 1.17298 0.88677 0.93757 0.86871 1.19630 1.10248 0.95482 1.25295 0.88857 1.26583 0.93092 1.04600 0.93543 1.69869 1.24337 1.36785 1.09974 0.85508 0.80140 0.76414 0.79782 1.17791 1.18995 1.18397 0.92341 0.92730 0.91893 0.85393 0.96436 0.83155 0.79675 0.89293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.83 9.44 71.24 0.67 -2.15 15 2 C -0.21 -9.89 5.93 -19.48 -0.12 -10.01 15 3 C -0.03 -1.53 9.35 22.26 0.21 -1.32 15 4 C -0.22 -9.69 6.21 23.46 0.15 -9.54 15 5 S -0.15 -5.50 25.30 -56.49 -1.43 -6.93 15 6 C -0.04 -1.73 6.00 -20.25 -0.12 -1.85 15 7 C -0.14 -5.82 9.94 23.18 0.23 -5.59 15 8 C -0.21 -8.18 11.04 66.92 0.74 -7.44 15 9 S 0.09 3.85 19.89 -56.49 -1.12 2.73 15 10 C -0.20 -10.22 5.73 23.48 0.13 -10.08 15 11 C 0.14 7.13 5.37 -21.08 -0.11 7.02 15 12 C -0.48 -23.61 7.58 23.24 0.18 -23.44 15 13 H 0.09 4.40 7.46 -2.91 -0.02 4.38 15 14 C 0.04 1.93 4.21 85.17 0.36 2.29 15 15 N -0.79 -38.26 10.76 21.79 0.23 -38.03 15 16 Si 0.96 35.68 29.61 68.60 2.03 37.71 15 17 H -0.25 -9.01 7.11 99.48 0.71 -8.30 15 18 H -0.27 -9.41 7.11 99.48 0.71 -8.70 15 19 H -0.26 -9.64 7.11 99.48 0.71 -8.93 15 20 H 0.06 2.04 8.14 -2.39 -0.02 2.02 15 21 H 0.05 2.17 6.97 -2.39 -0.02 2.15 15 22 H 0.06 2.08 8.08 -2.39 -0.02 2.06 15 23 H 0.13 4.84 8.06 -2.91 -0.02 4.82 15 24 H 0.07 2.50 9.55 73.80 0.70 3.21 15 25 H 0.15 5.37 7.92 -2.91 -0.02 5.35 15 26 H 0.19 5.45 8.06 -2.91 -0.02 5.42 15 27 H 0.30 13.19 8.31 -92.71 -0.77 12.42 15 Total: -1.00 -54.68 260.23 3.94 -50.75 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: 1.91 Total: 15.89 kcal Atomic # 6 Polarization: -64.44 SS G_CDS: 2.32 Total: -62.12 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.23 Total: -38.03 kcal Atomic # 14 Polarization: 35.68 SS G_CDS: 2.03 Total: 37.71 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.55 Total: -4.20 kcal Total: -54.68 3.94 -50.75 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306931051.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.072 kcal (2) G-P(sol) polarization free energy of solvation -54.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds