Wall clock time and date at job start Mon Mar 30 2020 06:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.32004 * 122.56185 * 2 1 4 4 S 1.75315 * 111.23678 * 180.02562 * 3 2 1 5 5 C 1.75923 * 92.14251 * 359.97438 * 4 3 2 6 6 C 1.39046 * 109.79427 * 359.72477 * 5 4 3 7 7 C 1.42321 * 118.92785 * 179.66972 * 6 5 4 8 8 S 1.76200 * 119.65861 * 180.29032 * 7 6 5 9 9 C 1.38979 * 120.68080 * 0.55767 * 7 6 5 10 10 C 1.37427 * 120.62841 * 359.73158 * 9 7 6 11 11 C 1.40586 * 119.99644 * 0.02562 * 10 9 7 12 12 C 1.40730 * 119.99621 * 180.02562 * 11 10 9 13 13 H 1.08001 * 120.00448 * 205.20256 * 12 11 10 14 14 C 1.39707 * 120.00107 * 25.19808 * 12 11 10 15 15 N 1.31035 * 119.99754 * 18.05206 * 14 12 11 16 16 Si 1.86798 * 120.00482 * 198.05219 * 14 12 11 17 17 H 1.48498 * 109.46911 * 59.99852 * 16 14 12 18 18 H 1.48492 * 109.47506 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47127 * 300.00139 * 16 14 12 20 20 H 1.08999 * 109.46990 * 90.03089 * 1 2 3 21 21 H 1.08994 * 109.47423 * 330.02362 * 1 2 3 22 22 H 1.09007 * 109.46888 * 210.02659 * 1 2 3 23 23 H 1.08004 * 124.37916 * 359.97401 * 3 2 1 24 24 H 1.40998 * 100.00180 * 270.26715 * 8 7 6 25 25 H 1.08004 * 119.68963 * 179.70997 * 9 7 6 26 26 H 1.08000 * 120.00126 * 179.97438 * 10 9 7 27 27 H 0.97005 * 120.00511 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2174 1.1125 0.0000 4 16 3.9364 0.7683 -0.0007 5 6 3.6557 -0.9684 -0.0003 6 6 2.2890 -1.2245 0.0067 7 6 1.8417 -2.5755 0.0011 8 16 0.1141 -2.9220 0.0020 9 6 2.7535 -3.6244 0.0005 10 6 4.1054 -3.3770 -0.0003 11 6 4.5775 -2.0528 0.0001 12 6 5.9618 -1.7994 -0.0012 13 1 6.3411 -0.8700 0.3973 14 6 6.8455 -2.7501 -0.5179 15 7 6.4011 -3.6967 -1.3075 16 14 8.6605 -2.6720 -0.0832 17 1 8.8228 -2.7935 1.3879 18 1 9.3787 -3.7849 -0.7545 19 1 9.2230 -1.3750 -0.5378 20 1 -0.3633 -0.0006 -1.0277 21 1 -0.3634 0.8901 0.5134 22 1 -0.3633 -0.8898 0.5143 23 1 1.7944 2.1063 -0.0004 24 1 -0.1252 -2.9703 1.3907 25 1 2.3964 -4.6437 0.0009 26 1 4.8049 -4.1998 -0.0003 27 1 7.0147 -4.3567 -1.6666 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306946498.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:32 Heat of formation + Delta-G solvation = 28.546448 kcal Electronic energy + Delta-G solvation = -13531.221174 eV Core-core repulsion = 11277.869923 eV Total energy + Delta-G solvation = -2253.351251 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.20215 -35.42346 -33.44553 -30.26151 -28.88795 -27.22390 -25.42071 -21.94860 -21.21439 -19.05759 -17.59050 -17.02557 -15.78186 -15.16765 -14.48887 -14.36510 -13.90002 -13.34812 -12.94050 -12.63937 -12.18350 -11.94231 -11.65230 -11.57590 -11.37028 -11.03856 -10.93986 -10.59751 -10.32090 -10.10482 -9.81441 -9.42889 -9.29604 -8.22502 -7.44855 -7.16560 -7.01350 -6.75971 -4.69061 1.70478 2.35536 2.63864 2.73200 2.89265 2.91461 2.96036 3.13468 3.35878 3.58367 3.68213 4.32535 5.26267 5.45433 5.82246 6.06709 6.17760 6.29089 6.40488 6.58796 6.70338 6.79755 6.87988 7.03892 7.21306 7.32717 7.56067 7.70114 7.85510 8.23283 8.42209 8.51303 9.76758 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.027147 B = 0.008457 C = 0.006587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.184602 B = 3310.208250 C = 4249.874716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.089 4.089 3 C -0.218 4.218 4 S 0.042 5.958 5 C -0.211 4.211 6 C 0.003 3.997 7 C -0.216 4.216 8 S -0.169 6.169 9 C -0.033 4.033 10 C -0.186 4.186 11 C 0.162 3.838 12 C -0.432 4.432 13 H 0.087 0.913 14 C 0.075 3.925 15 N -0.763 5.763 16 Si 0.916 3.084 17 H -0.259 1.259 18 H -0.273 1.273 19 H -0.260 1.260 20 H 0.065 0.935 21 H 0.045 0.955 22 H 0.089 0.911 23 H 0.150 0.850 24 H 0.056 0.944 25 H 0.104 0.896 26 H 0.128 0.872 27 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.939 2.693 1.901 4.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.103 4.103 3 C -0.352 4.352 4 S 0.306 5.694 5 C -0.328 4.328 6 C -0.007 4.007 7 C -0.332 4.332 8 S -0.010 6.010 9 C -0.055 4.055 10 C -0.210 4.210 11 C 0.156 3.844 12 C -0.460 4.460 13 H 0.105 0.895 14 C -0.148 4.148 15 N -0.385 5.385 16 Si 0.739 3.261 17 H -0.183 1.183 18 H -0.198 1.198 19 H -0.185 1.185 20 H 0.083 0.917 21 H 0.064 0.936 22 H 0.107 0.893 23 H 0.168 0.832 24 H 0.022 0.978 25 H 0.122 0.878 26 H 0.145 0.855 27 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.484 3.251 1.502 4.359 hybrid contribution 0.519 -0.642 0.939 1.251 sum -1.966 2.609 2.442 4.078 Atomic orbital electron populations 1.21034 0.90375 1.02626 1.02380 1.19788 0.96584 0.91217 1.02677 1.24735 0.97484 1.01088 1.11919 1.83480 1.03873 1.01418 1.80585 1.22508 0.95623 0.95256 1.19411 1.18794 0.91115 0.91922 0.98882 1.20014 0.91435 0.92798 1.28953 1.86186 1.10359 1.93847 1.10648 1.20846 0.93248 0.96212 0.95157 1.21022 0.93479 0.96331 1.10178 1.17123 0.91719 0.89521 0.86044 1.19635 0.91043 1.02904 1.32377 0.89540 1.26046 1.02576 0.93751 0.92404 1.69905 1.38637 1.11030 1.18945 0.86198 0.80139 0.79391 0.80334 1.18301 1.19808 1.18452 0.91654 0.93600 0.89258 0.83231 0.97821 0.87778 0.85472 0.89877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.75 9.23 36.00 0.33 -1.41 15 2 C -0.09 -1.80 5.97 -103.74 -0.62 -2.42 15 3 C -0.22 -4.15 10.78 28.82 0.31 -3.84 15 4 S 0.04 0.89 22.81 -107.50 -2.45 -1.56 15 5 C -0.21 -5.17 6.35 -37.71 -0.24 -5.41 15 6 C 0.00 0.08 6.00 -105.23 -0.63 -0.55 15 7 C -0.22 -4.93 6.21 -37.74 -0.23 -5.16 15 8 S -0.17 -3.23 21.83 -107.50 -2.35 -5.58 15 9 C -0.03 -0.76 9.70 -39.60 -0.38 -1.14 15 10 C -0.19 -4.58 8.64 -38.99 -0.34 -4.92 15 11 C 0.16 4.14 5.59 -106.50 -0.60 3.54 15 12 C -0.43 -10.69 8.79 -38.09 -0.33 -11.03 15 13 H 0.09 2.07 7.74 -52.49 -0.41 1.67 15 14 C 0.07 1.72 5.11 -17.34 -0.09 1.63 15 15 N -0.76 -18.07 10.99 55.54 0.61 -17.46 15 16 Si 0.92 17.13 29.60 -169.99 -5.03 12.10 15 17 H -0.26 -4.81 7.11 56.52 0.40 -4.41 15 18 H -0.27 -4.94 7.11 56.52 0.40 -4.54 15 19 H -0.26 -4.84 7.11 56.52 0.40 -4.44 15 20 H 0.06 1.05 8.14 -51.93 -0.42 0.63 15 21 H 0.05 0.66 8.12 -51.93 -0.42 0.24 15 22 H 0.09 1.53 4.89 -32.68 -0.16 1.37 15 23 H 0.15 2.33 8.06 -52.48 -0.42 1.91 15 24 H 0.06 1.02 9.55 96.90 0.93 1.95 15 25 H 0.10 2.16 8.06 -52.48 -0.42 1.73 15 26 H 0.13 3.15 6.17 -52.49 -0.32 2.82 15 27 H 0.29 6.17 8.30 -40.82 -0.34 5.83 15 LS Contribution 257.95 15.07 3.89 3.89 Total: -1.00 -25.64 257.95 -8.94 -34.58 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -0.79 Total: 4.76 kcal Atomic # 6 Polarization: -27.90 SS G_CDS: -2.82 Total: -30.72 kcal Atomic # 7 Polarization: -18.07 SS G_CDS: 0.61 Total: -17.46 kcal Atomic # 14 Polarization: 17.13 SS G_CDS: -5.03 Total: 12.10 kcal Atomic # 16 Polarization: -2.34 SS G_CDS: -4.80 Total: -7.14 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -25.64 -8.94 -34.58 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306946498.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.125 kcal (2) G-P(sol) polarization free energy of solvation -25.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds